Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:165583-175265[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.4e-06 0.00023 20.8 4.0 2 23 273 294 273 294 0.97

2 14 9.9e-07 3.6e-05 23.4 1.0 1 23 300 322 300 322 0.98

3 14 3.6e-06 0.00013 21.6 4.4 1 23 328 350 328 350 0.99

4 14 3.4e-05 0.0012 18.5 0.1 1 23 356 378 356 378 0.98

5 14 7.4e-06 0.00027 20.6 0.8 3 23 386 406 384 406 0.95

6 14 1.4e-05 0.00051 19.7 0.2 1 23 412 434 412 434 0.98

7 14 1.1e-06 3.9e-05 23.2 3.9 1 23 440 462 440 462 0.98

8 14 3.7e-06 0.00013 21.6 0.4 3 23 470 490 469 490 0.99

9 14 0.001 0.038 13.9 3.4 1 23 496 518 496 518 0.97

10 14 0.00018 0.0064 16.3 4.5 1 23 524 546 524 546 0.97

11 14 1.2e-06 4.2e-05 23.2 0.2 1 23 552 574 552 574 0.98

12 14 9.8e-07 3.5e-05 23.4 0.1 1 23 580 602 580 602 0.97

13 14 1.5e-05 0.00055 19.6 1.1 1 23 608 630 608 630 0.97

14 14 0.00016 0.0057 16.4 5.3 1 23 636 658 636 658 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.4e-06	0.00023	20.8	4.0	2	23	273	294	273	294	0.97
2	14	9.9e-07	3.6e-05	23.4	1.0	1	23	300	322	300	322	0.98
3	14	3.6e-06	0.00013	21.6	4.4	1	23	328	350	328	350	0.99
4	14	3.4e-05	0.0012	18.5	0.1	1	23	356	378	356	378	0.98
5	14	7.4e-06	0.00027	20.6	0.8	3	23	386	406	384	406	0.95
6	14	1.4e-05	0.00051	19.7	0.2	1	23	412	434	412	434	0.98
7	14	1.1e-06	3.9e-05	23.2	3.9	1	23	440	462	440	462	0.98
8	14	3.7e-06	0.00013	21.6	0.4	3	23	470	490	469	490	0.99
9	14	0.001	0.038	13.9	3.4	1	23	496	518	496	518	0.97
10	14	0.00018	0.0064	16.3	4.5	1	23	524	546	524	546	0.97
11	14	1.2e-06	4.2e-05	23.2	0.2	1	23	552	574	552	574	0.98
12	14	9.8e-07	3.5e-05	23.4	0.1	1	23	580	602	580	602	0.97
13	14	1.5e-05	0.00055	19.6	1.1	1	23	608	630	608	630	0.97
14	14	0.00016	0.0057	16.4	5.3	1	23	636	658	636	658	0.97

Sequence Information

Coding Sequence: ATGGTGGATACGAACATGGAAAAGAATGCCTCTTGTGAAAGTGATGAACATATTCTGAAAACTGTAGAATGTAAGATGTCgtcaaaaatgtgtttgttgaaATCGGATACGGAGAAATCATCTTGTAAAGTTGATGATCTTGTGTCCAAGGTCGTTTGTGGATCCAGTGGCATTTGTTGCGGTGTAGTAAAAGAAGAATACGAAATCTGTGATACCAATGGATTTTCTAGCACTGTGTTGTGTGGTGAAGAAATTGAGAACTTGATGCCGTTGGAATATGTAAAGGTTGAATTAAGTGATGAAAATGGCGAAACAGATGTGACTATTCAAAAAGTTGCAGCTAGACAGGAGGAGTTATGTCATAAGAATAAGAAAGCTTGTACTGTTGTAAACAAAACTAGTTTGTCTGCTTCTGATGAAAAAGCTGCAGGTAGTATAAACGAAGGGTCTTCGGAATCAGGTCAGGACATTGTTCAAAGTGAGGTTAAGGAAGAAACAATTAACAGTGCAGAGAAAAAgataaatactgaaaacaaaggaaattctGAGAGCAGTTCAAAGGACAGCCAGAGAGCATCTGATACAGAAGATATTCAGCTGTCAGAAAGGATTCTGAAATTAAAGTCTAAAGTTTCTGGGAAAAGAGCAAAGAAAAACCGTCATAAGTCGGGCgtttcaaaaatgaaaacgGAGCCTGTGGAACGAAAGGGCGCGGTTGTTCAGTCTGTTTCGAGGGCCAGCACTGCTCAGCTTGCGTCGCTGCTATTCCAGTCATCAAAGGTAGGGAGGGCAGCACGACCTGAAGGAGCTATTCCTACTTGTTCAATTTGCAGcaagacattttcaaataaaacccATCTAAATTCCCACATCAAACTTCATGATGGTGTGAAACCACATACGTGCGAGACATGTTCAAAGGCTTTTGCTCGGAAAGGAGATTTGGCCATACATATGAGGCGTCACACAGGCGAACGACCGTACGAGTGCTCTCAGTGCAAGAAAACGTTTGTGGAGAAGTCGCACCTCTTGAGACACACACGTAGCCACACAGGTGACAAACGTCACGTGTGTCCCGTGTGTGGAAGCGCTTTCTCAGAGCGAGCGGGCCTAGCAAAACACTTACGCTCCCACACTGGCGAACGTCCACATTTGTGCTCTGTGTGTGGTAAGTCGTTTGCTCAGCGCGAATTTTTGATTCGACATGCACGCATACATACAGGTGAGCGACCGTTTACATGTGACTTGTGTGGTAAAGCATTCTCAGATCGCTCGACTGCTGTAAAACACGCCAGATTACACACGGGTCTCAGACCATTCCCGTGTCCTCTTTGTGGTCGCTGTTTTTCACAGAAACAGCATCTGACAGGCCATCTGAAGACGCATGCTGGTGAACGTCCCCATGGGTGTGAAGTGTGCGGTAAGAAGTTTGGTCGGAAGAGTGATCTGGTGGTGCACACGCGACGTCACACAGGAGAACGTCCGCACAAATGCGAGGCTTGCGGTAAGACTTTCCTGGACCGCTCTCATCTGGTACGACATAACAAAGTGCATAGTGGTGCCAAGCCTCATGTGTGCCATGTGTGTGGGCGCTGCTTTGCGGAGAAGGGCCACTTGGATGGGCATCTGCGTGTTCACACTGGGGAGAAGCCCTACTCGTGTGACGTGTGTTCTCGAAGCTTTGCTGATCGGGGCACGCTGGTGAACCACATGCGTGTTCACACTGGAGAACGTCCCTTCGCCTGCCCCATTTGCAGCAAGGCATTTGCACAGAAAGGCTCACTGCTAAAACATGTTCGCATACACTCGGGGGAGAGGCCCTTCTCATGTTCTGTGTGTGGCAAAAAATTTGCAGACAAAGGTTATTTTGTTAAGCACTCCCGACTGCACACCGGTGAGAATCTGCACACGTGCGCTCTGTGTGGAAAGTTCTTTGCACAGAAATGTCATCTTATCAGGCACGCGAAGGTTCATGGAGTTCAGCCCGAAAGTGTAATTATGCCAATCGTAACTATTTAA
Protein Sequence: MVDTNMEKNASCESDEHILKTVECKMSSKMCLLKSDTEKSSCKVDDLVSKVVCGSSGICCGVVKEEYEICDTNGFSSTVLCGEEIENLMPLEYVKVELSDENGETDVTIQKVAARQEELCHKNKKACTVVNKTSLSASDEKAAGSINEGSSESGQDIVQSEVKEETINSAEKKINTENKGNSESSSKDSQRASDTEDIQLSERILKLKSKVSGKRAKKNRHKSGVSKMKTEPVERKGAVVQSVSRASTAQLASLLFQSSKVGRAARPEGAIPTCSICSKTFSNKTHLNSHIKLHDGVKPHTCETCSKAFARKGDLAIHMRRHTGERPYECSQCKKTFVEKSHLLRHTRSHTGDKRHVCPVCGSAFSERAGLAKHLRSHTGERPHLCSVCGKSFAQREFLIRHARIHTGERPFTCDLCGKAFSDRSTAVKHARLHTGLRPFPCPLCGRCFSQKQHLTGHLKTHAGERPHGCEVCGKKFGRKSDLVVHTRRHTGERPHKCEACGKTFLDRSHLVRHNKVHSGAKPHVCHVCGRCFAEKGHLDGHLRVHTGEKPYSCDVCSRSFADRGTLVNHMRVHTGERPFACPICSKAFAQKGSLLKHVRIHSGERPFSCSVCGKKFADKGYFVKHSRLHTGENLHTCALCGKFFAQKCHLIRHAKVHGVQPESVIMPIVTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00396502;
90% Identity: -
80% Identity: -