Ztra012552.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zhengitettix transpicula
Gene Symbol
-
Assembly
GCA_037074705.1
Location
CM073590.1:255855031-255858253[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.3e-06 0.00042 22.2 2.3 1 23 87 109 87 109 0.98
2 15 1.7e-07 5.7e-05 24.9 0.4 1 23 115 137 115 137 0.99
3 15 4.3e-06 0.0014 20.5 0.3 1 23 143 165 143 165 0.99
4 15 4.6e-06 0.0015 20.4 0.6 1 23 171 193 171 193 0.99
5 15 2.8e-05 0.0092 18.0 0.6 1 23 199 221 199 221 0.95
6 15 5.7e-05 0.019 17.0 1.9 1 23 227 249 227 249 0.98
7 15 5.6e-06 0.0019 20.2 0.9 1 23 255 277 255 277 0.99
8 15 3.4e-06 0.0011 20.8 0.2 1 23 283 305 283 305 0.99
9 15 0.029 9.6 8.5 0.4 1 20 311 330 311 333 0.87
10 15 3.9e-08 1.3e-05 26.9 3.1 1 23 368 390 368 390 0.99
11 15 1e-05 0.0034 19.3 0.4 1 23 396 418 396 418 0.98
12 15 7.1e-08 2.4e-05 26.1 0.7 1 23 424 446 424 446 0.99
13 15 4.3e-07 0.00014 23.7 0.1 1 23 452 474 452 474 0.99
14 15 0.00014 0.047 15.7 0.5 1 23 480 502 480 502 0.98
15 15 0.00075 0.25 13.5 0.0 1 23 517 539 517 539 0.98

Sequence Information

Coding Sequence
ATGCCTGAAAAGACAGACGATGGGCCCGACCTCGACACCCTGTCCGAATCCTGCAACGTTGTTGTGGTGATTGAAAAACTTAAGAAATGGGTTGCGGCTGGTAAGATTGAAACGCGCGCCATGTCGCAACTGCCGCGTGACGTCAGACGGAGCAAAGACTCGCTCTCGACGTTCCAACATCCGTGCACTTCTTTGACGCCACTTCCGATGCGGGATTTGAGGATGCTGGAGCCGTTGTACGACGCGGCGGGCAAGACGCACCAGTGCCCTGTGTGCTCCAAGTACTTCGCCAAGACGAACAACCTGACGGTGCACATGCGCACGCACACGGGCGAGAAGCCGTACGAGTGTCCGGTGTGCGGGAAGCGCTTCTCGCTGTCGAGCGTGCTTCTGCGCCACACGCGCACGCACACGGGCGAGAAGCCGTACCAGTGCGCCGAGTGCGAGCAGCGCTTCTCCGAGTCGGGCGTGCTGCTGCGCCACATGCGCACGCACACGGGCGAGCGGCCGTACCGCTGCTCCGTGTGCGAGGAGCGCTTCTCGCAGTCGGGCATCCTGCTGCGCCACATGCGCACGCACACGGGCGAGAAGCCGCACGCGTGCGCGCTCTGCGAGAAGCGCTTCTCGCGCTCCGGCATGCTGGCCAGACACGTGCTGTCGCACACGGGCGAGAAGCCCTTCGAGTGCGCCGAGTGCCACAAGCGCTTCGCCCACTCCGGCATCCTCCTGCGCCACATGCGCGCCCACACGGGCGAGAAGCCGTACCAGTGTCCGCAGTGCCGGCGCCGCTTCTCGCAGTCGGGCATCCTCGTGCGCCACCTGCGCACGCACACGGGCGAGAAGCCGTACCAGTGCGCCGAGTGCGACCGCAGCTTCTCGCGGCCGGACATCCTGCTGACGCACGTGCGGACGCACTCTGGCGAGAGCGCCTTCCAGTGCCCCGAGTGCTACGAGAGCTTCCCCTGCCGCGAGGACCTGCTGGAGCACGCCGGCGGACACGCGCAGGAGCGCGGCTACGAGCGCGTGGACTGCGACGCCTCCAGACCGCCCCCGACGCCGGCGGCCTTCCGCCGCAACCGCACGCCCACGGCCGAGAGGCCGTACCAGTGCGCAGAGTGCGGCAAGTGCTTCCCCAGGACCACCAACCTGTCGAAGCACATGAAGACGCACACGGCGGAGCGGCGCTTCCGCTGCCCTCAGTGCGACCGCTCCTTCCTGCAGCAGTCCTCGCTGGTGGCGCACTCGCGGGTGCACACCAAGGACCGGCCGTACCGCTGCAAGGTCTGCGCCAAGGGCTTCACGCAGTCGGGGAACCTGGTCACGCACATGCGCACGCACACGGGCGAGCGGCCCTACGTGTGCGACCGCTGCGGCAAGGGCTTCGCGCAGTCAGACACGCTGGCCAGCCACGTGAGGACGCACACGGGCGAGAAGCCCTTCGTCTGCGTCAAGTGCGCCAAGGCCTTCGCCCACGCCGCCGCCTACAGGACGCACGTGCGCAAGCACTTCGCCGACGACGCGGAGACGCCGACCGTCGACGTCAAACCCTACCGCTGCGCCGAGTGCGACATGGCCTTCCTGCAGCCCGCAGGCCTCCTCAGGCACGTCAAGGTCCACGCCACTTGA
Protein Sequence
MPEKTDDGPDLDTLSESCNVVVVIEKLKKWVAAGKIETRAMSQLPRDVRRSKDSLSTFQHPCTSLTPLPMRDLRMLEPLYDAAGKTHQCPVCSKYFAKTNNLTVHMRTHTGEKPYECPVCGKRFSLSSVLLRHTRTHTGEKPYQCAECEQRFSESGVLLRHMRTHTGERPYRCSVCEERFSQSGILLRHMRTHTGEKPHACALCEKRFSRSGMLARHVLSHTGEKPFECAECHKRFAHSGILLRHMRAHTGEKPYQCPQCRRRFSQSGILVRHLRTHTGEKPYQCAECDRSFSRPDILLTHVRTHSGESAFQCPECYESFPCREDLLEHAGGHAQERGYERVDCDASRPPPTPAAFRRNRTPTAERPYQCAECGKCFPRTTNLSKHMKTHTAERRFRCPQCDRSFLQQSSLVAHSRVHTKDRPYRCKVCAKGFTQSGNLVTHMRTHTGERPYVCDRCGKGFAQSDTLASHVRTHTGEKPFVCVKCAKAFAHAAAYRTHVRKHFADDAETPTVDVKPYRCAECDMAFLQPAGLLRHVKVHAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00678730;
90% Identity
iTF_00678730;
80% Identity
-