Znev006263.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:43680-69704[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00024 0.0086 15.9 0.0 2 23 248 269 247 269 0.96 2 17 3.9e-07 1.4e-05 24.6 0.4 1 23 275 297 275 297 0.96 3 17 2.3e-05 0.00082 19.1 1.9 1 23 303 325 303 325 0.93 4 17 2.4e-06 8.7e-05 22.2 0.5 1 23 331 353 331 353 0.97 5 17 2.6e-05 0.00092 18.9 0.2 1 23 359 381 359 381 0.96 6 17 1.8e-06 6.5e-05 22.6 3.4 1 23 387 410 387 410 0.95 7 17 0.00075 0.027 14.3 0.1 1 23 417 440 417 440 0.93 8 17 3.1e-06 0.00011 21.8 1.3 3 23 637 657 635 657 0.97 9 17 0.00012 0.0044 16.8 0.9 1 23 663 685 663 685 0.93 10 17 3.1e-06 0.00011 21.8 1.3 3 23 841 861 839 861 0.97 11 17 0.00012 0.0044 16.8 0.9 1 23 867 889 867 889 0.93 12 17 5.8e-06 0.00021 21.0 4.6 1 23 1055 1077 1055 1077 0.96 13 17 1.6e-07 5.6e-06 25.9 0.5 1 23 1083 1105 1083 1105 0.98 14 17 0.00014 0.005 16.6 6.0 1 21 1111 1131 1111 1133 0.93 15 17 6.6e-06 0.00024 20.8 2.0 1 23 1139 1161 1139 1161 0.98 16 17 1.5e-07 5.4e-06 26.0 1.2 1 23 1167 1189 1167 1189 0.96 17 17 5.3e-06 0.00019 21.1 2.3 1 23 1195 1217 1195 1217 0.99
Sequence Information
- Coding Sequence
- ATGAGTACTCCTTGGAATTTCAGTGTTCAACAGGACTTGGAACAGCAACCGCTTAACATGGCGCTCCTCCTCTTACAACAAGAACTCGCAGAGCTAGGCTCTGGAGCCCCATGTGGCAGACAGATTTCAAAGGAGGAAGATCATGCTGAAAGTATTTCCCCTAAACATCTGGAACCAACAGTATACATTAAAGAGGAACCTCATTCTTTGTCAGTGGATTACTCATATCCTGCTATGCCTAATAACTTCAACATGATACCTCAAGCTTGGCCATCGTCACAGCCATTGCATCTGCAACGTGTGGAACAAACATTTCCAGACATGACTGAGAAGACTATCTTAAACTTAGATGATATTAAGGAGGAAGTTGAACCTGAAAAAGGCAATGTCTGTAGTGGAGGTTTCAATGAGACATCTGATTGTAATAAATGCAATGTGCCACAATACCCTGCAGAATCTCTCtgtagaaatgaaatGTATCAGAAAAGAATGTGCACAACAGAGAATTTATACCATTTCTCATCAGTTCCATTTTCTGGTCCTTCCACATGGTACAGTGTAAAGGCATTCACTGGAAAGGAGACAGTGAACAGATGGGATACTCAAGCAGAAAATGCAAGAAACTATAATAACTATTTTAGTGGCAGAAACATGCCTTCATCCCATATTGTGAATGGACATGGTTCATTGCAAGGGGAGATGGTTTATGGACCAATGGCACATGCTAATCATATCCCACTGATTTGTCAAGTATGTGGGAAAGGTTTCGGCATTAAGGAACAACTTTTGAATCATATGATGGTACATCGAAATCGGAAACCTCacatttgtgaaatatgtgaaaaaagTTTCAGTTCTCCTGGAAATTTGAAGACACACATTATGATACACACAGGTCAGAAGCCACACTCATGTGAGAAATGTGGCAAAAGGTTCACTACTTTGGGAAACCTAAAAACTCATTCTGTGGTCCATACTGCTGAGAAGCCACATCCATGTCAAGTGTGTGGAAAAGGATTTACAACTCTTGGAAATCTCAAGACACATTTACTAATACATTCAGGTGAGAGACCATATGTATGTGAAGTCTGTGGGAAACGGTTCACAACACGAGGCAATGCGAAGGCCCATTCAGTGACTCATACTGCAGAGAAACCGTTTGTTTGCCATGTGTGTGGCAAGAACTTCAGTCATAAAGGCAATCTAAAGACACATATTGTGTCCAGGCATATGGCTAATAAGCCACAATACGATTGTGTTATGTGTGGAAGAAATTTTACACAAGCAGAAACACTAGACACACATATAGCATTAGTACATGCTGCTACATCTCTACCTCTTTCCAGTTTGCAAGATGAGCTACAGTGTGAAGAGTCTCCAGCTTTCTTACCAGTGAAAGTGTATTATCATTTTAAAGAGGAGCTGTTACTGTGGTACTATTCATTAAATGGGAAGAGAGAAAGGGTGGATGCATATGATGGTCTTCCAACTCATGTTTGTCGACAGTGCGTAAATCAAGTTAATGTGTCCTACAATTTTAAAAGGCAGTGTGAAATCTCTGATGCAACTTTCCGGGAGTTACTGAAAAATCAGAGATTAAGTTCAGAATTTTCTGAGGGAAAAGTAAATGTATCCCAAAATTCTTTAAATCCAGCAGAAGACACTCCAGATGTCTGGGCACTTGTAAGAGTGAAAGCCGAATTGGCAGATTGTCAGTCAGATGAAAACAATGCTGAAGGTGGAATGGAACAAGTGTTTCCAACTGCAATATGTTCATTAACAGAACAAGGTCAAGATATAAGTTCCACTGCAATGGCTGAATCACCACTTAAGGAAGGCATAGAGGATGTTTCAAAAACCCTTAcagataatttacatttattccaCAGAAGCGAGAAACCTTATGGGTGTACAGAATGTGGAAAGCATTTCGCTCGGAGTGGTCAGTTGAAAGAACATATGAAACTTCACTTGGGCTTGAAGCCATTTATATGTATTGAGTGTGGAAAGAAGTTTGCCCAGAACATTCATTTGAAAAATCACTTAGCAACCCATGCATCTAGAAGGAAACCAAagGTGGATGCATATGATGGTCTTCCAACTCATGTTTGTCGACAGTGTGTAAATCAAGTTAATGTGTCCTACAATTTTAAAAGGCAGTGTGAAATCTCTGATGCAACTTTCCGGGAGTTACTGAAAAATCAGAGATTAAGTTCAGAATTTTCTGAGGGAAAAGTAAATGTATCCCAAAATTCTTTAAATCCAGCAGAAGACACTCCAGATGTCTGGGCACTTGTAAGAGTGAAAGCCGAATTGGCAGATTGTCAGTCAGATGAAAACAATGCTGAAGGTGGAATGGAACAAGTGTTTCCAACTGCAATATGTTCATTAACAGAACAAGGTCAAGATATAAGTTCCACTGCAATGGCTGAATCACCACTTAAGGAAGGCATAGAGGATGTTTCAAAAACCCTTAcagataatttacatttattccaCAGAAGCGAGAAACCTTATGGGTGTACAGAATGTGGAAAGCATTTCGCTCGGAGTGGTCAGTTGAAAGAACATATGAAACTTCACTTGGGCTTGAAGCCATTTATATGTATTGAGTGTGGAAAGAAGTTTGCCCAGAACATTCATTTGAAAAATCACTTAGCAACCCATGCATCTAGAAGGAAACCAAagCTGTTCTTAGGCGATGGTTTACCAGCACAGGTATGTCGGCAATGTGTCCGGCTGGTAAATACATCATACAAATTCAAGCAGCAATGTGAAAGTTCAGATGCAGCATTGCGTCATGATTGTGATCAAAGATTATCTGATGAAGAAACTCtcagttacaaaaatgaatGGAAAAATCCACAGGCAGGACCTTCAACTGTGGAGAATAAAGACTGTCACAAGAAACTAAAAAAGGGTaatatttcttcaagaaagCATGTGAAAGAAAAGAGAAGTGGAAAGAAATTTGCATCATATGATGTTTTGAATGATCAAAGTGACATAAAAGCTGAAAatgaaaaaacaaatgaatctgAAAACTTTGTCAGTGTTAAAAACCCAGGGAGAAATGatagtaatgaaatattaagtGATGTGAAAATTGAGCCTGTTATTAAATTAGAAGTGAAAGTTCCAAAGATCAAGGAGAAGAAAAGTTTTCTGTGTCATGACTGTGGAAAGAACTTTGCCCGTAAGCAGcatttattattgcatttaaGAACTCACACTGGTGAGAAACCATTTTCATGTAAAGTTTGTGGTGAAAGTTTTGGTATGAGTAGTAACTTGAACAAACACATGAGGATACATACAGGAGAGAGGCCGTTTCTTTGTACGATGTGCGGTAAGTGCTTCGGTAGGAGCGACACACTTACTAAGCACATGAGATGTCATACTGGTGAGAAACCATTCCATTGTAACGTATGTGGTAATAACTTTGGGCGCAGTAGCACGTTAATAAACCACATGCGAACACATTTAGGAGAAAAACCATATTTATGTACGGAGTGTGGTAGGAGATTTGTTCAGAGCTATGATCTAACGAAACACATGAGATCCCATACTGGAGAGAAACCTTATCGATGCACGGTGTGTCGTATGAGTTTCGGACAGAAGAACAGCTTGAATAAACATATGAGAAGTCATACAGGTGAAATTCCGTTTGCACCTATAGATTTTCAGAGGACAGTGTCATATGTTCATTACAGACCATCTGTAGCCGATTTGACGATGGACAGGAATGCAGTGTTAATTGGAGGTGGGCCCCAGATACAGTGA
- Protein Sequence
- MSTPWNFSVQQDLEQQPLNMALLLLQQELAELGSGAPCGRQISKEEDHAESISPKHLEPTVYIKEEPHSLSVDYSYPAMPNNFNMIPQAWPSSQPLHLQRVEQTFPDMTEKTILNLDDIKEEVEPEKGNVCSGGFNETSDCNKCNVPQYPAESLCRNEMYQKRMCTTENLYHFSSVPFSGPSTWYSVKAFTGKETVNRWDTQAENARNYNNYFSGRNMPSSHIVNGHGSLQGEMVYGPMAHANHIPLICQVCGKGFGIKEQLLNHMMVHRNRKPHICEICEKSFSSPGNLKTHIMIHTGQKPHSCEKCGKRFTTLGNLKTHSVVHTAEKPHPCQVCGKGFTTLGNLKTHLLIHSGERPYVCEVCGKRFTTRGNAKAHSVTHTAEKPFVCHVCGKNFSHKGNLKTHIVSRHMANKPQYDCVMCGRNFTQAETLDTHIALVHAATSLPLSSLQDELQCEESPAFLPVKVYYHFKEELLLWYYSLNGKRERVDAYDGLPTHVCRQCVNQVNVSYNFKRQCEISDATFRELLKNQRLSSEFSEGKVNVSQNSLNPAEDTPDVWALVRVKAELADCQSDENNAEGGMEQVFPTAICSLTEQGQDISSTAMAESPLKEGIEDVSKTLTDNLHLFHRSEKPYGCTECGKHFARSGQLKEHMKLHLGLKPFICIECGKKFAQNIHLKNHLATHASRRKPKVDAYDGLPTHVCRQCVNQVNVSYNFKRQCEISDATFRELLKNQRLSSEFSEGKVNVSQNSLNPAEDTPDVWALVRVKAELADCQSDENNAEGGMEQVFPTAICSLTEQGQDISSTAMAESPLKEGIEDVSKTLTDNLHLFHRSEKPYGCTECGKHFARSGQLKEHMKLHLGLKPFICIECGKKFAQNIHLKNHLATHASRRKPKLFLGDGLPAQVCRQCVRLVNTSYKFKQQCESSDAALRHDCDQRLSDEETLSYKNEWKNPQAGPSTVENKDCHKKLKKGNISSRKHVKEKRSGKKFASYDVLNDQSDIKAENEKTNESENFVSVKNPGRNDSNEILSDVKIEPVIKLEVKVPKIKEKKSFLCHDCGKNFARKQHLLLHLRTHTGEKPFSCKVCGESFGMSSNLNKHMRIHTGERPFLCTMCGKCFGRSDTLTKHMRCHTGEKPFHCNVCGNNFGRSSTLINHMRTHLGEKPYLCTECGRRFVQSYDLTKHMRSHTGEKPYRCTVCRMSFGQKNSLNKHMRSHTGEIPFAPIDFQRTVSYVHYRPSVADLTMDRNAVLIGGGPQIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -