Zimm001670.1
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- -
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010000249.1:32962-39170[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.79 46 4.5 1.3 2 22 33 53 32 53 0.90 2 14 5.2 3e+02 1.9 1.4 1 23 207 229 207 229 0.79 3 14 7.8 4.5e+02 1.4 0.3 1 9 406 414 406 428 0.72 4 14 0.00041 0.024 14.8 0.4 1 23 535 557 535 557 0.98 5 14 0.0045 0.26 11.6 3.0 2 23 566 587 565 587 0.96 6 14 0.015 0.85 9.9 2.4 1 23 613 635 613 635 0.96 7 14 0.062 3.6 8.0 5.6 1 23 642 664 642 664 0.99 8 14 0.37 22 5.5 4.2 1 23 767 789 767 789 0.96 9 14 1.3 72 3.9 0.4 1 23 862 884 862 884 0.92 10 14 0.0016 0.094 12.9 1.7 1 23 890 912 890 912 0.98 11 14 0.002 0.11 12.7 2.5 1 23 1048 1070 1048 1070 0.98 12 14 0.00093 0.054 13.7 3.5 1 23 1076 1098 1076 1098 0.99 13 14 0.079 4.5 7.6 0.7 1 23 1179 1201 1179 1201 0.98 14 14 0.017 0.97 9.7 4.0 1 23 1211 1233 1211 1233 0.96
Sequence Information
- Coding Sequence
- AGTAAATGTTTAACAGAACATGCCACCCATGAAAAAATATGCGGTAaagaattgaataatgtaCAGATATTACATCCGacatttttaaaatcaacacGTTGTCCATATTGTCGACAACGTTGTAAAACAAATGCAATATTAGATAATCATTTACAAACATGTCCTGAAGCTATAAAAGCAACAATTAAAACTGAAGATATTGAATCagataatgaattgaaaattgatgaaagCCAATCAGATGATaatgattcaattataaataataataatagtaataagcCACATCCAATGGAGAATCGTGTATTTGTATGGAATAATATAACAGTACCAATGGATATAGAAGTTGATGATTCAAAATATGAATATCaagatgataaaattgatgataatatatcattagatttatCAATAAGAACACAATCACCTGGTGGTAGTGATAATAGTTATACAATTTGTCaagattatattaataatacaatccaacaacaacaacaacaacaatcaccaataacaataacagcaactactactactacaacaacaacaacaacaacgacaagtGATAAAATTCCAACACATGGTAATGATATATCAATTGCACAACATAAACGTGTATTTAAATGTCCACATTGTTCATTTTGGGCATCGACAGCATCCCGTTTCCATGTACATATTGTTggtcatttaaataaaaaaccattTGAATGTTCTTTATGTGCATATCGTTCAAATTGGCGTTGGGATATAACTAAacatattaaattgaaatcggTACGTGATCCAGCCCATGAAAGTGCTAAAGTTTTAATGACTGATGAAACTGGTAGAcgtaattatacaaaatataataaatatttaactgaAATACATGTTAGTGGTGATCAAAGTATGGAAACTAGTGGTGGTTCCGGTACAAgacataaacaacaacaacaacaacaacaacacgatagtaataattatcgtaattcatcatcaacatcaccatcatcatcatcgtcatcatcatcacctaataatcaaaataataagaatgattTACCGAAATTAACAAGAGCACCAGCTGATTTAaatctatcattatcatcatcaccatcatcattattattaagaaataataGTGGTAATTTACGACCACCACCGCCATTAAAAGCTGCCGAtggtatatattttgataagaaaCGTAATGGTACAGAAAATAAACGGACtttatttaaatgtaaaaaatGCAATTTCAGAGATGCATCAAGAGAGATCCTATTAGCGCATGTTAAAGGCCATTATccgcaacaacaaaatatattaaattcatcaataccatcaacaattaataataataatcaagatgtGAATTTGCGAAGTGTCAGTCCAGAGAAAGATGAGGCAAGTGTTAGCACATTAGCGAAAGGGAGTCAAGCACCCTTCCGCTGTGGTCACTGCAACCAGGTATCAAACTGGAAGCATGTCATTCAGcGTCATTGTCGTTTGAAGCATAGCGGTGATATACGAGTGGTTAGTAATAAAAATGGTCAagagaaattagaaattgaagaaCAAACAGATGAACCGGATCATATGGATGTAGCACAAGATGGTGCATATAAATGTAATACATGTCCATATTCTAGTGATAATCAAAATGATTTAACTGAACATTTGAATGGCCATTTACCATCTAGTGATAGTATAATGAAATgtcattattgtaattattttgttacaaGAAAAGATGAATTACTCGATCATTTCAAATTGCATGGTATCGATGATCCAGAtgatttctttaataaaatcatgGATCGCAATAATAGTGATGGTGATATAGGGAAACGATTTCGTTGTTTAATTTGTCCTTATGTAACAAATTCCAAATCCCAATATACTTATCATAAACAATTTCATAAGCCAAGAGGTGGTCAATATACATGTACACAATGTTCATATAATGTTAGTAAACGACATTTATTACATCAACATTTAAAAGTGCATGGTATTAATGTGGCaccattaaaacaaaatggtgaaataatcgatttagacgaaattaatgatgaaattgaagaaataacaacaacaacaacaacaacaactaatcataataataatcaatttgataTGCAAACATTTAGTGATATACCATTGGTATGGGTATCGAAGAATggtaaattttcgaaaatgttCAAATGTCGATATTGTCCGCATGTTAATCTACGTAAAGTTAATATACAAGAACATGAAAAGATGCATAGTGTTCGAGAGAAGAATCCGAATTCGTCACGTTCAAATGATACCGAACATCATTGTACTGAATGTAATTATGTTTGTAATAATGCTGGTGTATTATCATCGCATTCGAAAGTCCATCAAGGTCTATATGGTACAGTTCATTGTTTAGTTGATCCAATTAAATCCGATGAAGAACAAATACGTGAATtaagtaaatatttgaatcCAACAATGTCACAAATGgttgaaacaatcaatttagATGATTATGATAATGCCGAAAGTTCAGTTATAAtgttgaatgataataatattgatgatacatcatcaattgatgataataataattatttatatttttgtaaagaATGTCCAGCTAGATTTCTAAAAGAAAACGAATATAGTATACATGCACGTTTACATGGTGTccgtttattttataaatgcgATTATTGTTCGTATTCAGCTAGACAAAAACCACATTTATTAGCACATAGTAAAGTacatacaaatgaatatcaAGATCGTACTAAAGTATTACAATCCATgcatttacaacaaaatctaCCACCACAAACTTATCcaattaatggtaataatggtgATTTAATATGGGTTGTGTccgataataaatcgaatgatTTAGAAATGGATAttgaattgatgaaaaataataaaccaattaaaACAAGTATCAATGTGCCTTTATCTGGTACAGAATTGTTCCAACAAAAATCGGAAgctcaacaaaaacaacaacaagctcaattaatgaaacaatcatcatcaccaccaccaccaccaccatcattacCGAAATTTAGTGATCCACAATTTGGTACATTAATGCATGGTAATCCAGAATTTGTTTATCCAACATATTTAAAAAATGGCCGTATGAAAGAGAAACGCTACAAATGCCATAAATGTCCTAGTGCATTTGAGAAGCGCGAACAATATCGTATACATTTGAATTTACATGGATCAGAACAACGTTATAAATGTGAACATTGTGATTATTCGGTTAAATATTATGCTAATTATGTAcaacatttgaaaaaacataaaattaatacacAAGCACAAACaactaccaataataataataataatagtaatcgGGATGGTGATAATGATATGATAGTGGATGAAGTTACCAATGATGTCAATAAGAACgggttaataaataataataataataaattatcgactGGTGATCAACAAGcctataaaatattacaacaacgTTTAGTCAATAATACTAGTCCTATTATAAAGGAATTAACTAATGATGATAagaaattgtttcaatgttCAAATTGTCCATATGTCAATTATCGTAAAGATGCTGTTGATAATCATCAACGACGACACATTTCTATATCaggtattaaaaataattttacatgcGAACATTGCGATTATTCAGTTCCGCAACAACATTTTCTACGCgatcataataaattacattttatacaaaataaaaaccatGTTGATGGTTATATGGTCTGTGATGATAtgaaattaatatcaaataaaaatgatgatgatgatgatgatgataataataataataataatagtgataatcttaataataataaacatcatcaacataataatagtagtgaTAGTGATATTATATTTGAAGAGCATGATGATGAATATCTACCACCtttgaataatgaaattgcggaacgtttcaataataagaacaatgatgatgatggtgaaaaacaatttgttaatGTAGAAACGGGCGATGTTGGtgataaattcgataaaactaataaattaatggtcgttgatggtgataataataataaagtcgaTGAAAGTTAG
- Protein Sequence
- SKCLTEHATHEKICGKELNNVQILHPTFLKSTRCPYCRQRCKTNAILDNHLQTCPEAIKATIKTEDIESDNELKIDESQSDDNDSIINNNNSNKPHPMENRVFVWNNITVPMDIEVDDSKYEYQDDKIDDNISLDLSIRTQSPGGSDNSYTICQDYINNTIQQQQQQQSPITITATTTTTTTTTTTTSDKIPTHGNDISIAQHKRVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSLCAYRSNWRWDITKHIKLKSVRDPAHESAKVLMTDETGRRNYTKYNKYLTEIHVSGDQSMETSGGSGTRHKQQQQQQQHDSNNYRNSSSTSPSSSSSSSSPNNQNNKNDLPKLTRAPADLNLSLSSSPSSLLLRNNSGNLRPPPPLKAADGIYFDKKRNGTENKRTLFKCKKCNFRDASREILLAHVKGHYPQQQNILNSSIPSTINNNNQDVNLRSVSPEKDEASVSTLAKGSQAPFRCGHCNQVSNWKHVIQRHCRLKHSGDIRVVSNKNGQEKLEIEEQTDEPDHMDVAQDGAYKCNTCPYSSDNQNDLTEHLNGHLPSSDSIMKCHYCNYFVTRKDELLDHFKLHGIDDPDDFFNKIMDRNNSDGDIGKRFRCLICPYVTNSKSQYTYHKQFHKPRGGQYTCTQCSYNVSKRHLLHQHLKVHGINVAPLKQNGEIIDLDEINDEIEEITTTTTTTTNHNNNQFDMQTFSDIPLVWVSKNGKFSKMFKCRYCPHVNLRKVNIQEHEKMHSVREKNPNSSRSNDTEHHCTECNYVCNNAGVLSSHSKVHQGLYGTVHCLVDPIKSDEEQIRELSKYLNPTMSQMVETINLDDYDNAESSVIMLNDNNIDDTSSIDDNNNYLYFCKECPARFLKENEYSIHARLHGVRLFYKCDYCSYSARQKPHLLAHSKVHTNEYQDRTKVLQSMHLQQNLPPQTYPINGNNGDLIWVVSDNKSNDLEMDIELMKNNKPIKTSINVPLSGTELFQQKSEAQQKQQQAQLMKQSSSPPPPPPSLPKFSDPQFGTLMHGNPEFVYPTYLKNGRMKEKRYKCHKCPSAFEKREQYRIHLNLHGSEQRYKCEHCDYSVKYYANYVQHLKKHKINTQAQTTTNNNNNNSNRDGDNDMIVDEVTNDVNKNGLINNNNNKLSTGDQQAYKILQQRLVNNTSPIIKELTNDDKKLFQCSNCPYVNYRKDAVDNHQRRHISISGIKNNFTCEHCDYSVPQQHFLRDHNKLHFIQNKNHVDGYMVCDDMKLISNKNDDDDDDDNNNNNNSDNLNNNKHHQHNNSSDSDIIFEEHDDEYLPPLNNEIAERFNNKNNDDDGEKQFVNVETGDVGDKFDKTNKLMVVDGDNNNKVDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -