Znev003429.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:340725-346090[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00011 0.004 16.9 3.3 1 23 222 244 222 244 0.98 2 14 0.00013 0.0048 16.7 2.9 1 19 250 268 250 272 0.94 3 14 9.2e-05 0.0033 17.2 4.6 1 23 278 300 278 300 0.92 4 14 9.4e-06 0.00034 20.3 2.5 1 23 306 328 306 328 0.99 5 14 1.6e-07 5.8e-06 25.9 4.6 1 23 334 356 334 356 0.99 6 14 3.1e-05 0.0011 18.7 1.8 1 23 362 384 362 384 0.98 7 14 5.5e-06 0.0002 21.0 5.2 1 23 390 412 390 412 0.97 8 14 2.3e-05 0.00081 19.1 0.8 1 23 418 441 418 441 0.95 9 14 0.00025 0.009 15.8 3.7 1 23 447 469 447 469 0.98 10 14 5.5e-07 2e-05 24.2 1.4 1 23 475 497 475 497 0.98 11 14 8.6e-07 3.1e-05 23.6 0.3 1 23 503 525 503 525 0.98 12 14 0.00013 0.0047 16.7 0.7 1 23 531 553 531 553 0.95 13 14 3.7e-06 0.00013 21.6 2.0 1 23 559 581 559 581 0.95 14 14 8.2e-05 0.0029 17.3 1.4 1 23 587 610 587 610 0.92
Sequence Information
- Coding Sequence
- ATGGATGGTGTTAAAAGCGAACTTGATTCGGACAGTGATAGGGAGTCAGCCTCTCCACAATATGAGCCtcaattcattaaaataaaagaagaacaCGTGGCAGATGACGATAATGAAGAAGAGACGTCCCATACAATGCAAAGTGATGATGAGCTTAGTGACACCCCAGATGAAGATATGGCTGAAGCAGTTATGTTTCCTATTGTTAAGACTGAGTACCATGTTGCTGATATGTCACAGAAAGATGCAGCAGATGAAGACATGTTCTACGCAGACAAGAATGAAATGAAGTTCCATGCTTTGGATGTCCCAGCTATAAAGCAAGAAATGAAAGATGATATATCTGCAGAGGAAAATGAATATATGCAAGAGAAACTTGAAGTCAGATTGGAAGACTTGAACAAACAAAATCTTTCTGGTGGCAGTAGTGGACAATCTTCGATAGCCGAGCAGGTCAGATATACCGGTCACTACATACAACAGAATGAAGAATGCCATGACCAAGTGTGCATTCAATGTGGCACAAAAATTAAAGGCCTGTCTACTGATACATTATCACACAACAGTTCAAAAGCCCTttgtaaaaattgtgtttcaggCAGAAGTTCATCTGCAAAGCATATTGATGGTTCACATGAGAAGTCTGATTCAGTAGAAAAATCATTTTCATGTGAGTTTTGTAAAAAGGAATTTccaaaacatgaatatttaatgaaacatttacgTGTACATAATGAAGGGAAACCATACAAGTGTGATGTGTGCAGTAAAAGCTTCTCAAGATATGGAGACCTGAAACAGCATTGCATTGAACACAATGGAGGGAAACCTTATGAGTGCAAATACTGCAATAAGAGATTTTCAGAAAAGGGGAACCTGAAGACTCATTGCCTCATGCACACTGGAGATATGCCTTACCAATGTCACGTTTGTCAAAAGCGATTTCCGCATAACGCGTACTTGATCGGACATTTGCGTATTCACACGGGTGAAAAGCCATATGAATGCCATATTTGTAATAAGCGTTTTACTCACAATAGTGGACTTAAAACGCATATTCGCGTACACACTGGAGAAAAAAAATACCATTGCACAGTGTGCGATAAAGTTTTCTCTACTACTTCGATTCTAAACACACATTTACGTATACACACTGGAGAGAAACCCTACCAATGTCAAGTTTGTAAAAAATGCTTTCGTTCAAGCAGCAATCTTAAAATGCATACGTATATTCATACAGGTGGCAAAAGTTATCAGTGCAAAGTATGCGAAAAGATATTTTCTACTACTTCTTCCCTAAATTTACATTCCCTGCGTGTTCATTCGGGCAAGAAAGAGTATCAATGTACAGTGTGTGAGAAAAGATTTTCTGATGTATGTAAATTGAAAACTCATTCACGTATTCATGCTGAAGAAAAGCCGTATGCTTGTAGTATGTGCGATAAAAGATTCTCCCATCGTCCTAATCTTAACCTTCATATTCGTATTCACACTGGAGAGAAACCATACTCATGTGACGTATGTGAGAAACGTTTCAGCTCTAGTAGTGCTCTGACAAGTCATGCTCGCATTCACACGGGAGAAAAGAAATACCAGTGTACCGTGTGCAACAAATTGTTTGCAAATAGTTCGACGCTTGTTACACATTCTTACATCCACTCTGGGGAGAAACCGTATGAATGTGATGTATGCAAGAAACGTTTTCGTTCTAACAGTAATTTAAGAACGCATTCGTATATTCATACAGGTGGAAGGCGATACACTTGTGCAATCTGTGGTTCACAATTCTCTAGCAAGTCTAACCTCAATACACACTCTCtccatgttcacaaaataatCAAACAGCCAGCTCCAAATAGAGGACCTCGGCCTGTAGTCAAGGTAACCACACATGCACTTGTAACTGACTCAACCACAGAATCTGTACTTCCAGATGTTCCAGTCACAGAATCTGTTCTTCCAGATATTCCTGTCACAGGATTACTGTCTCCTAatcattttgttacaaaaacagaacCTCCTGATGATTCACTCTCTGATTCCATGTCCGAGACTGAGGTTTCATCTTAG
- Protein Sequence
- MDGVKSELDSDSDRESASPQYEPQFIKIKEEHVADDDNEEETSHTMQSDDELSDTPDEDMAEAVMFPIVKTEYHVADMSQKDAADEDMFYADKNEMKFHALDVPAIKQEMKDDISAEENEYMQEKLEVRLEDLNKQNLSGGSSGQSSIAEQVRYTGHYIQQNEECHDQVCIQCGTKIKGLSTDTLSHNSSKALCKNCVSGRSSSAKHIDGSHEKSDSVEKSFSCEFCKKEFPKHEYLMKHLRVHNEGKPYKCDVCSKSFSRYGDLKQHCIEHNGGKPYECKYCNKRFSEKGNLKTHCLMHTGDMPYQCHVCQKRFPHNAYLIGHLRIHTGEKPYECHICNKRFTHNSGLKTHIRVHTGEKKYHCTVCDKVFSTTSILNTHLRIHTGEKPYQCQVCKKCFRSSSNLKMHTYIHTGGKSYQCKVCEKIFSTTSSLNLHSLRVHSGKKEYQCTVCEKRFSDVCKLKTHSRIHAEEKPYACSMCDKRFSHRPNLNLHIRIHTGEKPYSCDVCEKRFSSSSALTSHARIHTGEKKYQCTVCNKLFANSSTLVTHSYIHSGEKPYECDVCKKRFRSNSNLRTHSYIHTGGRRYTCAICGSQFSSKSNLNTHSLHVHKIIKQPAPNRGPRPVVKVTTHALVTDSTTESVLPDVPVTESVLPDIPVTGLLSPNHFVTKTEPPDDSLSDSMSETEVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396515;
- 90% Identity
- -
- 80% Identity
- -