Zimm006896.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zonitis immaculata
Gene Symbol
-
Assembly
GCA_037414775.1
Location
JAZBGX010001877.1:11355-14395[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00075 0.043 14.0 0.5 2 23 154 175 153 175 0.96
2 15 6.4e-06 0.00037 20.5 2.9 1 23 180 202 180 202 0.98
3 15 4e-05 0.0023 18.0 4.8 1 23 208 230 208 230 0.97
4 15 0.0002 0.012 15.8 0.7 1 20 236 255 236 257 0.94
5 15 0.00027 0.016 15.4 0.2 1 23 264 286 264 286 0.97
6 15 1.7e-05 0.00098 19.2 3.4 1 23 432 454 432 454 0.99
7 15 2.2e-07 1.2e-05 25.1 1.4 1 23 460 482 460 482 0.99
8 15 1.9e-06 0.00011 22.2 3.2 1 23 487 510 487 510 0.95
9 15 0.0035 0.2 11.9 0.1 2 23 522 543 521 543 0.93
10 15 0.0046 0.26 11.5 9.4 1 23 549 571 549 571 0.98
11 15 1.4e-06 8.3e-05 22.5 0.5 1 23 578 600 578 600 0.96
12 15 1.8e-06 0.00011 22.2 1.2 1 23 606 628 606 628 0.98
13 15 4.9e-07 2.8e-05 24.0 0.8 3 23 636 656 634 656 0.96
14 15 4e-06 0.00023 21.1 1.1 1 23 662 684 662 684 0.99
15 15 1.3 75 3.8 0.6 1 23 689 712 689 712 0.93

Sequence Information

Coding Sequence
atggaaactataaaaattgatttggaaCATACATGTCGGACAtgcaaacaacaaaatgacgATATGGTATCAGTATTTGAATTAAGTCTGGATGATTATCCCCGTATCGATGAGATGCTAATGGCGTGTACTGAAATACaggttAAAGTGGGTGATGGCATGCCGTCTTCGATGtgtaaaaattgtttagaaaaattaaaaggaGCATTCGAATTCAAGAAGCAATGCCAAGAAATTGAGGAgagtttaaaaaaatatgtacgTCATATCAATATTGAGTCATTTACTGATGATATTTCTGATGATGTCGATATAACCGATATTAAAAAACAGTTGCGAGATGCTGTTAATGCATTGTCTGaTCCCGTTGATCCACTTGGTAAAGAACCAGGCGAAACTGAAGATCTGTCGTctcaatttgattatatacgTTTTATGAATAATACATGCATGTTATTAATATGTCGTGAATGTTTTAAAGTATTTACAACGTTGGAAGGTTTAAAAGGCCATAAACGTTTAcattttggtaatttatttaaatgtaaatattgtgGTAAAGGTTATACAAGACAAACACACGTTGAACGACATGAAGCAACACATAGAATCCATAAGGTGCATGTGtgtaaaatatgtaataaaaCTTTGACGAGAATTGATCATTTGAAACGACATTTAACAACGCATTTAAAAGATAAACCATATTCATGTAAAATATGCAATAGAGGTTTCAATCGTTCGGATCATTTAGATTTACATACAGTTCGTTGTAAAGGTGatcgtttgtttatttgtgaTATTTGTAATAGAGGATTTGCTCGTGAAGATAGTATGGAAGtacataaaaaattacatGAAAATCAACAGCCTGTCTTACCAACATtagaaaatatcgataatatatCTGAAcattatttcgaaattgatCGTGATCCTGAAAGTCAAGATACAACGATGTATTCAGATGGTGATGATTATTTAGAGCCTTTTGTTGAAGTAGAAGAAAATGATTCAAAGAAAAGTAATGAgaatgatgaaaataatgtatttgaagatattaaaattacaataacaaacGATCCAATTGATTTGAATGATGCAACACAATCGgaagaaattattgttgaaaaaaaggATGACTCTGATATGGAAGATTCAGCTAACCAATTAGATGGCGATGATTCAGATTATTCACCACAGAAAACTGCACATACAAAACGTGGCCGTGGTCGTCCAAGGAAATATCCAGCACCATCACAAAAACGTCGACGTGGAAATAAtgatAAAACCTATACATGTGatgtttgtaataaaacatttgtacgtttaaatttatataatcgtCATTTACATACACATGCTGGAACAAAGCCATATCAATGTGAAATATGTAATCGTGAATTTAAACGTAGTGATCATTTAGCACAACATGTACGAATACATGTAAAACAGGAACATGAATGTGATTATTGTGGAAAAACATTTACTAGACTTGATAAACTTCAGaaacataaaataatgaaacacaCTTTCGAAGGGgTGGGTGGTGATAATAAAAGCGAATGTCCTATATGTCAAAAAACGTTTGCAACAGAAAAATATCGAGATGCTCATGTTAATGCTCATTTAGGTGATAAACGTTTCAAATGTAAAACTTGTTATAAATGTTTCTTATCAAAATCACATTTAACTGAACATATGAAATTCcataatgaaaattcaaagaaCTTTTTATGCTCAGAATGTGGTCAGAGATTTATACGTAATGATTATTTAGTTATACATATGAGACGACATCGTGGTGAAAAACCATTCAAATGTAAATACTGCGGCAAAgGTTTTCCACGTACTACTGATTTAACAGTACATGAACGTTACCATACAGGTGAAAAAACGCATTTATGTACGGTTTGTGGTCGTGGTTTTGGACGTGCATATAATTTAACTGTTCATATGCGGACACATACCGGCGAGAAACCCTATCAATGTACTTACTGTGATGCAGCTTTTGCACAATGTAATGATTTAAAAGCACACGTCCGCCGGCATACTGGTGAACGTTTCCAATGTGAATTATGTTCCGATAGTTTTCTAATGGGTTATCTTCTAACGCAACATAAACGAACAGTtcatgGTTTAAATGTTGTTAGTAATATTCGCCGATTGCCTCCAATCACTGAAATTAAACAAGATGTTGATGAAGAACCAccaattacaattgaattacCAAAGCCAGTTATACCTGATATTATTACGTTTCCACAATTACATCAACGTTTAACAAGGGATTAA
Protein Sequence
METIKIDLEHTCRTCKQQNDDMVSVFELSLDDYPRIDEMLMACTEIQVKVGDGMPSSMCKNCLEKLKGAFEFKKQCQEIEESLKKYVRHINIESFTDDISDDVDITDIKKQLRDAVNALSDPVDPLGKEPGETEDLSSQFDYIRFMNNTCMLLICRECFKVFTTLEGLKGHKRLHFGNLFKCKYCGKGYTRQTHVERHEATHRIHKVHVCKICNKTLTRIDHLKRHLTTHLKDKPYSCKICNRGFNRSDHLDLHTVRCKGDRLFICDICNRGFAREDSMEVHKKLHENQQPVLPTLENIDNISEHYFEIDRDPESQDTTMYSDGDDYLEPFVEVEENDSKKSNENDENNVFEDIKITITNDPIDLNDATQSEEIIVEKKDDSDMEDSANQLDGDDSDYSPQKTAHTKRGRGRPRKYPAPSQKRRRGNNDKTYTCDVCNKTFVRLNLYNRHLHTHAGTKPYQCEICNREFKRSDHLAQHVRIHVKQEHECDYCGKTFTRLDKLQKHKIMKHTFEGVGGDNKSECPICQKTFATEKYRDAHVNAHLGDKRFKCKTCYKCFLSKSHLTEHMKFHNENSKNFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTVCGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQCNDLKAHVRRHTGERFQCELCSDSFLMGYLLTQHKRTVHGLNVVSNIRRLPPITEIKQDVDEEPPITIELPKPVIPDIITFPQLHQRLTRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-