Ztra050089.1
Basic Information
- Insect
- Zhengitettix transpicula
- Gene Symbol
- -
- Assembly
- GCA_037074705.1
- Location
- CM073596.1:23676381-23688991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00022 0.073 15.1 0.9 1 23 236 258 236 258 0.97 2 14 3.2e-06 0.0011 20.9 2.5 1 23 271 293 271 293 0.97 3 14 0.93 3.1e+02 3.7 0.3 3 20 301 318 299 320 0.91 4 14 0.00048 0.16 14.1 2.2 1 23 356 378 356 378 0.98 5 14 6.7e-05 0.022 16.8 3.2 1 23 381 403 381 403 0.99 6 14 3.3 1.1e+03 2.0 3.5 1 23 411 433 411 433 0.97 7 14 3.1e-05 0.01 17.8 0.7 1 23 470 492 470 492 0.95 8 14 4.1e-05 0.014 17.4 0.5 1 23 511 533 511 533 0.94 9 14 0.00037 0.12 14.4 2.6 1 21 557 577 557 578 0.95 10 14 0.048 16 7.8 5.6 1 23 617 639 617 639 0.92 11 14 0.0032 1.1 11.5 5.9 1 23 683 706 683 706 0.97 12 14 0.00066 0.22 13.6 0.2 1 23 726 748 726 748 0.95 13 14 5.7e-05 0.019 17.0 2.4 1 23 754 777 754 777 0.95 14 14 0.00042 0.14 14.3 1.9 1 23 782 805 782 805 0.91
Sequence Information
- Coding Sequence
- atGCATCCGGACAGAAGTTTACCAACTGATATGGGCGATATTTGCCGCCTTTGCCTATCCAGTGAAGATGGTAGCTTACCAATTTTTGGGGAAGACGACGTTGAAGATACAAACATACCCCTGTCTTTCAGAATACTGGCTTGTGTATCTGTCGagGTATCTCTCTCTGATGGATTACCATCGCTTATATGCAGACAGTGTCTGCACCAAGTTAATACATGGCATGAATTCAAACAACTTTGTGATTCCTCACAAGCCACTCTCAAAGAGTGGCAAAATTCTACAAGACCTGCTGCCTCTGAACATGTTCTTGACAAATCTATCAACATTAAACAGGAGCCTATTGACGttgaagaagatgaagatgaCATGATGGAAATATTAGATGACAGTGATGATCGAGGTCATTGTGATGAACTACGTGATGTCTCGATGTTCGTTGATATCAAGCAGGAAGAAATTGAAGTAAGTGACCGAGAAGATTCTGCAGTAGAACATTTACTGGAGGATCACAGTAATTCCTTGGATCTTTACTCCAGTGctagagttgaaattaaaagtgaagATCCTTGTTCTGAAGTTGAAGCAGGATCAAATCTAAATACTGAAGATAATTCTGGTGAACAGCGTCCCCTTCGACGTTCTCGTCGTTCAGTGTTCTCTCGTCCAAAAAGATATAGATCAAATTTTGAAACAGATAAACCTTATAACTGTAGAATTTGCCAAAAGGCCTTTGGAAGCAAAGCTCATGTTGCTCGACATGAAAAAATTCATGGTTTTACACAATCATTAATCGGTAGTCCTGGTTCTCATGTTTGTACAGTTTGCTCAAAAGCCTATTCCAGTAAATCAAATTTAGAGCGTCACTTCCGTCTTCACACCGGTCGAAAATCCCTTGCCTGTGTCAGATGCATGAAACAGTTTCCGGATCGATCTACTTTCTTCCAACATCGCTCTGGTTCTGATGGCACATCCTGCTATTCAGCTCAATCAGAGACCAAATTACTTAGTGCACCATTATCTCCTGAGCCAAATCAACAAATGGGGCAAGATCTCTCGCAAGAATATCGTTGTTACATCTGCAGAGAAGCTTTCTTTTCACAATACCGACTAAAGATGCATATGTCATCACATTCTAGTTTCAAGTGCCACAAATGTACCAAATCATTTGGAAATGGTACTGCATTGAGTAACCACTTACGCAGTCACAACCTTCGAAGTGTAAGGAGACATACTTGCCGTTTCTGTTTACGTAGTTTTCTTACACTTACTGCTATGATTAGTCACAGGAAAAGTCATTTTAAGACTGGTGCCAAGATTGAAGAATCCTCAGAACCAACCCAGGAATTACAGGTATCACATACTAGAACTAGTGGGGCACAGTGTACCGTGTTAGATGAAAAACCTCACATTTGTGACATATGTGGGAAGGCATTTGCAGATGCACATACCCTTGGTCGGCATAAAATGTTACATGCAAAGCGTGCTTCGACAGCAACACCTGTCATGTCAACTACCCAAGCTTCGGCTTTTCCTTGCAATCAATGTAGTCGCACTTTTAGAGATCAAATAGGCTTGCAGAGACACAGGGGATGGCACACTCGACGTCCTGGTTATGTTGCTACATCACCCATTCAGAGTCCCACTCAACAACAGTCACCTAGGGTCTATACGTGTGAGTATTGTAATAAGTGTTACAACAATGCAGGATCCTTGGGAAAGCATAAAAAGTACAATTGTTCTAGAATTGTTGAAAGTGGTCAAGAATCATTTGAAGAGGAACTTCAAGTTAAACCTGAAACTTTGCAACCTTTAGTTGTTTTAGATGAAAAGGAAGGAGCTAACTTACATTGTTGTCATTTGTGCTCCAAAGTATTCCACACTGCCAAAGCTCTTGTCGTTCATCGTGGGTGGCATGCAAGAGGTCCAAAGTCTCCAACACAAGATATTATGCAGCCTATTGTCATGCAGTCTCCTGTTCTTGAAGAGGAAAAACCATATGTCACATTTGCAGAAACAACTGATACCGAGGATGAAAGTAAGTATTATAAATGTGATGTTTGCAAGAAAAACTTTAGTTGTACTTCTTCACTTCGGAAACATAAGCGTCAACTTCATTCACATAAATCTTCTCCAGGTGAAAATTCTGAGGAAGTGAACGGGGAGGGAGAAGGGTATGCTTGTGAAGTTTGTCAGAGGGTATTTAAGAAGGAGATGTATTTAATGCAGCATGTCGTCGTCCACACTGGTGTGAAAGAATACAACTGCAATGAATGTCCTAGAACATTTGGAAGACATTCAATGCTAATGAAACACAAAAAGGCAAATCACAAACCAAAACCACATTCTTGTCCTCATTgccctttaaaattttttagggaGGTGGAGCTGAAGAGGCACTTGGTTCTTCTACACAACGAAGAAGGAGAAGATTCTGAGAAATTAACAGCAAATTCTGATGGGTTAGCCACTATTAATGTAGCCGAGGATGAACTAGAGTCTCCTGACAAGTCCACATTGATTTCAAATGATGGTGATGCTATTGAAAATGGAGATCCAGAAGAACAAGGTGGAATAGAGACTGATAAATTGACTAATGGTAATTCATCGCTAACTTTGGAACAAAGTTTTGTCGCAGAAGCTGAGATACAACAAGAAgttcaggaaaataatttagctGATGGTATTGAATCTTCAGATGATGGGCAGCAGGCATTTGGAGAAGTCAAAGAAACAGATCTAGACAAGAAAGAACTGAAGCTAGAAAATGCTGTGACTGTTGCAAAAGTTGATCAATTACATTGTGAAATGACTGTTGAATGA
- Protein Sequence
- MHPDRSLPTDMGDICRLCLSSEDGSLPIFGEDDVEDTNIPLSFRILACVSVEVSLSDGLPSLICRQCLHQVNTWHEFKQLCDSSQATLKEWQNSTRPAASEHVLDKSINIKQEPIDVEEDEDDMMEILDDSDDRGHCDELRDVSMFVDIKQEEIEVSDREDSAVEHLLEDHSNSLDLYSSARVEIKSEDPCSEVEAGSNLNTEDNSGEQRPLRRSRRSVFSRPKRYRSNFETDKPYNCRICQKAFGSKAHVARHEKIHGFTQSLIGSPGSHVCTVCSKAYSSKSNLERHFRLHTGRKSLACVRCMKQFPDRSTFFQHRSGSDGTSCYSAQSETKLLSAPLSPEPNQQMGQDLSQEYRCYICREAFFSQYRLKMHMSSHSSFKCHKCTKSFGNGTALSNHLRSHNLRSVRRHTCRFCLRSFLTLTAMISHRKSHFKTGAKIEESSEPTQELQVSHTRTSGAQCTVLDEKPHICDICGKAFADAHTLGRHKMLHAKRASTATPVMSTTQASAFPCNQCSRTFRDQIGLQRHRGWHTRRPGYVATSPIQSPTQQQSPRVYTCEYCNKCYNNAGSLGKHKKYNCSRIVESGQESFEEELQVKPETLQPLVVLDEKEGANLHCCHLCSKVFHTAKALVVHRGWHARGPKSPTQDIMQPIVMQSPVLEEEKPYVTFAETTDTEDESKYYKCDVCKKNFSCTSSLRKHKRQLHSHKSSPGENSEEVNGEGEGYACEVCQRVFKKEMYLMQHVVVHTGVKEYNCNECPRTFGRHSMLMKHKKANHKPKPHSCPHCPLKFFREVELKRHLVLLHNEEGEDSEKLTANSDGLATINVAEDELESPDKSTLISNDGDAIENGDPEEQGGIETDKLTNGNSSLTLEQSFVAEAEIQQEVQENNLADGIESSDDGQQAFGEVKETDLDKKELKLENAVTVAKVDQLHCEMTVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -