Zimm008796.1
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- PLAGL1
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010003142.1:1-6708[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.66 38 4.7 0.3 2 23 20 42 20 42 0.89 2 37 2.7e-06 0.00015 21.7 2.6 3 23 48 68 47 68 0.98 3 37 0.0002 0.012 15.8 4.0 1 23 78 101 78 101 0.98 4 37 0.00046 0.027 14.7 0.2 1 23 108 130 108 130 0.98 5 37 6.9e-08 4e-06 26.7 0.2 1 23 136 158 136 158 0.99 6 37 1.3e-06 7.2e-05 22.7 2.0 1 23 164 186 164 186 0.98 7 37 0.063 3.6 7.9 5.7 2 23 206 228 206 228 0.93 8 37 5.3e-06 0.0003 20.8 1.4 3 23 234 254 233 254 0.98 9 37 7e-05 0.004 17.2 4.0 1 23 264 287 264 287 0.98 10 37 5.1e-05 0.0029 17.7 0.2 1 23 294 316 294 316 0.98 11 37 4.2e-06 0.00024 21.1 0.6 1 23 322 344 322 344 0.98 12 37 0.00019 0.011 15.8 2.7 2 23 360 381 359 381 0.97 13 37 0.011 0.66 10.3 5.7 1 20 387 406 387 408 0.92 14 37 0.00032 0.019 15.1 3.9 1 23 418 440 418 440 0.98 15 37 0.002 0.11 12.7 2.1 2 23 447 469 446 469 0.94 16 37 0.00021 0.012 15.8 0.4 3 23 479 499 478 499 0.99 17 37 2.9e-05 0.0017 18.4 3.4 2 23 510 532 509 532 0.97 18 37 0.00028 0.016 15.4 0.2 1 23 539 561 539 561 0.98 19 37 1.5e-06 8.9e-05 22.5 1.5 2 23 568 589 568 589 0.98 20 37 0.0021 0.12 12.6 3.6 2 23 603 624 602 624 0.98 21 37 0.0094 0.54 10.6 5.7 1 20 630 649 630 651 0.94 22 37 0.00039 0.022 14.9 4.0 2 23 659 680 658 680 0.97 23 37 0.0067 0.38 11.0 2.1 3 23 688 709 687 709 0.93 24 37 0.00049 0.028 14.6 4.7 3 23 718 737 717 737 0.99 25 37 0.00064 0.037 14.2 5.2 1 23 747 770 747 770 0.98 26 37 0.00045 0.026 14.7 0.1 1 23 777 799 777 799 0.98 27 37 1.1e-05 0.00063 19.8 0.8 2 23 806 827 806 827 0.98 28 37 5.8e-06 0.00034 20.6 0.9 1 23 833 855 833 855 0.98 29 37 0.00097 0.056 13.6 1.9 2 23 873 894 872 894 0.96 30 37 0.00027 0.016 15.4 3.8 1 20 900 919 900 921 0.94 31 37 1.4e-05 0.0008 19.5 1.7 1 23 929 951 929 951 0.98 32 37 0.01 0.6 10.4 0.1 2 23 958 980 957 980 0.90 33 37 0.00033 0.019 15.1 5.9 3 23 989 1008 988 1008 0.98 34 37 0.0015 0.085 13.1 5.3 1 23 1018 1041 1018 1041 0.98 35 37 0.00039 0.022 14.9 0.5 1 23 1048 1070 1048 1070 0.97 36 37 4.9e-07 2.8e-05 24.0 3.4 2 23 1077 1098 1077 1098 0.98 37 37 5.7e-05 0.0033 17.5 0.9 1 23 1104 1126 1104 1126 0.97
Sequence Information
- Coding Sequence
- ATGACGAAATATGCATTTAAAAAACACTTATTACGTCATAGTGAGCAATATATAGCTACTTGTGAAATTTGTAGTAAAGGCTTTCTAACGATTGGAGCTTATGAACgacataaaattaataaacacgAAAATGGTAATCTGTGCGATATTTGCGGTAAATCATTCTGTGATCCATCGTCATTGAGATCGCATAAGAAACGGCACGATGAGAATTACACGAaaacattgaattttcaatgtGATCTGTGCGAAAGGAAATTCATGCAGAGTATACATTTGAATCGACATAAACGACGGAtgcataatgataataaaacgaaatatatTTGCGATCTGTGCGGACGTGAATTGGCAAGTCAGTACGGTTTGACAATGCACAAAAAAACCCATGATGGTATTCGGAAATACGAATGTGAAATTTGCGGGAAAAGTTTCATCAAGTcagattatttgaaagaacaCATACGAATACATTCCGGTGAGAAACCGTACAGTTGTCATGTGTGTGGTAGATCGTTTACACAAAAAACACCATTGAAAGTACATTTACGTTTGCATACCGGCGAAAAACCGTACAATTTACATTTATTACGTCATGCCGGACATTATCAAGCTACTTGTGAGATTTGCGGTAAAAAATTCGTAACTATTAGCCATTGTGAAAGACACAAGAAATTCAAACATGAGAAATTCAATCTTTGTGATGTTTGTGGTAGATCGTTTTGTGATCcatcatcattgaaattacATCAAAAACTACACGATGCAAATTATACGACAACATTGGATTTCCAATGTGATATTTGTCAAAAGAAATTTatgcaaaaattatatttgaaacgaCATAAACGACGGATGCATAATGACAATAGGCCGAAATTTATTTGTGATTTGTGTGGACGTGAATTGGCAAGTCAAAATACTCTAAAGGATCATATACGGACGCATTCTGGTGAGAAACCGTATAGTTGTCAAATTTGTGGCCAATCATTTACACAAAGCACTCCATTGAAATTACATTTGAGACTTCATACGGGCGAGAAACCgATTGCAACAAGAAATCGAAGAACATCAACTGAATGTCCGTATTGTTCGAAAATGTGTAAAGAAAAACGCCAACTCAACAAACATCTTCTCGTACATACTGAACACCGTCCATATTTGTGTCATAAATGCAATAAAACATTCCAACGTAAAGAATATCTAGATAAACATAAATGTCTTCCaacaattgacaataataatgtgaAATACGAATGTGATATTTGTCATAAAACATTGAGTAACGATAAGAATTTGAAAGTGCACCATTTGCGCCATTTGAAACTATTTAAAGTGACATGCGAAATGTGCGGTCACGGTTGTATGTCGAATAGTGAATTACGCCGGCatataatttacaaacatAGTACCGATGGTATACGATCGAGTTTATGTAATATTTGTGGTAAATTGTTTTATGATAAAGAAACATTAGATTATCATGTTAGGACGCATGATGAAAATTATACGAAAGAGCGTAATatcaaatgtaaattttgtacGAAAAGTTTCACACAAACACGACTTTTGAAACAACATATACGTAGAATGCATAATGCTAATAGACGGAAATATATTTGTACCATCTGTAATAAAGAACTAGCTAGTACATACAGTTTGCAACTACATGTACGTGTCCATCAAGGTGTTAAACCGAATGAATGTAATTTTTGTGGTAAGAAGTTCACAAGAAGCCGTACATTAGTTGAACATATTCGTACACATTCTGGTGAGAAACCGAATAAGAGATCGAGAAGCTGCAATCGTTGTccaaattgtttgaaaatctGTAAAGATCGTCGGACATTGAAGAAACATCTAATCACCCATAGTAATGTACGTCCATATTCTTGTGATATTTGCAAGAAAGCATTCAAACATTTACGTTCATTATATCACCATAAATGTTTAGGTGATGATAATGTGAAAGTGGAATGTGAAATTTGTGGTAAACATTTGAGTAATGCTCACAATTTGAAAATGCACCATTTACGacatttgaaacaattcaaaGCAAATTGCGATATATGCGGACATGGTTGTATGTCACAAAGCGAATTACGTCAACATATCGACAATACACATAATAACGATTTTAAGCATAGTTTATGTAACATTTGCGGTCATACATTCAATAGTGGCCATTTGAAGAGTCACATGCAACGACACGACGAGAATTATATGAAGAAACGCGATTATAAATGCGAATTTTGTAACAAGACATTTCTACAAAAACTCCATTTGAAGAAACATATCAATCGTATGCATAATGATAAACGACAACGATACGTTTGCGATATATGCAATAAAGAATTGGCGAGTACTTATGGTTTGAATGTACATAAACGGATACATTACGGCATTAAACCGAATGAATGTAATTATTGCGGTAAGAAATTTACAGTTCGGAGTATTTTGATGGAACATATGCGAACACATTCCGGTGATAAGCCGTATATTTGCCAAATCTGTAATCGTGGTTTCTCGCAACGAACACCATTACGGAATCATATGAGACAGCATACTGGTCAGAAGCCGAAGAAGTTGAAGCGCAAGAAACTTGGGAAGCCGGTGCAATGTCCGCATTGTCCGAAAATCTGCAAAGAACGTCGTGGCTTACGTAAACATCTAATAGCACATTCCGAACAACGTCCGTATTCATGCAATTTATGCGAGAAATCTTTCAAAGAACGCAGCTCATTGAACCGTCATAAATGTTACAATACAGATAATTGTCGTAAATTCGAATGTGAAATTTGCGGTAAAATCTTGAGTCGTCATAGTAGCCTCAAGATGCACCGTATGCGacataaaaaacaatataaagtaATGTGCGAAATTTGCGGACGTGGCTGTATGTCGTTTAGTGAATTGAATGCACATGTAGCTGGTGCACATCGTAACGACACAAAATATAGTTTGTGTAATATTTGTGGACAGTCGTTTAATACGTCGCATTTGAAACACCATATGAAACGACATGAAGAAGGCTATAATGAAAATCGcaatttcaaatgtgaattttgtGCAAAGACTTTCTTACAAAAAACCCATCTAAGGAAACATATTAAACGGATGCACAACGATAATCGACCGAAACATGTTTGTACGATTTGTAATAAAGTTTTAGCCAGTACTTATGGTTTGAATGTACATAAACGGATACATGACGGTATTAAATCGAACGAATGCACTTATTGTGGTAAGAGATTCACAAGGAAATGTAATTTAGTGGAACATATTAGGACGCATACTGGCGAGAAACCGTATGTTTGTACAGTCTGTGGACGTGGCTTCTCACAACGGACACCATTAAGGAATCATTTCAAACAGCACTCCGGACAAATACTACATTCTT
- Protein Sequence
- MTKYAFKKHLLRHSEQYIATCEICSKGFLTIGAYERHKINKHENGNLCDICGKSFCDPSSLRSHKKRHDENYTKTLNFQCDLCERKFMQSIHLNRHKRRMHNDNKTKYICDLCGRELASQYGLTMHKKTHDGIRKYECEICGKSFIKSDYLKEHIRIHSGEKPYSCHVCGRSFTQKTPLKVHLRLHTGEKPYNLHLLRHAGHYQATCEICGKKFVTISHCERHKKFKHEKFNLCDVCGRSFCDPSSLKLHQKLHDANYTTTLDFQCDICQKKFMQKLYLKRHKRRMHNDNRPKFICDLCGRELASQNTLKDHIRTHSGEKPYSCQICGQSFTQSTPLKLHLRLHTGEKPIATRNRRTSTECPYCSKMCKEKRQLNKHLLVHTEHRPYLCHKCNKTFQRKEYLDKHKCLPTIDNNNVKYECDICHKTLSNDKNLKVHHLRHLKLFKVTCEMCGHGCMSNSELRRHIIYKHSTDGIRSSLCNICGKLFYDKETLDYHVRTHDENYTKERNIKCKFCTKSFTQTRLLKQHIRRMHNANRRKYICTICNKELASTYSLQLHVRVHQGVKPNECNFCGKKFTRSRTLVEHIRTHSGEKPNKRSRSCNRCPNCLKICKDRRTLKKHLITHSNVRPYSCDICKKAFKHLRSLYHHKCLGDDNVKVECEICGKHLSNAHNLKMHHLRHLKQFKANCDICGHGCMSQSELRQHIDNTHNNDFKHSLCNICGHTFNSGHLKSHMQRHDENYMKKRDYKCEFCNKTFLQKLHLKKHINRMHNDKRQRYVCDICNKELASTYGLNVHKRIHYGIKPNECNYCGKKFTVRSILMEHMRTHSGDKPYICQICNRGFSQRTPLRNHMRQHTGQKPKKLKRKKLGKPVQCPHCPKICKERRGLRKHLIAHSEQRPYSCNLCEKSFKERSSLNRHKCYNTDNCRKFECEICGKILSRHSSLKMHRMRHKKQYKVMCEICGRGCMSFSELNAHVAGAHRNDTKYSLCNICGQSFNTSHLKHHMKRHEEGYNENRNFKCEFCAKTFLQKTHLRKHIKRMHNDNRPKHVCTICNKVLASTYGLNVHKRIHDGIKSNECTYCGKRFTRKCNLVEHIRTHTGEKPYVCTVCGRGFSQRTPLRNHFKQHSGQILHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -