Znev009954.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zootermopsis nevadensis
Gene Symbol
-
Assembly
GCA_000696155.1
Location
NW:387490-397219[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.7e-07 6.2e-06 25.8 1.9 1 23 204 226 204 226 0.99
2 15 2.6e-05 0.00094 18.9 1.4 1 23 232 254 232 254 0.98
3 15 3.7e-06 0.00013 21.6 1.7 1 23 260 282 260 282 0.95
4 15 0.0003 0.011 15.6 3.3 1 23 288 310 288 310 0.98
5 15 1.2e-06 4.4e-05 23.1 2.6 1 23 316 338 316 338 0.98
6 15 0.00094 0.034 14.0 5.6 1 23 344 366 344 366 0.99
7 15 0.00071 0.026 14.4 2.5 3 23 374 394 372 394 0.97
8 15 0.053 1.9 8.5 1.5 1 23 400 422 400 422 0.98
9 15 9.5e-07 3.4e-05 23.4 0.3 1 23 428 450 428 450 0.97
10 15 1.1e-07 4.1e-06 26.3 1.3 1 23 522 544 522 544 0.99
11 15 1.4e-05 0.00052 19.7 2.2 1 23 550 572 550 572 0.99
12 15 7.9e-06 0.00028 20.5 3.9 1 23 578 600 578 600 0.99
13 15 9.8e-05 0.0035 17.1 0.1 1 23 606 628 606 628 0.99
14 15 6e-08 2.2e-06 27.2 0.4 1 23 634 656 634 656 0.99
15 15 6e-05 0.0022 17.8 4.0 1 23 662 684 662 684 0.99

Sequence Information

Coding Sequence
ATGTTCTTGGTAGCCGAACTGTGTGCTCTTAGCAACAGTTGCAATCTGAATACAAACAAAGCGGTCAATCTTAGtaatttaCAGCACAGCATGGAAGAAGGGGAGCTGAAAGCAGATATCGACCTATCATCAGTGGCTTATGAAGATGAGATCACAGTTGCAAAACTGAAAGAAGATTCAGTTCCCATACCATTTGCCTCTgcagtaattaaagtaaaaGAGGAGTCATGGGATGGAAATGCTTCAATAAAGGAGGAAATGAAGGATGAGGTTATAACAGAAGATCATGTAGCGTTACAGGAGGGtGTGGATGTGTGCGCCAGTGATGAGGAAGTTGGTTCATCTTTCCGGACCCTTGATGAATGGCATGACAGAAAAATTGAATGTGACAGTATGAATAATGAGAATTCCAATTTAATTGCAGTGGATATGAAACCATATCTTATTGGACAGTTGAATCTTGACTCTGTACAGTGTGCCAAATCTGAATGGGAGCATGAAGTGGAACATACTCTTTTGAAGAGGGAGGAAAGATATcacaatgcaaaaatatataagaaaagtaaaaatcttGTTTTACATCTACCGAAACAGGTTGTAAAGAAGCTTTACAAATGTGATAtctgtagtaaaatattttcaaagagcAGCAACTTGATTCAACACAAACGGACACACACTGGGGAGAAACCTTTTAAGTGTGATGTTTGTAAAAAAGTGTTCGCACAGAGTGGAGCTTTATATACGCATCGCCATGTCCATACAGGAGACAAGCCCTTCTTATGTGACATTTGTAGTAAAGCTTTCTCCAGGAATACATACTTACTTCGACACCGACGTTCCCACACTGGTGAAAAGCCTTTCAAGTGTGATAGTTGCAGTAAAGTATTCTCTCAAAGGGATTGTCtacttgtacattttaaaatacacactggtgagaaacatttcagatgtgatatttgtaataaagtaTTTTCGCAGAGAGGGAGTCTCCGCACACATCACCTCATGCACAGTGGAGAAAAACCTTTTAAGTGTgatatatgttgtaaatttttctCAACAAAAAGTCaagttgttaaacatcgacggTCACATACTGGAGAAAAACCATATGGATGTGATGTGTGTTGTAAAGTATTTTCTCAAAGTAGAAGTCTCATCACACACCGGCGTACACACACGGGAGAAAAACCTTTCAAATGTGACGAATGTGTTGACACTTTTTTGAAGAGGGAGCATCTTGTTATACATCAACGCATGCACACAGGAGAACAGCCGTTCATCTGTGATATTTGTAGTAAAGTTTTTCCGCGTAAAGGAAGTCTTCTTAAACATTTACGATTACATTGTAAGTATCAAGTGAAATGTGAAATAACAGAAGAGTCATGGGATGATGAAACTGTAAGGGAAGAGACGGAAGGTGAAATTACCGCCGAGGGATCAGAATTATGCCGGGAGAGTGAAAAGCAAGTGGGGACTGAGCAGAAGGTGAATGTTGCCGCTCATTATTCTCATTCACAACTTGAAGTACAGTCCCAAAGGTATGGAAAGGATGGCCCTTTTAAATGTGAAGTTTGCGGTAAGAATTTTTCACTAAATTCATCTCTGAAGAGACATGCACGAACCCACACGGGAGAGCGACCTTTCAAGTGTGAAGTATGCGATTGGCAGTTCTTTGAAAGCGGTCATTTGAAGAGACATTATCGCATTCACACCGGGGAAAAGCCGTTTAAGTGTACAGTTTGCAATTTGAAGTTTGCCACGAACTGTAACCTCAGAGCGCATACACGTACACACACAGGTGACAAGCCGTACAAGTGCGGAATTTGTCTCAAGCAGTTTTCACAAGGTGGAGCTCTTCAGGTTCACACGCGGATCCACACTGGTGAGAGACCATATAAATGTGAAGAATGTGGTAAAGAGTTTTCAGAAAGTGGAAGTTTGAGGAAGCATTTGCGGGTCCATACGAAAGAAAAGccatataaatgtaacatttgcCAGAAACAGTTTTCTTTGAGTGGCTGTCTGTCAAaacattaccgtgttcacgcTGCAGAAAAGGCctataaatatgatttatataacAGATAG
Protein Sequence
MFLVAELCALSNSCNLNTNKAVNLSNLQHSMEEGELKADIDLSSVAYEDEITVAKLKEDSVPIPFASAVIKVKEESWDGNASIKEEMKDEVITEDHVALQEGVDVCASDEEVGSSFRTLDEWHDRKIECDSMNNENSNLIAVDMKPYLIGQLNLDSVQCAKSEWEHEVEHTLLKREERYHNAKIYKKSKNLVLHLPKQVVKKLYKCDICSKIFSKSSNLIQHKRTHTGEKPFKCDVCKKVFAQSGALYTHRHVHTGDKPFLCDICSKAFSRNTYLLRHRRSHTGEKPFKCDSCSKVFSQRDCLLVHFKIHTGEKHFRCDICNKVFSQRGSLRTHHLMHSGEKPFKCDICCKFFSTKSQVVKHRRSHTGEKPYGCDVCCKVFSQSRSLITHRRTHTGEKPFKCDECVDTFLKREHLVIHQRMHTGEQPFICDICSKVFPRKGSLLKHLRLHCKYQVKCEITEESWDDETVREETEGEITAEGSELCRESEKQVGTEQKVNVAAHYSHSQLEVQSQRYGKDGPFKCEVCGKNFSLNSSLKRHARTHTGERPFKCEVCDWQFFESGHLKRHYRIHTGEKPFKCTVCNLKFATNCNLRAHTRTHTGDKPYKCGICLKQFSQGGALQVHTRIHTGERPYKCEECGKEFSESGSLRKHLRVHTKEKPYKCNICQKQFSLSGCLSKHYRVHAAEKAYKYDLYNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-