Zimm000069.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zonitis immaculata
Gene Symbol
-
Assembly
GCA_037414775.1
Location
JAZBGX010000006.1:86299-90599[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 6.6e-05 0.0038 17.3 2.7 1 23 133 156 133 156 0.96
2 27 3.7e-07 2.1e-05 24.4 1.1 3 23 161 181 160 181 0.97
3 27 6.5e-06 0.00037 20.5 2.5 1 23 187 209 187 209 0.98
4 27 4e-05 0.0023 18.0 3.6 1 23 215 237 215 237 0.98
5 27 6.5e-07 3.8e-05 23.6 2.7 1 23 243 265 243 265 0.98
6 27 3.6e-08 2.1e-06 27.6 1.1 1 23 271 293 271 293 0.99
7 27 8.2e-06 0.00047 20.2 3.8 1 23 299 321 299 321 0.98
8 27 3.2e-06 0.00019 21.4 0.8 1 23 355 378 355 378 0.97
9 27 7.1e-05 0.0041 17.2 3.6 1 23 384 406 384 406 0.98
10 27 9.4e-08 5.4e-06 26.3 2.0 1 23 412 434 412 434 0.98
11 27 8.7e-06 0.0005 20.1 3.2 1 23 440 462 440 462 0.98
12 27 2.5e-05 0.0015 18.6 0.5 1 23 485 507 485 507 0.96
13 27 2e-07 1.2e-05 25.2 0.4 1 23 515 537 515 537 0.98
14 27 5.2e-06 0.0003 20.8 0.4 1 23 543 565 543 565 0.98
15 27 3.3e-05 0.0019 18.3 0.6 1 23 571 593 571 593 0.98
16 27 0.00012 0.0068 16.5 4.1 1 23 599 621 599 621 0.97
17 27 2.6e-05 0.0015 18.6 0.9 1 23 627 649 627 649 0.98
18 27 0.076 4.4 7.7 3.2 1 23 762 785 762 785 0.97
19 27 0.0011 0.063 13.5 0.9 3 23 790 810 789 810 0.97
20 27 3.4e-06 0.0002 21.4 2.0 2 23 817 838 816 838 0.98
21 27 0.00043 0.025 14.8 1.8 1 23 844 866 844 866 0.92
22 27 0.00086 0.05 13.8 4.8 1 23 872 894 872 894 0.97
23 27 0.025 1.4 9.2 0.9 1 23 900 922 900 922 0.91
24 27 1.2e-06 6.9e-05 22.8 3.8 1 23 928 950 928 950 0.99
25 27 0.0027 0.15 12.3 0.2 1 23 984 1007 984 1007 0.97
26 27 1.3e-05 0.00078 19.5 6.2 1 23 1013 1035 1013 1035 0.98
27 27 7.9 4.5e+02 1.3 0.9 1 8 1041 1048 1041 1049 0.91

Sequence Information

Coding Sequence
atgaattttcataGTTTTCGTTCTTTAATTTTACAAGTTGATTCAAGATTCCATCaagaattgtataataataatttaataaatcaattaaaaactGAAGTAGAAGAACCACCATCTGAAGTTGaaGCTGATAGAAATGAAGATTTAAGTAATAGCAGTGGTGATATTGagaatcaaatagaaaaatctacAACAGAACATGACCAACATAATTCTGACATAGataaaaaaaaatcaaacactaataaaatcgataatgatgatgattatagtCGAGATTTATGTGATGATGGAAAAAGAAACGTTGTTAGACCATGTAAAGTTGAAATCGAAGAACGGTTGTATCAAAATGATAAAGATTTAGATTTTGTTAAAGACAGATCGACCAAAAAACTTCACAGTTGTAATGTTTGCGAACAAAATTTTCGCTATAAATCTGAATTAAATACCCATTTAAAATCCGAACATAGCTCAAATGCATGTagtatttgtaataaaacattttcaaCGAAATCATATTTAAAAACACACATGGATATCCATAAAGATGAGAAATTCCATCAATGTAATGTTTGTGGTAAAACATTtacattaattcaaaatttgaaaacacaTCAAAAAATACATACTGGCGAAAAACCACATCAatgtaatatttgtttaaaaactTTCACATCAAGTACAACTTTAAAAGTACATTTTCGTATACATACAGGTGAAAAACCGTATCATTGTAATACTTGTGGTAGAGATTTTTCAGTTcgtgaaaatttaaaaaaacatatgAGAATACACACCGGTGAGAAACCGTATCAATGTGACATTTGTGGTAGAAGTTTTACAGATAGTGTAACTTTAAAATCCCATCGAAGGACTCATACAGGTGAAAAACCATTTCAATGTAATATTTGTGGGAAAAGTTTTACAGTTAAGAATAATCTAAGATGTCATCTAAGATCGCACAGTTATAATGCAAAACTTAATGGTACGATTTCGGAAAAAGGTATTCTAGAAGATGAagatttaattcaacaaactacGTCAGAAACTggtgaaaaattatatatttgtaatatttgtaaaCAAAGTTATACAGATCGAGATGCTTTAAAGCGACATTTACAACGGTTACATAGCGGCGAAAAACCGCATCAGTGTAATGTTTGTTTAAAGACGTTCACGTCAAGTACTACGTTGAAAGTACATTTTCGGATACATACGGGCGAGAAACCGTACCATTGTAGTATATGCGGTAAAGATTTTTCTGTTAGAGAGAATCTAAAGAAACATATGCGAGTACATACAGGTGAGAAGCCGTATCAATGTGATTTTTGCGGTAAAAGTTATACAAATAGTACATCATTAAAATCGCATAAAAGTAAACATAcagaaattgattataattcagATAGGAATGGTATGGAGGCAGCAACACAAATTGAcgataaaacatttttatgtaatatttgtaataaaagttatataaatcaattcgCTTTAGATCAACATATACGATCTCATAGTGatgaaaaaatcgaaacatTTGTTTGTGAAATTTGTAGTAAAGTTTTTAATAGAAGTAGTAATTTATATGCACATTTAAAAATACATACAAGTGAAAAACCATATGAATGTGGAATTTgtgatagaaaatttatatcgaaatcaCGTTTAAATATACATTTAAAAGTACATACAGGTGCCAAACCATTTACTTGTAATTTATGTGATGCAAAATTTTCCGTAAAAGGTTCATTGAAAGCTCATTTTCGTATACATAACGATGAAAAACCATTTAATTGTCATAtatgcaataaaaattttcgtGTTAAATGTGCTTTAACTGTACATTTAAGAGCACACAACGATGAAAAACCATTTATTTGTCATGTTTGTAATAAGGGTTTTCGTGTAAGGGCAGCTTTGAAAATCCATTTGACTACACATAATAATGAAAAGCCGTTTttatatGAGAGTGATCCATTTCCGAAAGTTACATGTACTGATTGTTTCAAcaaattgttagaatttcatGATTTTCGTTCAACGATTTTACAAGTTGATTCACAATTCCGTCAAGAATTGTATAAGAACGGTTTAGAGAAAAATGAACTAgattatgatttattagaaataaAAAAGAATGAATTGGATGACATTTTCGATGGTGATGTTAATAATGAAGCCATAGATTTGGGAATTAATGGAACTTACGGTTATGTTCCGCATTTAGATGAATCATCGAATACAGATGTTGATAATGAAGGAACACCAAAAAAAGTCTATAGTTGCTGTTTTTGTGCAAAATCGTACTTTTATAGAGCAAAATTAAATgtacatttattaaaaatccataaattaCATGGATGTAAACATTGTAACGAAACTTTCCCATCAAAATCGTTATTAATTGGTCATTCAGAGATGCACAAAAATGAAGAAATCAATCAATGTAATGTTTGTAATAAGATtttctcattaaaaaaaaatctaaagacACATCAAAGAGTACATACAGGTGAAAAATCATATCAATGTAAAACttgtttaaaatatttctCGTCAAGTTCTTCATTAAAAGTACATAGTGTATTACATACAGGCGAACGACCTTATCATTGTAATATTTGTGGAAAAACTTTTGCATGTAAACAAAATTTACGAGTACATTCGAGACTACATACCGGTCAAAAATTACATCAATGCAATATTTGTGGTAAACGTTATGGTGGTAGTAcgattttgaaaaatcataaACTAGCACATGCCGGTATAAAACCGTTCAAATGTAATTTGTGTggtaaaaattttacatttaaaaatacattaaGACGACATTTGCAAACACATAGTTTTGCTGCAAaacgcaataataataataattccgaGACATGTTTCAAAGTagaagaattaattgaatattcaacaaatgagaaacaagagaaattatttatttgtagtaTTTGTAAAGAGCCATATAAAGATGTAATGCCTTTAAAACGACATTTACAACGAATACATAGTGGTGAAAAAATGCATCAATGTACAATTTGCCATAAAACGTACACTTCAAGTAGTTCATTAAAAGAACATTATCGACTCCATACAGGTGAGAAGCCATTCCATTGTGATATTTGTGGTAAAGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTGGGAGCTAA
Protein Sequence
MNFHSFRSLILQVDSRFHQELYNNNLINQLKTEVEEPPSEVEADRNEDLSNSSGDIENQIEKSTTEHDQHNSDIDKKKSNTNKIDNDDDYSRDLCDDGKRNVVRPCKVEIEERLYQNDKDLDFVKDRSTKKLHSCNVCEQNFRYKSELNTHLKSEHSSNACSICNKTFSTKSYLKTHMDIHKDEKFHQCNVCGKTFTLIQNLKTHQKIHTGEKPHQCNICLKTFTSSTTLKVHFRIHTGEKPYHCNTCGRDFSVRENLKKHMRIHTGEKPYQCDICGRSFTDSVTLKSHRRTHTGEKPFQCNICGKSFTVKNNLRCHLRSHSYNAKLNGTISEKGILEDEDLIQQTTSETGEKLYICNICKQSYTDRDALKRHLQRLHSGEKPHQCNVCLKTFTSSTTLKVHFRIHTGEKPYHCSICGKDFSVRENLKKHMRVHTGEKPYQCDFCGKSYTNSTSLKSHKSKHTEIDYNSDRNGMEAATQIDDKTFLCNICNKSYINQFALDQHIRSHSDEKIETFVCEICSKVFNRSSNLYAHLKIHTSEKPYECGICDRKFISKSRLNIHLKVHTGAKPFTCNLCDAKFSVKGSLKAHFRIHNDEKPFNCHICNKNFRVKCALTVHLRAHNDEKPFICHVCNKGFRVRAALKIHLTTHNNEKPFLYESDPFPKVTCTDCFNKLLEFHDFRSTILQVDSQFRQELYKNGLEKNELDYDLLEIKKNELDDIFDGDVNNEAIDLGINGTYGYVPHLDESSNTDVDNEGTPKKVYSCCFCAKSYFYRAKLNVHLLKIHKLHGCKHCNETFPSKSLLIGHSEMHKNEEINQCNVCNKIFSLKKNLKTHQRVHTGEKSYQCKTCLKYFSSSSSLKVHSVLHTGERPYHCNICGKTFACKQNLRVHSRLHTGQKLHQCNICGKRYGGSTILKNHKLAHAGIKPFKCNLCGKNFTFKNTLRRHLQTHSFAAKRNNNNNSETCFKVEELIEYSTNEKQEKLFICSICKEPYKDVMPLKRHLQRIHSGEKMHQCTICHKTYTSSSSLKEHYRLHTGEKPFHCDICGKDXXXXXXXXXXXXXIIGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01566397;
90% Identity
iTF_01566397;
80% Identity
iTF_01566397;