Zimm000071.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zonitis immaculata
Gene Symbol
-
Assembly
GCA_037414775.1
Location
JAZBGX010000006.1:97912-102911[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.17 9.7 6.6 0.0 3 23 149 169 147 169 0.94
2 35 4.9e-06 0.00028 20.9 0.6 2 23 206 227 205 227 0.98
3 35 0.0057 0.33 11.2 7.1 1 23 233 255 233 255 0.98
4 35 0.0072 0.41 10.9 0.9 1 23 261 283 261 283 0.89
5 35 8.1e-06 0.00047 20.2 1.5 1 23 289 311 289 311 0.98
6 35 2e-06 0.00011 22.1 0.5 1 23 328 351 328 351 0.97
7 35 0.12 7 7.0 5.4 2 23 358 379 357 379 0.91
8 35 0.00017 0.0099 16.0 0.2 2 23 386 407 385 407 0.96
9 35 0.00012 0.0067 16.6 1.0 1 23 413 435 413 435 0.98
10 35 0.0061 0.35 11.1 2.4 1 23 441 463 441 463 0.99
11 35 0.00016 0.0094 16.1 2.2 1 23 469 492 469 492 0.94
12 35 0.00046 0.027 14.7 2.2 1 23 497 519 497 519 0.99
13 35 0.26 15 6.0 1.8 1 23 536 559 536 559 0.87
14 35 0.093 5.4 7.4 3.0 6 23 570 587 565 587 0.94
15 35 0.00026 0.015 15.4 0.4 2 23 594 615 593 615 0.95
16 35 0.00012 0.0069 16.5 0.6 1 23 621 643 621 643 0.98
17 35 7.7e-05 0.0045 17.1 1.3 1 23 649 671 649 671 0.98
18 35 0.0016 0.09 13.0 2.5 1 23 677 700 677 700 0.94
19 35 0.18 10 6.5 5.0 1 23 705 727 705 727 0.97
20 35 0.00017 0.01 16.0 3.9 1 23 749 771 749 771 0.98
21 35 0.00041 0.024 14.8 2.5 1 21 777 797 777 798 0.95
22 35 5.9e-07 3.4e-05 23.8 1.2 1 23 890 912 890 912 0.98
23 35 2.9e-05 0.0017 18.5 1.2 2 23 917 938 917 938 0.96
24 35 5.9e-07 3.4e-05 23.8 2.0 1 23 944 966 944 966 0.98
25 35 0.00023 0.013 15.6 3.4 1 23 972 994 972 994 0.98
26 35 1e-06 5.8e-05 23.0 2.6 1 23 1000 1022 1000 1022 0.98
27 35 4.5e-08 2.6e-06 27.3 0.9 1 23 1028 1050 1028 1050 0.99
28 35 1.2e-07 7e-06 25.9 2.5 1 23 1056 1078 1056 1078 0.99
29 35 4.3e-06 0.00025 21.1 0.7 1 23 1107 1129 1107 1129 0.97
30 35 1.6e-05 0.00093 19.2 1.0 1 23 1134 1156 1134 1156 0.98
31 35 3.8e-06 0.00022 21.2 1.0 1 23 1162 1184 1162 1184 0.99
32 35 1.9e-05 0.0011 19.0 0.7 1 23 1190 1212 1190 1212 0.98
33 35 1.9e-05 0.0011 19.0 3.7 1 23 1218 1240 1218 1240 0.97
34 35 1.9e-05 0.0011 19.1 0.4 1 23 1246 1268 1246 1268 0.98
35 35 6.1e-05 0.0035 17.4 4.2 1 23 1274 1296 1274 1296 0.98

Sequence Information

Coding Sequence
ATGGATTTGTGTCGGTTGTGTTATTTAGAAACGCCTCtgaatttatgtaaaaatttatatatcaaaCAAGATCATAATCCACAACTACTTGAAGTTATTGAACTCTTAACGGGATTACAATTGTATGAAGGTGATCCATTCCCAAAAGTTACATGTACCGATTGTTATgagaaattgttaaatttttataattttcgtttattaattCTACAAGTTGATTCGAAATTTCGTCAAGAATTGTACAACAATGATTTGGATAAACTGATGAAAATTGAAGTggatgatttaattgaaattgcaAATAAAGAATcggataatgataatatttcgattgatgaaaatgatgatCGTCAAGATTTGTCTATCAATGAATCTAGAGATAAGAATGTTGATGAAGTTCGACCAATATGCAAAGATGAATTACCTGATCATCAATTATATGGATGTGATCGTTGTATTGAAACTTTTCCAACGGAATCAGCCTTAATCAATCATTTAGAAGAACATAAAAATCTCGAACttgatcaaaataaaattcgtaataaatatttttctataaaatccAATTCGAAGATATACCGTTCAAAAATGAATAccacaaatataaaattaaacaagtGTGGAATCTGTCCAAAAACATTTACATCAATTTATACATTAAAAGAACATCAACGTGTCCATACTGGTGAACAACCATTTCATTGTAATACGTgtgataaaaaatttacatttatacaAAGTTATCggaaacatttgaaaaaacatACCGATCAAAAACCGTATCGTTgtgatatttgtaataaaagttTTGCATATGctataatatttagaaaacataGATTTGCACATACTGGTGAGAAACCATTTAAATGTAATATTTGTTCGAAAAATTTCACATTCGAACCTAATTTGCAACGACATTTacaattacataatattgaaaaaactaattgtaaacTTGAAGAAAATGACGAACAACTATTTATATGTAATATTTGTAATGAATCGTTTAAAGATCAAAATGATCTAAAATGGCATTTACAACGGATGCATAATGATGAAAAAACACATCATTGTATTGTTTGTTCGAAAACTTACGCCtttaaaaaaacattaaaaagaCATTTATTATCTCATACGAATCATAAAACGTTACGTTGCAATATATGTAATGAAGATTTCGTCAATATTGATTCATTAAAGAAACATTTAGATGTACATATAGATACAAAACTATTCAAATGTGATAGTTGTAATCAAACTTTTACATcggaaataaattggaaaatacatCAAAAAGTACATATGGATGGGACGAATTATCAATGTAAAACTTGTTTGAAATTGTTCCTTACAAATTATTCGTTAAAATTACATCAGAGAGTACATACAGGTGAAAAACCATATAATTGTGATGTTTGTGgtaaatattttccatataagCAAAGTTTACGAAGacatttccaacaatatcATGGTCAAGAACCATATAAATGTAATATTTGTTATGAACTTTTTacattcgaaattaatttcaaacgaCATTTACAAAcacataataatgaaaaaattcgtTGTAAAATTGAAGAGAACGAAGTGAAATCATTCATTTGcgatatttgtaataaatcgtATAAATGTGAAGATGatttaaaattccatttaGAACGGATACATAATGCTGAAAAAACACATAATTGTATTGCTTGTTCGAAAACTTACGCCttcaaaaaaacattaaaacgACATTTATTGTCTCATACAAATCAAAATACTTTGCATTGCAATATTTGTGATGAAGATTTCGTTAATGTTGACTCATTGAAAAAACATTTAGATGTACATATTGGTGAACAACTATTCAAATGTGATAGTTGTAATGAAACTTTTACATCGAAACCAAATTGGGAGTTACATCAAAAAGCACATATAAGCGgtaaaaattatcaatgtaaaatttgtttgaaattatttataacaagttatttattgaaattacatcAGAGAGAACATACAGGTGCAAAACCGTATTGTTGCGATGTTTGTGGTAGAGATTTTCCATATAAACGAAGTTTAAGGATACATTTTGAACGGTATCATAGTCAAGAACCATATAAatgtaatatttgttgtaaaaGTTTCCTAAATAGTAGAAATTTGGAAGAACACAAATATAAACatacaaataatgaaatacctaaatcgaatattttgataacaaatataaatgcAATTATTAAACCACATAGATGTAGTATATGTAAAAAATTGTTCACTTCACTTTATACATTAAAAGAACACCAGAAAGTACATACCGGTGAGAAACCATATCATTGTAATAGTTGTGGTAAGGATTTTTCATATAGACAAAGTTTACGGAAGCATTTGaTGTTTGAAAATGATCCATTTCCAAAAACTGCATGTAATGATTGTTGtgagaaattgataaatttccataatttccgATCGTTGATTATACAAGTCGATTCGAAATTCCATCAAGAATTTTACAATCGTAATgtgataaatcaattgaaaacgGAAATAGAAGAACCTGTACAACATCCACCTGattcatataaattagaaGTTGACGATCAATTATTGTCTCAATCAGATGGTAATCGGACAATTTTAGATCTTGATAAAGCAACTGGTGTTGAGAATTATAATTGTCATGTTTGtggtaaaatttttgttgatcaatTCGAATTGAATCGACATTTAAAAATCCATTATGGATCAAATACATGTAGTATTTGTAACAAAACATTTTCAGCTAAATCATATTTAAAAACCCATTTAGAATTGCATAAAGATGAAAAACCACATCAATGTAGTATTTGTGGTAAAACTTTtgcattaaataaaaatttaaagacaCATTTACGTGTCCATACTGGTGAGAAACCGCATCAATGTagtatttgtttgaaaaatttcacatCAAGTACTACATTAAAAGTACATTTTCGTATACATACCGGTGAGAAACCGTACCATTGTACAACATGTGGTAAAGATTTTTCAGTTcgtgaaaatttaaaaacacaTATGAGAATACATACAGGTGAGAAGCCATATCAATGTGATATTTGTGGTAGGAGTTTTGCAAATAGTGAAACATTAAAATCACATCGTAGAACACATACTGGTGAAAGACCATATCAATGTAATATTTGTGgtagaaattttacatttaaaaataatttacgatCACATTTACGTACACATAGTTGCgatacaaaattcaattatgatTCAATTACAACcaaatcgaattatttcgatacaacaacacaaaatggtgatacattatttatttgtaatatttgtaatgAAAGTTATACGGATCAATTCGGTTTGAAACGGCATTTACGTTTACATAGTGGTGAACGGTTTGTTTGTGAAATTTGTAGTAAAAGTTTTAAATTACGTGGTAGTTTACGGACACATTTAAAATTACATAGTGGCGAGAAACCTTATCAGTGTAATGTTTGTAATCGACGATTTCCATCTAAATCACGTTTAAATATACATTTGAAAGTACATACAGGTGAAAAACCATTCAATTGTGATATTTGTAAAGCTAGTTTTTCAGCAAAATCCACATTAAAATCACATTTAAGGAtacataataatgaaaaaccgTTTAATTGtcatatatgtaataaaaGTTTTAGAGTGAAATGTGCTTTAACAGTTCATATAAGAGCGCATAGTGATGAGAAACCGTTTAGTTGTCAGATTTGTAATAAAGGCTTTAGAGTAAGGGctgttttaaatattcatatgAAAACGCATAGTGGCGAGAAACCGTTTATTTGccaaatttgtaataaatcgtTCTCATTGAAATGGTGTCTGAATAAACATCTAAAGAAACACGGAGAGAACAACCGAAAcgatttagaagaaaatagtcactaa
Protein Sequence
MDLCRLCYLETPLNLCKNLYIKQDHNPQLLEVIELLTGLQLYEGDPFPKVTCTDCYEKLLNFYNFRLLILQVDSKFRQELYNNDLDKLMKIEVDDLIEIANKESDNDNISIDENDDRQDLSINESRDKNVDEVRPICKDELPDHQLYGCDRCIETFPTESALINHLEEHKNLELDQNKIRNKYFSIKSNSKIYRSKMNTTNIKLNKCGICPKTFTSIYTLKEHQRVHTGEQPFHCNTCDKKFTFIQSYRKHLKKHTDQKPYRCDICNKSFAYAIIFRKHRFAHTGEKPFKCNICSKNFTFEPNLQRHLQLHNIEKTNCKLEENDEQLFICNICNESFKDQNDLKWHLQRMHNDEKTHHCIVCSKTYAFKKTLKRHLLSHTNHKTLRCNICNEDFVNIDSLKKHLDVHIDTKLFKCDSCNQTFTSEINWKIHQKVHMDGTNYQCKTCLKLFLTNYSLKLHQRVHTGEKPYNCDVCGKYFPYKQSLRRHFQQYHGQEPYKCNICYELFTFEINFKRHLQTHNNEKIRCKIEENEVKSFICDICNKSYKCEDDLKFHLERIHNAEKTHNCIACSKTYAFKKTLKRHLLSHTNQNTLHCNICDEDFVNVDSLKKHLDVHIGEQLFKCDSCNETFTSKPNWELHQKAHISGKNYQCKICLKLFITSYLLKLHQREHTGAKPYCCDVCGRDFPYKRSLRIHFERYHSQEPYKCNICCKSFLNSRNLEEHKYKHTNNEIPKSNILITNINAIIKPHRCSICKKLFTSLYTLKEHQKVHTGEKPYHCNSCGKDFSYRQSLRKHLMFENDPFPKTACNDCCEKLINFHNFRSLIIQVDSKFHQEFYNRNVINQLKTEIEEPVQHPPDSYKLEVDDQLLSQSDGNRTILDLDKATGVENYNCHVCGKIFVDQFELNRHLKIHYGSNTCSICNKTFSAKSYLKTHLELHKDEKPHQCSICGKTFALNKNLKTHLRVHTGEKPHQCSICLKNFTSSTTLKVHFRIHTGEKPYHCTTCGKDFSVRENLKTHMRIHTGEKPYQCDICGRSFANSETLKSHRRTHTGERPYQCNICGRNFTFKNNLRSHLRTHSCDTKFNYDSITTKSNYFDTTTQNGDTLFICNICNESYTDQFGLKRHLRLHSGERFVCEICSKSFKLRGSLRTHLKLHSGEKPYQCNVCNRRFPSKSRLNIHLKVHTGEKPFNCDICKASFSAKSTLKSHLRIHNNEKPFNCHICNKSFRVKCALTVHIRAHSDEKPFSCQICNKGFRVRAVLNIHMKTHSGEKPFICQICNKSFSLKWCLNKHLKKHGENNRNDLEENSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-