Znev002673.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zootermopsis nevadensis
Gene Symbol
-
Assembly
GCA_000696155.1
Location
NW:101849-320991[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.15 5.5 7.1 3.3 2 23 294 314 293 314 0.93
2 24 6.4e-06 0.00023 20.8 1.9 2 23 318 339 317 339 0.97
3 24 0.00043 0.016 15.1 0.6 6 23 349 366 348 366 0.99
4 24 4.7e-05 0.0017 18.1 3.4 1 23 372 394 372 394 0.99
5 24 1.8e-05 0.00063 19.4 2.4 1 23 400 423 400 423 0.97
6 24 0.024 0.87 9.6 2.5 1 23 429 451 429 451 0.97
7 24 0.00092 0.033 14.0 0.8 3 23 459 479 457 479 0.96
8 24 9.4e-06 0.00034 20.3 2.0 1 23 485 508 485 508 0.97
9 24 1e-07 3.7e-06 26.5 1.3 1 23 516 538 516 538 0.99
10 24 5.8e-05 0.0021 17.8 0.2 1 23 544 566 544 566 0.97
11 24 4.9e-06 0.00018 21.2 2.3 2 23 573 594 572 594 0.96
12 24 1.6e-06 5.8e-05 22.7 1.7 1 23 600 622 600 622 0.96
13 24 4e-06 0.00014 21.5 1.4 1 23 628 650 628 650 0.99
14 24 3.2e-05 0.0012 18.6 0.6 3 23 754 774 752 774 0.97
15 24 7.7e-06 0.00028 20.6 1.3 1 23 780 802 780 802 0.97
16 24 7.7e-06 0.00028 20.6 1.6 1 23 808 830 808 830 0.98
17 24 0.00028 0.0099 15.7 0.5 1 23 836 858 836 858 0.98
18 24 1.5e-05 0.00053 19.7 2.1 1 23 864 886 864 886 0.98
19 24 1.7e-05 0.00061 19.5 1.4 1 23 892 915 892 915 0.98
20 24 1.3e-05 0.00047 19.9 0.9 1 23 925 947 925 947 0.97
21 24 5.3e-05 0.0019 18.0 1.0 1 23 953 975 953 975 0.95
22 24 1.4e-05 0.00049 19.8 2.3 2 23 982 1003 981 1003 0.96
23 24 1.5e-06 5.3e-05 22.8 2.5 1 23 1009 1031 1009 1031 0.97
24 24 1e-05 0.00037 20.2 3.1 1 23 1037 1059 1037 1059 0.98

Sequence Information

Coding Sequence
ATGTCTTCTTTAAATTATATGGAACTTTGCCGTCTTTGCCTAGTAAAAGAACGAGTGTCGATTCCAATTTTTGAAGGAGAAGGAGATGTGCGCCAGATATATCTTAAAATAGCGTCATGCCTCCCAGTAAAGGTTGCAAGGGATGACAAACTCCCAAAGAAGATCTGTGATGACTGTATGTATAAATTAGACAATGCATACCAGTTTTGGAATATAACTGCTAATGCAGAAAAGCAGTTATTGCAATGGCTTGGTGAAATTACCAGTGATGACAAGAAGAGTGTCCCTAGCAACACAATAGAAACTGAGCAGTTGGTGTTGAAAGAGGAGGCAGTAGAACAAGATCAAGGATCAGAATTGGCCAAGAGTCTTAGTCGAGTAGAGGCTGTGTTGGCTGATGATGATAGAGGGGGAAGTGAGGATGAGGAAGAGTCAGAGAGTGAGGATGAAGGTTCAAACAGTGAGGacagtggtgatgatgatgatgacgatggtggtggtggtgaggCCCCTAGTAAGGAAGAAGCTGAGTCAGATGAAGAGCCATATGAACCTTTGGAACCAACAACGTTTGTTAATGTGTCTCTGGCGGGAAGTGATGAAGCTGGACCTTCAGGAatacaacagcagcaacaacaacagcaacaaagTCAGCAGCAAAGCCAGTCATCACAGCTTGTTCAGCAGTCATCACAATCACAGTTCCTCACTCCGGGAGCACCGTCCACAAGTACAGCTGCTGCACCTGCTTCAGCCAGTGGGTCTGCAAGTTTTGGAAAATCTGGAGGCAAGAAAATCAAAACCAAGGACAAGATCATCCTCAAAGCTAAGAGCCAGAAAATGTCTGCTAGATATCTGAGAAGTAATCAGAACATGATAAGGTGTGAAGAATGTGGACAGAGTTTCCATAAGTGGGAGCTAGTCTGTCATAGACAGACTCACAAATCACTGTCCTGCACATTCTGTAACAAGACTTTCTCACTTAAAAGCAAACTCATATCACATATGAGAATTCACAGAACTGTAAAGGAATTCAAATGTGCCTGTGGTGTGGTGTTCCATTCAAGCTCAGAGTTGAAGCGACACATGAAGAGCCATGTTCCTCCAAAAGAATACAAGTGTGAGGcttgtgataaaatgtttttctcaAATCAGCACTTGCAAAATCATGTAAAGACCCATGCCAAAGAGCGTCCATACGTGTGTGATATTTGTCACAAAACTTATAAACGTAAATATGAGCTCACAGGGCATAAGAAGATTGTTCACACTGCAGAGAGCAGACATGAATGTGATATCTGTGGGTTTTCAACATTATACAAAGCCAATCTGGAGGTACATCACAAGAGACACCTTAATGAATTTAGGTTTTGGTGTGATATCTGTAAGAAGGGATTTTACACAAATTCAGAGCTGCAGGGACATAAGAATTTTCACACAAATCAAAAGCCTCATCAGTGTGACATATGTGGCAAGGCATTCCTCTACAAGTCAAACCTGTGGAAGCACCAGAAAAGTAACCACCCAGGAAAGGATTCAAAACATTATCAATGCAGTGTCTGTGGTAAAAACTTCCCTTTTAAGAGCTCGTTGACATCACACATGAACACTCACACAAGGGAGCTGAAATTCATTTGTGATGTGTGTGGGAAAGCCCTCTCAAGCAGCATGTCACTCAAGGCCCACAAACGGCTGCACACAGGTGAGAAACCATGTGTCTGCACCATTTGTGGGAAGGCATTCACCAAGAGCTTCACTCTCAAAGTGCATCAGCTCACCCATACAGGGCAGAAGCCCCATGCTTGTGACATCTGTGGCAAGTCATTTACACAGCGCTCCACTTTGGTTGTGCACAAACGCTATCACACAGGGCAGAGACCCTACCAGTGTCAAGTGTGCAGCAAAGGCTTTGTATCCAAGACATTGCTCAACACTCATCAAAGGAGTCATGATCAGGCATGCTTTTTCCACCTGCTTGTCCAGTTATTGAAAAAGAGAGGGCAAACCTATGCTGGAACATTGAGGAGCAACAGGATTGAAATTCTATTAGAGATCTTGGCACACAGGTCTGCAAGTCAGAGTCTTGGTGAGAGCACAAGGGGCTCCAAGGAAAAAAGTGTCTTGAAAACTAAAGCACCTTCCAAAGCCAGCAGTGAACCTGTCCATAGAAGCAAGAAGTTCAGGGACTGTGGAAAAATGTCCAGCAAACAACAAATCATTACCCACAAGAACAGTTGTGAGACATTAGGTGCCATCATTTGTTCAACATGTGGCAAGACATACAAGAGCAAAGCAAAACTAGACCTACATATAAAGACACATGTATCTCCAAAGGTATTCAACTGTGCTTCTTGTGAAAAAGTAtttgtaacaaacaaacaacttacAAGTCACATGAAAACACATACTAAAGAACGCCCATACATGTGTGAGATTTGTAACAAATCATACAAACGGAAATATGAACTCACAGGTCACAAGAAAGTGCACACTGGTACAAAGAACCATGTTTGTGACATTTGTGGCTATGCTACTATGTACAAAGCTTACTTAGAAATTCACCAGAGGAGACATTTCAGTGAGTTCCGTTTCAAGTGTCACTTATGTGGTAAAGGTTTTTACACTAATTTTGAACTGCAAGCACATAGCAATGTTCACACTGGTGAGAAACCCCACCAATGTGACATATGTGGCAAAGCATTTCTGTATAAGGCCAATCTGCTCACACATCAGCGGACAAATCACCCAGACATGCAGAAGGATGCCAAACGCTTCCAGTGTGAGACGTGTGGGAAAAACTTCCCATACAAAAAGAACCTCCTGTCACATCTCGGTTCCCACACAGGCGAAACTCAGTTCTTGTGTGATGTTTGTGGAAAATCACTGACCAACAGCCGTTCGCTCAAACTCCACAGACGACTACACACCGGTGAGAAACCTTGTATCTGCACTGTGTGTGGGAAGGCATTTACCAAGAGTTTCACTCTAAAAGTGCACCAGCTCACCCATACAGGTCAGAAACCCCACTCATGTGACATTTGTGGGAAGTCATTCACACAGCGCTCTACTCTTGTTGTGCATAAACGCTATCATACAGGGCAGAGACCTTACCATTGTCAAATCTGCAACAAAGGGTTTGTGTCCAAGACGTTGCTGAACACTCATCAAAGGAGTCATGATAAGAGCTACTTCTTTTCTCTGTGA
Protein Sequence
MSSLNYMELCRLCLVKERVSIPIFEGEGDVRQIYLKIASCLPVKVARDDKLPKKICDDCMYKLDNAYQFWNITANAEKQLLQWLGEITSDDKKSVPSNTIETEQLVLKEEAVEQDQGSELAKSLSRVEAVLADDDRGGSEDEEESESEDEGSNSEDSGDDDDDDGGGGEAPSKEEAESDEEPYEPLEPTTFVNVSLAGSDEAGPSGIQQQQQQQQQSQQQSQSSQLVQQSSQSQFLTPGAPSTSTAAAPASASGSASFGKSGGKKIKTKDKIILKAKSQKMSARYLRSNQNMIRCEECGQSFHKWELVCHRQTHKSLSCTFCNKTFSLKSKLISHMRIHRTVKEFKCACGVVFHSSSELKRHMKSHVPPKEYKCEACDKMFFSNQHLQNHVKTHAKERPYVCDICHKTYKRKYELTGHKKIVHTAESRHECDICGFSTLYKANLEVHHKRHLNEFRFWCDICKKGFYTNSELQGHKNFHTNQKPHQCDICGKAFLYKSNLWKHQKSNHPGKDSKHYQCSVCGKNFPFKSSLTSHMNTHTRELKFICDVCGKALSSSMSLKAHKRLHTGEKPCVCTICGKAFTKSFTLKVHQLTHTGQKPHACDICGKSFTQRSTLVVHKRYHTGQRPYQCQVCSKGFVSKTLLNTHQRSHDQACFFHLLVQLLKKRGQTYAGTLRSNRIEILLEILAHRSASQSLGESTRGSKEKSVLKTKAPSKASSEPVHRSKKFRDCGKMSSKQQIITHKNSCETLGAIICSTCGKTYKSKAKLDLHIKTHVSPKVFNCASCEKVFVTNKQLTSHMKTHTKERPYMCEICNKSYKRKYELTGHKKVHTGTKNHVCDICGYATMYKAYLEIHQRRHFSEFRFKCHLCGKGFYTNFELQAHSNVHTGEKPHQCDICGKAFLYKANLLTHQRTNHPDMQKDAKRFQCETCGKNFPYKKNLLSHLGSHTGETQFLCDVCGKSLTNSRSLKLHRRLHTGEKPCICTVCGKAFTKSFTLKVHQLTHTGQKPHSCDICGKSFTQRSTLVVHKRYHTGQRPYHCQICNKGFVSKTLLNTHQRSHDKSYFFSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-