Znev008091.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zootermopsis nevadensis
Gene Symbol
-
Assembly
GCA_000696155.1
Location
NW:17159-35590[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0018 0.066 13.1 1.4 1 23 184 206 184 206 0.98
2 17 0.0048 0.17 11.8 3.3 6 23 216 233 212 233 0.97
3 17 2.3e-07 8.2e-06 25.4 2.6 1 23 239 261 239 261 0.97
4 17 9.6e-08 3.4e-06 26.6 0.5 1 23 267 289 267 289 0.99
5 17 7.8e-06 0.00028 20.6 2.0 1 23 295 317 295 317 0.97
6 17 2.6e-05 0.00095 18.9 4.7 1 23 323 345 323 345 0.99
7 17 8.3e-05 0.003 17.3 1.6 1 23 351 373 351 373 0.97
8 17 6.4e-07 2.3e-05 24.0 0.8 1 23 379 401 379 401 0.98
9 17 1.8e-07 6.4e-06 25.7 1.7 1 23 407 430 407 430 0.98
10 17 0.00012 0.0043 16.8 0.7 1 23 595 617 595 617 0.97
11 17 2.1e-06 7.6e-05 22.3 0.9 1 23 623 645 623 645 0.95
12 17 0.00093 0.033 14.0 2.2 1 23 665 687 665 687 0.96
13 17 8.8e-06 0.00031 20.4 0.2 1 23 693 715 693 715 0.96
14 17 2.6e-06 9.3e-05 22.1 0.1 1 23 721 743 721 743 0.95
15 17 2.8e-05 0.001 18.8 0.0 1 23 749 771 749 771 0.98
16 17 0.00014 0.005 16.6 0.2 1 23 777 799 777 799 0.95
17 17 4.1e-05 0.0015 18.3 3.1 1 23 805 827 805 827 0.97

Sequence Information

Coding Sequence
ATGTTTAATTCATATCGAAGTTGTGTGATGCcttatgaagaagaaattattaaggCAGACGAGTTGGGGAAAGATGATTGTATACTGGAACCAGAAGTAATTGTGACAGTCAAAGAAGAGGTTAAAGATGGGGAAGACAGTGGTAATTCTGTCATTGCAGCCCAACACGACTGTGCCATATCTTCTAATGAGAACTTCGAGTTTGTGGTGGTGAAAGATGAACCACAGGATGTTTCTTGTGGGGAGGATGATGGTCTCAGCATTGAAGTAACAGAGAGgaaTGCATTTGGTGTTTCAGAACATGGTTTActgcaaggaaaggcaaggaaTCAGGGAGAAGTTAAACCTGATAAAACTCAATCTATTGGCCTAGGGGTTGGAGCTGACAAAATCCATGATAGGAGTCAGCAGATTGCACCTCCTACAGTTCAGGAACCACTGGCTGGCCCTTCAACCAGTGGAGTTGAGAAGGTCATTTCACAAAATGACATCAAGCCTATTGGAATGCAAAAGTCAAGCAGTATTAGACTTCAAAGAACAATTGGCAAATTTATATGCAAACACTGTGGAAATATATTTGAGACATTTGTAGAATTTGAACTTCATGTCAAAACACACTTCAGTGAAAAACCATTTACTTGTCCATGTGGCAGAAGTTACATGCACAAAGGACATCTCAAGGAACATATGTTGACTCACACTGACCGAAAACCACACATGTGCACACAATGTGGTAAAAGTTTTGCACATAAAGGTGACCTAACTATTCACATGAGAATTCATACTGGTGAAAAACCCTATTCGTGTACAGAGTGTGGAAAAAGTTTCGTTCAAGGCGGACAGTTGAAAATGCATATGAGAACACACACAGGTGAGAAACCATATAGTTGTTCTGTTTGTGGTAAAAGTTTCGTACAAAAGCACAATATGCTAGATCATATGTTCCTACATACGGGAGAGAAACCATATAGTTGTACATtgtgtggtagaagttttgTTCAAGGTTGTCATTTGAAAGATCATATGAAAACTCACAGTGGGGAGAAGCCTCATTCATGTAGCTTTTGTGGAAAAAGTTTCTTGCAGAATAGTGATTTAAGAGTTCATGTTAGAGGTCATACAGGTGAGAAACCATTCAGCTGTAGTCAATGTGGGAAGAATTTTGCTCGCAGTGGAGTTCTGAAGAGACATATGTTAACTCATACTGGAGAAAAACCATACAAGTGCTCTCTCTGTGGTAAACAGTACACTCAAAGTAGCAAACTTAAGCGCCACATGATGATACTACATAATAAGGAGATTGTTCCTGAGACCACAAAAGTTCTTCTTTTGCCGAATTCTTGCAACAGAGAAGAAATACACCAAGATGATAATAATGAAGAGAGCAGAGTCCCTGATAAGAGAGAGGGTATAGGTCCTGAAAAAATAACTAAGGAATGTATATTACCTCATTGGTTCACTGTTGTGACAATGGCAGATTACTCCATACATGAGCAACTGTTGGAGCCAGAAATAATTCTCACAGTGAAGCAAGAGGAAGAAGTGGATCATTGTTCAAGCTCTTCAAATTTTAGTACcattcagaattacaaatatacgTTGATCAAGATGGATTCTTCAGATAAGCTTTCAGCAGGTGATGTCAGCTGTGCATCacattttggaaacaaattgagCTTTTGTGAATATGTAGTAAAGCAGTCAGGTGAGAACCCTGGTACTTCACTTTCACTACAAAATCCCAAGATGTCAACTGTGGACAGCCAACCCAGCAACAGGCCACATGTGTGTGATGTGTGTGGAAAGGACTTTCTGCTGCGAAGCAATCTCAAGCAGCACATGTTGGTGCACACAGGCATTAAACCCCATGTATGTTCAGAATGTGGAAAGGGCTTCACACAACTCAGCAATCTCAAGACACACTCCATAGTGCACACAGGGGAAAAGCCACATAAAGCACATGAATATATACACACAGGGGCAAAAAAGAGACACATATGTGAGACTTGTGGGCAGGGATTCTACCAGCATGGAGATTTAAAAACTCACAAATTAATACACACAGGTTATAAACCTCATGTCTGTAGTGAGTGTGGAAAGGGTTTCATCAAGAGAGGTGACTTGAATATTCACATGGTAGTACATAGTAAAGAACGACCTTTTGAATGTGAAGTTTGTGGGAAGACCTTTGCTCGCAGATGGAATCTCATTAATCATGCTGTAATCCATGCAGAGAAGAAACCATATGAGTGTGGCGAGTGTGGGAAAGGGTTTAATCAACTTGCAGGcctaaaaatacatacaatcaTTCACACTGGTGAGAAACCACATGCTTGCAGAGACTGTGGCAAGAAGTTTGGTAATATAGGTGCTTTGAACAGGCATGTCATAATACATACTGGAGAGAAACCATTTTCTTGTAATCTGTGTGGGAAAACGTTTGGTTTGAAACACCAACTAACAAGACATACTGCTAAGCATATTGTTGATAAACTTGTATGA
Protein Sequence
MFNSYRSCVMPYEEEIIKADELGKDDCILEPEVIVTVKEEVKDGEDSGNSVIAAQHDCAISSNENFEFVVVKDEPQDVSCGEDDGLSIEVTERNAFGVSEHGLLQGKARNQGEVKPDKTQSIGLGVGADKIHDRSQQIAPPTVQEPLAGPSTSGVEKVISQNDIKPIGMQKSSSIRLQRTIGKFICKHCGNIFETFVEFELHVKTHFSEKPFTCPCGRSYMHKGHLKEHMLTHTDRKPHMCTQCGKSFAHKGDLTIHMRIHTGEKPYSCTECGKSFVQGGQLKMHMRTHTGEKPYSCSVCGKSFVQKHNMLDHMFLHTGEKPYSCTLCGRSFVQGCHLKDHMKTHSGEKPHSCSFCGKSFLQNSDLRVHVRGHTGEKPFSCSQCGKNFARSGVLKRHMLTHTGEKPYKCSLCGKQYTQSSKLKRHMMILHNKEIVPETTKVLLLPNSCNREEIHQDDNNEESRVPDKREGIGPEKITKECILPHWFTVVTMADYSIHEQLLEPEIILTVKQEEEVDHCSSSSNFSTIQNYKYTLIKMDSSDKLSAGDVSCASHFGNKLSFCEYVVKQSGENPGTSLSLQNPKMSTVDSQPSNRPHVCDVCGKDFLLRSNLKQHMLVHTGIKPHVCSECGKGFTQLSNLKTHSIVHTGEKPHKAHEYIHTGAKKRHICETCGQGFYQHGDLKTHKLIHTGYKPHVCSECGKGFIKRGDLNIHMVVHSKERPFECEVCGKTFARRWNLINHAVIHAEKKPYECGECGKGFNQLAGLKIHTIIHTGEKPHACRDCGKKFGNIGALNRHVIIHTGEKPFSCNLCGKTFGLKHQLTRHTAKHIVDKLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-