Ztra047142.1
Basic Information
- Insect
- Zhengitettix transpicula
- Gene Symbol
- -
- Assembly
- GCA_037074705.1
- Location
- CM073595.1:60131994-60134846[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0057 1.9 10.7 4.6 2 23 105 127 105 127 0.91 2 11 0.015 5.1 9.3 6.3 2 23 187 209 186 209 0.94 3 11 4.2 1.4e+03 1.7 7.4 3 23 318 339 317 339 0.86 4 11 0.0045 1.5 11.0 0.9 2 23 395 417 395 417 0.91 5 11 0.21 69 5.8 2.9 3 23 481 502 479 502 0.91 6 11 0.37 1.2e+02 5.0 5.7 3 23 534 555 532 555 0.90 7 11 0.0044 1.5 11.0 3.6 2 23 602 624 601 624 0.96 8 11 0.0094 3.1 10.0 2.0 3 23 639 660 637 660 0.94 9 11 5.3e-05 0.018 17.1 0.3 3 23 708 729 707 729 0.95 10 11 0.2 67 5.8 0.8 1 23 804 826 804 826 0.98 11 11 6.1e-06 0.002 20.0 0.6 1 23 836 858 836 858 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCGTCTGTAGAGATGCACCTGGACGAGCCGACGCCGAGCAAGCGTGCGCTTCAAGGCGCCGAGACGAGTGCGAAGAAGAGGCGCAAGCAGTCAAATCCACTGCGATTCGGCGGCGCCGAGTCTGGTGACTCCGACGAGCCCGACGCGCCGCTCAACCTGTCGGCCCCTCATCGGCCCTGGAACCCCTACGTCCAGGCCGCGAACGTCGTCCCCACGCTCCTTTTTCCACCCGGGCATTCCAACGCCACCGCCGCCACCGCAACCACCAACACCGCCACTCAAATACGGATCTTCAACCCTGACGCGTACTGCGAGCTCTGCAACAAAGAATTCTGCAACAAGTATTTCCTCAAGACCCACAAGGCCAACAAGCACGGCATTTACGTGGAGAGCGTGGGTGGCAAGCAGAACGGCGGGTCTCCCTTCGCGGGGTTGCCTCTGCCTTTACCGTTACCGTTACCGTTACCGTCACCGTCGCCGTCGCCAACCCTGCCCAAAGCTTCGGACATCGGAATCTTCTACAAAACTGCGCTTGGCGGGGGCACCGAAGTCTACTGTGACATCTGCCACAAGAAATTCTGTAACAAATACTTCGCCAGGCGTCACAAATCAAAAATACACGGCATTTTCGAAGATGGCCCCATGCCGCATGAAGCGAGCCTCTTCGCAGCTGGCGCCTACCAGAAGCTGGATTTCGAGGATCTGGGAAGTTTGGAAGGGCCGGCGCCCAAAGAAGAAATCGCCGTGGAGCTGGACGCCGTCCAAGATACGGGACTCGACGAAGACGCAGGCGTCCTCGATCCAGAGCGACACGTCGCCGAATCGAAAGAGAATATGAACTTGGCTTACAAATGCTCCAACAGTCTGGACCCGTTCTCCGCGAACAGCGCCATATTTTCTGTAGACAAACTTCGGAAACTGGGCGTCATCAACGCCGACGCTTTTTGTGAGATTTGTTGTAAGGAATATTGCAACAAATACTTTCTACGCACTCACAAGCTGAAGAGACACGGAATCATGACGAACGACAACGAAATGAACGGCCCGCGGAGCTCGAACGTTTCTTGGAACCCTTCACAGACGTGTCCGTTGAATCTGATAGTGAGCGAGCAAGGGACGAATAGCTCAGATTCCGTCGAGAAGAGCAGGACCGAACTATCAGACAGCGACGACCCTGAGTGCGACGTGTGCGGACGACGTTTCCAGAGCGCTCACCTCATGAAGATGCACCGGGCATACCTACACGTTGACAAAGAGAAACCTCGTCCCGAAGAGGAAACAAAGCCCGTCGCCGTCGAGGCGGACGTCGGAGGCACGTCCTACAATGATAACAACAATGGCCAGGGAAACGGTGACTCCATCAGCGAAGACCTACGCAAGTTGCAGACAATGATACTCCAGCTCAACAGTTTGAACGTCAACAATGCCTCGAACTGTCACATTTGTAACCGGGATTTCGAGAACGCCCACGCTCACAGATTGCACATGCTCGCAGAACACGGAGTTCTCTTCGGCGACGATAATTTTGCGGATAAAATGAAGCCTCCGTCGGAAAACGCCCCGAGTCCCGCGATCGTGGACCCACAGACATTCTGCGTGTCGTGCAACAAAGACTTTCCCACAAATTTCTGTCTGAAGCGACATAAGGAAGAGTGTCATTTGCCTCAGAACGGTGCTCCGCCTCCGGGTCCCGTCAAGGAAGAGCCAGCTCCGCAGCCATCCCCCGGAAAGCACACCTTACAGGCCAACAATCAGATCGTCACGGAAAAGAGAATTTCGCTCACGCCCACGAGCAGCTATTGTGAAATTTGCAACAAAGAGCTATGCAACAAGTACTTCATGAAAACACACATGCAGAGGATGCACGGGATAGAGATAGAGAACGGCGCTCAGATCGGAGGCGTCATTTGCGACATCTGCAACAAGGAACTTTGCAGCAAGTATTTCTTGAGAGTTCACAAGCAAAACACCCACGGGATAGTGGACGACGCGACGTCCGTTCGCGACGTGACGGGTTCGTCGCCGTCGACTAGCACGGCGGACGGGGACCAGGCTCTCAAGCCCACAGAGCTCAAGGATCTGAGCCATCGCTACTTCACGCACTTCACAGAGGCCTGTCCTGTGTGCGACAGACGCTTCAGGAGCACTAAGTGGCTCAAAGCGCACCTCCTCAACGACCACGGAGAGGTCGGCGTCGAAAAGTGGAAGGAGATGCAGTCGCAGTTCCGCGGTCAGCCTGGTCTCCCCAAACCGCAAACTAAGCAGTTCGACCCGACAGTAATCGATCAGGGAAATTCGCGATCCACGGCGCTCAAGATCCCCGGGAGCTGGGGCGACGATGGTGCCGACGGCGGAAACCGGGACGTTTTGTCCAATTTGTTCGGGACGACCGAGACCTGCGTGTACAACTGCTCCCTGTGCCCGTTCACCACCCACGCGCTGGCGCTGCTATTTGTCCACGAACGGACCCACTCTAACGCGGCGGACCATGGTAAACCGTTTCAGTGTCCGGTTTGCCCGCAGCGCTTCGAGCGGAGCGAGTTTCTCAGAAGTCACTTGCAGTCGCACCAGTTCCCCGGGTTCCCGAACCAGAACGCCCCGAAGGCCCCGGAGGAAGACGAAGCAGCGGAAGACGGCGACGTGAAGCGCGCGCTGCAGGACGCGGCGGCCAAGACGCGGGTCCCGGCCACGTACGCCGTTCCTCAGAGCCTGGGTCGCTTCATAATGCAGCCATTCCTGCTCGAGGAGGACCTGGGACGCAAGTTCGTGCCATCGGTCGTCTTCCTGCCCGTCAAGGAGAGGCTCTCGGAGCCGCTCACCGTCGCCTTCACCCTCACTCCGGCTTAG
- Protein Sequence
- MASSVEMHLDEPTPSKRALQGAETSAKKRRKQSNPLRFGGAESGDSDEPDAPLNLSAPHRPWNPYVQAANVVPTLLFPPGHSNATAATATTNTATQIRIFNPDAYCELCNKEFCNKYFLKTHKANKHGIYVESVGGKQNGGSPFAGLPLPLPLPLPLPSPSPSPTLPKASDIGIFYKTALGGGTEVYCDICHKKFCNKYFARRHKSKIHGIFEDGPMPHEASLFAAGAYQKLDFEDLGSLEGPAPKEEIAVELDAVQDTGLDEDAGVLDPERHVAESKENMNLAYKCSNSLDPFSANSAIFSVDKLRKLGVINADAFCEICCKEYCNKYFLRTHKLKRHGIMTNDNEMNGPRSSNVSWNPSQTCPLNLIVSEQGTNSSDSVEKSRTELSDSDDPECDVCGRRFQSAHLMKMHRAYLHVDKEKPRPEEETKPVAVEADVGGTSYNDNNNGQGNGDSISEDLRKLQTMILQLNSLNVNNASNCHICNRDFENAHAHRLHMLAEHGVLFGDDNFADKMKPPSENAPSPAIVDPQTFCVSCNKDFPTNFCLKRHKEECHLPQNGAPPPGPVKEEPAPQPSPGKHTLQANNQIVTEKRISLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKQNTHGIVDDATSVRDVTGSSPSTSTADGDQALKPTELKDLSHRYFTHFTEACPVCDRRFRSTKWLKAHLLNDHGEVGVEKWKEMQSQFRGQPGLPKPQTKQFDPTVIDQGNSRSTALKIPGSWGDDGADGGNRDVLSNLFGTTETCVYNCSLCPFTTHALALLFVHERTHSNAADHGKPFQCPVCPQRFERSEFLRSHLQSHQFPGFPNQNAPKAPEEDEAAEDGDVKRALQDAAAKTRVPATYAVPQSLGRFIMQPFLLEEDLGRKFVPSVVFLPVKERLSEPLTVAFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00679030;
- 90% Identity
- iTF_00679030;
- 80% Identity
- -