Zimm002710.2
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- Prdm15
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010000452.1:24745-27294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2e-05 0.0011 19.0 1.4 2 23 235 257 234 257 0.96 2 11 0.0018 0.1 12.8 2.6 1 23 353 375 353 375 0.98 3 11 0.0098 0.56 10.5 4.1 1 21 379 399 379 400 0.92 4 11 0.00046 0.027 14.7 2.6 1 23 405 430 405 430 0.97 5 11 0.37 22 5.5 4.0 1 19 434 452 434 454 0.95 6 11 5.3e-07 3.1e-05 23.9 1.8 1 23 465 487 465 487 0.98 7 11 0.0012 0.068 13.4 0.2 3 23 511 531 509 531 0.97 8 11 0.075 4.3 7.7 6.6 1 23 536 558 536 558 0.98 9 11 1.4e-05 0.00078 19.5 2.2 1 23 564 586 564 586 0.98 10 11 8.1e-05 0.0046 17.0 4.8 2 23 592 614 591 614 0.96 11 11 8.8e-05 0.0051 16.9 1.6 1 23 635 658 635 658 0.98
Sequence Information
- Coding Sequence
- ATGGATATGGATCAACATTGTAATATTTGTGGTGAAACtcacaatataaataattgtacattaattaaaattaccaattatgtACAAGATAATGAAATTCCATCACGTGCCAAATTGAGTTTACcgaattttctacaattacaaattttaacagACGGTTCATATACGATAATAACGAAAGAATTGATTAGAAAAGGCACAAAATTTGGTCCGGTTATAGCTAGGAAAATAAATGAACCTAATTCATCATTacaattccaattgaaaattttttcgCAACAagacgtttattattatttagatacaacaaatgaaaatgaatGTAATTGGTTGATATTTGTTAGTGTTGCTGAATTTTTAGAGGAACAAAATCTAATTTGTTACCAAGAAGATTCTGATATTTACTATATTAGTATTAAAGATATTGAACCAAATCAAAGACTGAAAGTATGGTATTCACCACATTATGGAAAACAAATGGATAAGAATATGTTAATATCGTCTGTTAAGTTGAAAGATATAGATTTTGATAGACAATCAacgatattattgaaaaatatcgatttgaataatttagttAGAAAACAACAGAAAGTTGTTGAAAAGAAACAATGgttatgtaaattttgtaataaaatcgataatgatATTGTAACATTTTCGAAACATTTAATTGTACATTATCGTCTACAATTAAAGAAAATGTGTGAAATTTGTAAACAGACATTCAATTCGAAAAAGaatttatcgaatcatttgaaaattgtacactatactgataataatgataaattaataaatacatcaTCAGCCAAATTGAAAACGAAAGATGTATCAGTTGGTGGTCCATTATTGAACGACATGTTCACAGATAGTACAGatttacaacaattcaatatcaatacaacaataaataataatcagaatttattagatgatgatatagaaaatttattattgaatgatgaaGAAGAGAATTTccaacatttcaattttagtTTAATTGACGATAAACaagagaaacaacaaaaaacaatcaacgACAAACAAAATGAATATGAATGTGATGTATGTttgaagaaatttaaaaaattacgtttattattgatacatTTAAAACATCATACTGGTGAATATTTATGTGTGAAATGTTTGAAGATTTTTTGTCGTAAAGAAAATCTAAATACACATTTGTGTAATTGccaaaaattctatcaatgtGATCTGTGTAATAACAATCGGAAATTTAcacaaaagaaatatttaaaacgacatatattaattaaacataaattacgttatttttgtaatttatgtaaaactaattattattcgaaatatgaattattacaacataattgttgtaatatatcgaatttatttaaagagaAATTCGTATGTACAATTTGTGATAAAATCTTTTATAGACaaatctatttgaaaaaacacCTAAAAACACATTTaccgaaaattaataaacaacaacacgataaaataacaacaacaacaacaacaaataattgtacGATATGTGAAATTTGCGGTGTTatgttggaaaataaaaattcgttaTATTTACATATGAAAAAACATAAAGAACCTAAATATGCTTGTCAAATATGTTGCAAGAAATTCCATCGATTCGATTCATTGAAAATGCACGAACGAACCCACAAATCAACAGCAGAGttTGAGTGTAATTTATGTTTGAAAAAGTTCAAAACACGATCAACATTACAAGAACATATCAATTATCataatggtaaattattgaaatgtaaaTATTGCGAAATACAATTCAAACATCGCAGTAcattaaataaacatataaaaaataaacataataataacaataataataataataattgtggtaataattcgaaaatatcattacaatatttttcatGTCCAATATGTGAGaaacatataaaattgaaaagttcaTTATTGAGACATTTACGGAAGATACATCCAAACGATTATAAAAATGTCAATTTAATCAACATAAAACctaaagttttattatcagATAATCGAAATATCATtaagaataatgataaagtATCGGTGAAAGATTCACCACCAAAAAAACAGGAAgaaatcattataaaaaatgaaaatgatgattGTACTGATGTTGGTAATAATGGTAAAGAAGTTTGTTTATCAATTCCCGATTTGAATGAGGTTGATCAAGAAATTACGTTagataagaATGCATACATTCTAGATAATGGTACGATTATTCAACCACAAGAAGATTCAGATAAAgtgataatttatgttttaaatCAGTCATTCTCTTAA
- Protein Sequence
- MDMDQHCNICGETHNINNCTLIKITNYVQDNEIPSRAKLSLPNFLQLQILTDGSYTIITKELIRKGTKFGPVIARKINEPNSSLQFQLKIFSQQDVYYYLDTTNENECNWLIFVSVAEFLEEQNLICYQEDSDIYYISIKDIEPNQRLKVWYSPHYGKQMDKNMLISSVKLKDIDFDRQSTILLKNIDLNNLVRKQQKVVEKKQWLCKFCNKIDNDIVTFSKHLIVHYRLQLKKMCEICKQTFNSKKNLSNHLKIVHYTDNNDKLINTSSAKLKTKDVSVGGPLLNDMFTDSTDLQQFNINTTINNNQNLLDDDIENLLLNDEEENFQHFNFSLIDDKQEKQQKTINDKQNEYECDVCLKKFKKLRLLLIHLKHHTGEYLCVKCLKIFCRKENLNTHLCNCQKFYQCDLCNNNRKFTQKKYLKRHILIKHKLRYFCNLCKTNYYSKYELLQHNCCNISNLFKEKFVCTICDKIFYRQIYLKKHLKTHLPKINKQQHDKITTTTTTNNCTICEICGVMLENKNSLYLHMKKHKEPKYACQICCKKFHRFDSLKMHERTHKSTAEFECNLCLKKFKTRSTLQEHINYHNGKLLKCKYCEIQFKHRSTLNKHIKNKHNNNNNNNNNCGNNSKISLQYFSCPICEKHIKLKSSLLRHLRKIHPNDYKNVNLINIKPKVLLSDNRNIIKNNDKVSVKDSPPKKQEEIIIKNENDDCTDVGNNGKEVCLSIPDLNEVDQEITLDKNAYILDNGTIIQPQEDSDKVIIYVLNQSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366561;
- 90% Identity
- -
- 80% Identity
- -