Ztra030278.1
Basic Information
- Insect
- Zhengitettix transpicula
- Gene Symbol
- -
- Assembly
- GCA_037074705.1
- Location
- CM073592.1:85870464-85887022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1 3.4e+02 3.6 7.3 1 23 297 319 297 319 0.88 2 13 2.9e-05 0.0096 17.9 1.3 1 23 324 348 324 348 0.93 3 13 0.00026 0.086 14.9 0.1 2 23 382 404 381 404 0.94 4 13 7.4e-06 0.0025 19.8 0.1 1 23 410 432 410 432 0.98 5 13 0.00086 0.29 13.3 0.3 2 23 444 466 443 466 0.91 6 13 4.3e-07 0.00014 23.7 2.8 1 23 471 493 471 493 0.98 7 13 2.2e-05 0.0074 18.3 0.5 1 23 499 521 499 521 0.92 8 13 0.00011 0.036 16.1 2.4 1 23 527 549 527 549 0.97 9 13 4e-08 1.3e-05 26.9 2.1 1 23 555 577 555 577 0.99 10 13 5.5e-05 0.018 17.0 6.0 1 23 583 605 583 605 0.97 11 13 2.1 7.1e+02 2.6 7.2 2 23 612 633 611 633 0.96 12 13 2.8e-05 0.0092 18.0 2.1 1 23 639 661 639 661 0.98 13 13 2.2e-07 7.2e-05 24.6 3.2 1 23 667 689 667 689 0.99
Sequence Information
- Coding Sequence
- ATGGCTGTGCAACTATACGATTCAATGTATTGCCGATTATGTGCAGAAGACAATGCCAATGGCGTTTTAATGTATTCTTCAGAAGATTCAGAACAAGATATTAGTGATCTCATTAATAGATACCTTCCGTTTAAGGTGCAGGACGATGGTAAATTGCCGAGGACAATCTGTCCGGGTTGTAACATACAACTCCAAGCCACAGTTCAATTTTTTGACCTCTTAGTGGATGGTCAAAAAAGAATAAGAGAACTTTGGAAGTTTCAGgTTGAGCAGCAAAAAAGAGCTGAGAAGGCAGGTTTAGGTGATGGCACTGATCAGCTATTGCTCACTACCTCAGTTCAAGATCCAAATGATGGAACTGACGGTGAAAATCGCATTGTTGTACAGATTATGGCAGATGGAACTTTATTCACACCGGATCATGAAATGGCTCTTAGAATGGAAGGACTGGATCGTCCTCGTCGAAAAAGAGGAAgaccaaaaaaaagtgaaattgaaGCTGCCAAAGAAAAGGAATTGATTCCAGAAGAATCTCCAGAGTTATTGGAACAAGAAATTGATGATCTACCTGATGGAGATACAGATGTAGAAGGTGATGGCAGAAAACGGAGAAAAAGAAAAGTTCCTACTAGATTTAAGGAAGTTGTGCAAGGAAAAGAATTGGAGAGAATATTTAGAGAGAATGGTGTTATTGATGAAGATGATCAGGATGATGGTGAAGGTGAAGAAGcagaagagaaaataaattctgttgatCCTGATGGTCCTGAagGTGCGGAAGTTATTGGTCACTTGGAAACTATTGAAGGGCAAGACCTGGGCGAGTTGGTTATTGTGAGTAAAAGTAAAGGAAGAGGAAGACCCAGAGGGAAACGGAGAAAAGGCCGGTACCAATGTGATGTTTGTGGCCGTTGCTTTCTACATAAGAAAAGATATTTTGTACACAAaaCTTTTCATAAAGGTGTGAAGTTTGAATGTACTGAATGTAACAAGCGTTTCACAAGTAAGGAGTACATTGAATTGCACCAGAAAACGACAGGCCACTCAGGAGaaggtaatataatttcacttaAAGGCATTATAGAAGGAATAGAAGAAGGTAAATCTGATGATTCTCCAGACAAACTGTTGAAGTCAAGGCTTCCTTGTGATAAATGTGACAAGATATTTGGTTCCAGACAAAGCCTTGCTGTTCACTTGAAAGCTGTACATGAGGGAGTAAAACCTTTCTCCTGTGAAGTTTGTGGGAAGAAATTTGCATATCCAAATAGCATCAGAGCTCATATGCTAGTGCACGAGGAACAAAAGCGACCACCTGAAAAGGCACTACCTTGTGAAGTTTGTGGAAAGTTGTTCAATCATACCAGTTCTCTTATATATCATAGAGAAGCAGTTCATAACAGTAGGATTTTTGTGTGCAACAAATGTGGTAAAGGTTTCAAACATAAACAGCTTCTACAAAGACATCAACTGGTTCACTCAGATAACCgCCCTTTTGCCTGTAAATTTTGTGGTGCTACATTCAAGTCTAAAGCAAATCTGATAAATCACCAACCAACTCATACAGGAGAGAAGAAATTCTTTTGTGAATTGTGTGGCCAACAATTTGCTCACAAAACTAGTCTAACATTGCACTACAGGTGGCATACTGGCCAGAAACCTTACCAATGTCATGTTTGTAGTAAAACCTTTTCACAAAATGGAAATCTGCAAGAACATTTACGAATTCATACTGGTGAGAAACCTTTCTGCTGTGATTTTTGTGGTAGAAAATTCACAACATCATCTCAgTTTAAACTGCATGTGAAAAGGCACACAGGAGAACGACCATGGAAATgtgaattttgtaataaatcatttctCCACAAAGATACTTGGAAATGTCATACAAGACGGCATAAGGGAGAGAGGCCATTTCAATGTGATTATTGTGCAAGAAGTTTCACTGAACATTGGGCACTAAAAAAACATCTACGACTGCATACAGgaGAGAAACCATACAAGTGTAACATCTGTAACAAAGCTTTTGCTGATTGTTCCAATCTTACTAAACACAAAAAGGTTCATCTGTCAGTTCAGAATACAGGCCAAACAACTGTTGACCGTACTGTTTGGAACATAATACATAGTCGCTTGTCTAAAGAGGTTGAAAAAGACGTAGAGACGGAAGGAACAGAGCAGGGTGTAGAACAAATCATATACGTTACCTATCAGGATCCTGATGATCCAACTGCAGCTCGCACATTGCACATTGTGGACAGCTCAACTGATACATTTCCAAAAGGGGCATCACTCTTGGCTCAACCCCAGGAACCTAAGTTGCAGCAAGAGGATAACATACAACCTGATGATTATCAGTTAGAGCAGGCCCCACCTTCATTGCATGTTATTGATGAAGAAGGGAATCCAGTGCAGATTACTATACAAGATGTAAGAGAATTGCAGATTACAACCACAGATGTTACAACTGCTGATGGACAAACCATCCAACTTGCTTCAGAAAACCCCCAATTTCCTCCTGAAGAAGCACTTACACAAGAAGTTAATGAAGAAACTGTGCAACCAGAAGTTCCTTCTGAGCAGAGTGTGCCTTTAGACATTCCATCAGAAGAAGCGCCGCCAGTTGTTGGAGAACAAGCAATAGAATTCACAACACCTGATGGGCAGAAAATGAGACTGGTTGCTTCTTTAATGCTTGCTTCAGACTATATACTACAGTCGTAA
- Protein Sequence
- MAVQLYDSMYCRLCAEDNANGVLMYSSEDSEQDISDLINRYLPFKVQDDGKLPRTICPGCNIQLQATVQFFDLLVDGQKRIRELWKFQVEQQKRAEKAGLGDGTDQLLLTTSVQDPNDGTDGENRIVVQIMADGTLFTPDHEMALRMEGLDRPRRKRGRPKKSEIEAAKEKELIPEESPELLEQEIDDLPDGDTDVEGDGRKRRKRKVPTRFKEVVQGKELERIFRENGVIDEDDQDDGEGEEAEEKINSVDPDGPEGAEVIGHLETIEGQDLGELVIVSKSKGRGRPRGKRRKGRYQCDVCGRCFLHKKRYFVHKTFHKGVKFECTECNKRFTSKEYIELHQKTTGHSGEGNIISLKGIIEGIEEGKSDDSPDKLLKSRLPCDKCDKIFGSRQSLAVHLKAVHEGVKPFSCEVCGKKFAYPNSIRAHMLVHEEQKRPPEKALPCEVCGKLFNHTSSLIYHREAVHNSRIFVCNKCGKGFKHKQLLQRHQLVHSDNRPFACKFCGATFKSKANLINHQPTHTGEKKFFCELCGQQFAHKTSLTLHYRWHTGQKPYQCHVCSKTFSQNGNLQEHLRIHTGEKPFCCDFCGRKFTTSSQFKLHVKRHTGERPWKCEFCNKSFLHKDTWKCHTRRHKGERPFQCDYCARSFTEHWALKKHLRLHTGEKPYKCNICNKAFADCSNLTKHKKVHLSVQNTGQTTVDRTVWNIIHSRLSKEVEKDVETEGTEQGVEQIIYVTYQDPDDPTAARTLHIVDSSTDTFPKGASLLAQPQEPKLQQEDNIQPDDYQLEQAPPSLHVIDEEGNPVQITIQDVRELQITTTDVTTADGQTIQLASENPQFPPEEALTQEVNEETVQPEVPSEQSVPLDIPSEEAPPVVGEQAIEFTTPDGQKMRLVASLMLASDYILQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -