Znev011128.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:730282-736778[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.017 0.62 10.0 0.2 1 23 119 141 119 141 0.92 2 21 1.3e-05 0.00046 19.9 0.4 1 23 147 169 147 169 0.96 3 21 0.00086 0.031 14.1 0.4 1 23 175 197 175 197 0.97 4 21 0.00012 0.0045 16.8 3.0 1 23 203 225 203 225 0.96 5 21 0.0016 0.057 13.3 4.2 1 23 231 253 231 253 0.96 6 21 3e-06 0.00011 21.9 0.6 1 23 259 281 259 281 0.97 7 21 3.8e-06 0.00014 21.5 5.4 1 23 287 309 287 309 0.98 8 21 1e-05 0.00036 20.2 0.5 2 23 316 337 315 337 0.95 9 21 1.4e-06 4.9e-05 22.9 0.7 1 23 343 365 343 365 0.97 10 21 0.00027 0.0096 15.7 1.7 1 23 371 393 371 393 0.96 11 21 6.8e-05 0.0024 17.6 3.1 1 23 399 421 399 421 0.96 12 21 0.00016 0.0058 16.4 1.0 1 23 427 449 427 449 0.95 13 21 5e-05 0.0018 18.0 0.3 1 23 531 553 531 553 0.96 14 21 6e-06 0.00022 20.9 0.5 1 23 559 581 559 581 0.96 15 21 0.015 0.54 10.2 1.4 1 23 587 609 587 609 0.91 16 21 4.4e-07 1.6e-05 24.5 0.8 1 23 615 637 615 637 0.98 17 21 0.00053 0.019 14.8 1.7 1 23 643 665 643 665 0.96 18 21 0.0042 0.15 12.0 1.2 1 23 671 693 671 693 0.97 19 21 4e-05 0.0014 18.3 4.4 1 23 699 721 699 721 0.97 20 21 3.1e-05 0.0011 18.7 0.8 1 23 727 749 727 749 0.96 21 21 1.5e-05 0.00055 19.6 1.5 1 23 755 777 755 777 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGGAAATTAACTCATTGGAACATGGAGTGTGTTTCAATGTTCCTCCTATGAGGGGAGAAGGACAAGATGAATTTGCATTGCAAGATTATGGAGGTTGTCTTAAAGACCTAGGAGGGAGCAGTTTGAACTTGGTTTCCAGTCAGCAAAGTGTTACAAACTTGGCTGCTGTTCAGCAAAGTGGTATGAATATGGTTTCTGCTCAGCCAAGTGGTTTCAGTATGGTTTCTGGTCAGCAGAGTGAATTATCCTTTGCTTCTGGTCAGCAAGGCAATGAAAGAATTGTAACTTCACAGACGCAACATAATATATCTATGGGCAATCAGTCATTGACTCTTGCAGGAGGGTCATATGATTGTAATGTATGTGGACAGCAGTTTCAATTTCTTCCTGACTTAAGGACGCACTCTGTTATTCATGTGCGACAGCGCCCTCATGAATGTGTTGCCTGTGGGAAGAGGTTTATATTTCCAAGTGACCTGAAGAGACATATTCTTATTCATACAGGGGAACGTCCTTTTGAGTGTAATGTGTGCGGTAATAAGTTTAGAAAATTGAATGTTCTGAAGCGACATGCACTGATACATACTGGAGAACGTCCACATGAGTGCTCTGAATGCTCAAGGAAGTTTAGAGACATTACTGACCTGAAGAAACACATGCTCTTTCACACTGGAGAACGTCCACATGAATGTAATCTTTGTGAAAAGAAATTTACTCTGATATCACACCTAAAGAAACATTCACTTATTCATACAGGTGAACGTCCTCATGAATGTGGCGAATGCGGTAAGACATTTATACGAGTAAGCGATCTCAAAACACATACCTTGATACATACAGGGGAACGTCCACATGAGTGCAGTGTGTGTGGCAAGAAGTTTAAGTTGTCATCTCATCTCAGGAAACACACCCGAATCCACACAGGAGAACGTCCTCAGGAATGCAGTGTATGTGGTAAGAAGTTTACATTTCCTAGTGATCTGAAGACACATTCTCTTATCCATACAGCAGAGCGACCACATGAGTGTAATGTCTGTGGTAAACGATTTACTTTTCCTGGTGATCTAAAGACACACTTACTGATTCACACTGGAGAACGGCCTCATGAATGCTCAGTATGTGGGAAAAAATTCATGCGGGTAACACTTCTCAAGAAACACTCTCTAATCCACACAGGACAACAACTTCATGAATGTACTGtatgtaacaagaaatttacaCGATTAACTCTGCTTCGGAAGCATTCGTTGATTCACAGGGAAGTGCTGCCACATGAATGTGCTGTGTGTGGGAAGAAGTTTACTTTTGCTAAggaattaaaaatgcattcttTGATTCATGAAAATGAACAGCAACACCACCAACAACTGCAGCAACATCATCAACAGCAATATCAGCAACAGCAGCAACTGCAACAACTGCAGAATCAGCAACAGCAGCTACTTCAGGAACAGCATCAGACtccacaacagcagcagcaaaaCCAGCAACATCATCAAAATCAGCAACCACAGCAGCACAATTGGCAACACCTTCCACAGAATCAGCAACAACCTCTTGCATTGCAGTCTCCTCAACAGTCTTACGACTGTAATGTTTGTGGGAAGAAGTATCCATCTTCTACTGAACTAAAGTCACATTCACTAATTCACGTGGGACAACGGCCACATGAATGTGATGTGTGTGGTAAACGATTTGCATTTCCTAGTGATTTAAAAGCACATTCTCTATCCCACACGGGGGAACGACCACACGAATGTATTGTATGTGGTAAAAAGTTCAGTAAGCTAAATGTACTGAAAAGACATTCGCTGATTCATATGGGGGAGCGACCTTATCAGTGCAATGAGTGTGATAAGAAGTTTAGAGAATCAAGTGACCTGAGAAAACATGCACTCATCCATTCTGGACAACAGCCTCATGAATGTACTGTGTGTAAGAAGAAGTTCATTTTGATGTCTCAGCTGAAGAAGCATGCTGAAATTCATACAGGAATTAGACCTCATGAATGTGCTGTGTGCAGTAAGAAGTTTTTACGGTTGTCAGACCTTAATACACATACCCTCATACACACTGGCGAACGCCGACACGAATGTACTGTGTGCGGAAAGAAGTTTACGCTCGTTTCTCATCTTAAGAAACATTCTCGAATCCACACGGGAGATAGACCTCATGAATGCGCCGTATGTGGTCGAAAGTTCACATTTCCCAGTGACCTGAAAACTCACTCCCTTATTCACACTGTTGAACGTCCTCATGAATGTACTGTATGCGGTAAAAAGTTTATCTTTCGTAGTGGTCTCAAAATACACACGCAGGTACATGCTGGTGAATGA
- Protein Sequence
- MEEEINSLEHGVCFNVPPMRGEGQDEFALQDYGGCLKDLGGSSLNLVSSQQSVTNLAAVQQSGMNMVSAQPSGFSMVSGQQSELSFASGQQGNERIVTSQTQHNISMGNQSLTLAGGSYDCNVCGQQFQFLPDLRTHSVIHVRQRPHECVACGKRFIFPSDLKRHILIHTGERPFECNVCGNKFRKLNVLKRHALIHTGERPHECSECSRKFRDITDLKKHMLFHTGERPHECNLCEKKFTLISHLKKHSLIHTGERPHECGECGKTFIRVSDLKTHTLIHTGERPHECSVCGKKFKLSSHLRKHTRIHTGERPQECSVCGKKFTFPSDLKTHSLIHTAERPHECNVCGKRFTFPGDLKTHLLIHTGERPHECSVCGKKFMRVTLLKKHSLIHTGQQLHECTVCNKKFTRLTLLRKHSLIHREVLPHECAVCGKKFTFAKELKMHSLIHENEQQHHQQLQQHHQQQYQQQQQLQQLQNQQQQLLQEQHQTPQQQQQNQQHHQNQQPQQHNWQHLPQNQQQPLALQSPQQSYDCNVCGKKYPSSTELKSHSLIHVGQRPHECDVCGKRFAFPSDLKAHSLSHTGERPHECIVCGKKFSKLNVLKRHSLIHMGERPYQCNECDKKFRESSDLRKHALIHSGQQPHECTVCKKKFILMSQLKKHAEIHTGIRPHECAVCSKKFLRLSDLNTHTLIHTGERRHECTVCGKKFTLVSHLKKHSRIHTGDRPHECAVCGRKFTFPSDLKTHSLIHTVERPHECTVCGKKFIFRSGLKIHTQVHAGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -