Basic Information

Gene Symbol
Kdm5a
Assembly
GCA_037074705.1
Location
CM073595.1:67692762-67721410[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.6e-10 2.3e-06 29.5 0.0 38 89 19 65 16 65 0.89

Sequence Information

Coding Sequence
ATGCTATACTGTAGTCCACTTACTGCTGACACGCAGTCCAGGTCCTGGGTCTATAGTGTCGTCAGAGGAGGAGTTGATGCTGTTACAAACAAGAAAATGTGGAATAAGATAGCAACAAAAATGGGATGGCCTTCAAAAAGCTCTATCGGCCCATGGTTAAAAATGCAATATGACAAGATTTTATATCCTTTTGATGTTTTTCAAGAAATGAAATCTGtgAAggagacaaacaaaaataataaaaataacgaagaaTTGGGAGGTGATTCTAAGATGAGTGGACCTGATACAAAAAAGGGGAAATCAAAACCGAAGCCCAAATCAAAGAAATCAAAAACAGACATAGACCCACTGGCAAAATACATTTGCCGTCACTGCTACAGGGGAGATGCAGAGGCATCTATGCTTTTATGTGATGGCTGTGATGACAGCTATCACACATTTTGCTTGATGCCTCCACTGGTTGAAATTCCAAAAgGGGACTGGAGGTGTCCAAAGTGTGTTGCCGTGGAAGTCAGTAAACCTGTGGAAGCATTTGGATTCGAGCAAGCTCAACGAGAGTATACATTACAACAGTTTGGTGAAATGGCTGATCAGTTTAAATGTGACTATTTTAACTTGCCAGTTCATATGGTGCCATTAAACTTGGTTGAGAGAGAATTTTGGAGGGTGGTTTCATCCATTGATGAAGATGTTATAGTTGAGTATGGAGCTGATCTTCACACTATGGATCATGGTTCAGGGTTCCCTACTAAAGCTACAGATGTTGACAAAAAAGATGAggcCTACACAAATTCGGGTTGGAATCTGAACAACATACCAGTTCTGCCAGGTTCTGTTCTTGGACACATAAATGCAGACATCTCTGGCATGAAAGTACCTTGGATGTATGTGGGAATGTGCTTTGCCACTTTCTGTTGGCACAATGAGGACCATTGGAGCTATTCTATCAATTATCTTCATTGgGGAGAAGCAAAAACATGGTATGGAGTTCCAGGCTCTAAAGCTGAAGAATTTGAAGAAGTTATGAAAAAAGCAGCACCTGAATTGTTTCAGTCACAACCAGACTTGTTGCACCAGTTAGTAACTATCATGAATCCAAACATTTTGATGGATGcagGTGTACCAGTTTGTCGAACAGACCAACAAGCTGGAGAATTTGTGGTAACATTTCCGCGGGCTTACCATGCAGGTTTTAATCAAGGTTACAACTTTGCGGAAGCTGTTAATTTTGCACCTGCTGATTGGCTGCCAATGGGACGTGAATGTATTAGTCATTATTCCACTCTAAGGagattttgtgtattttctcaTGATGAACTTGTTTGTGGTATGGCTGCACAAGCTGAAAGTCTTGACCTTCACATAGCTAATGCAACATTCAAAGACATGTTAAAAATGGTAGAAAATGAGTCTAACCTGAGGGAAACACTGTTTGAATGGGGGTGCAATGAAgctgaaaaagaaaactttgAGTTAGTCCCCGATGATGAGCGGCAGTGTGATGTATGCAAAACCACGTGCTTTCTGTCTGCAATAACTTGCCCTTGTGATAAAGACCGCTTAGtatgtttaaaacattttaaggaATTGTGTAATTGTGCACCTTCACAACACAAACTACgGTATCGCTATACACTGGATGAACTACCAGAATTGTTGGAGAGATTAAGAAAACGAGGAGAAACTTTTGATGATTGGATTGACgctgttcagtctgctgttgaATCAGATAATGAACAGAAGacaggtcttgaagtcttcaaaaatttggttaatgaagcaaaggaaaaaaatattccagagTCAGAGTTGCTGCACAATTTGGAGGCAATTGTTAAAGAAGGTGAAAAATGTGCAGAAGTCATTCGTCAGATGTGCTTCTGCAAGTTGGGAAGaccAAGACCTGAAAGTTTGAACAATGTTTACCTGCCACTGGATGAACTCATTACATTTTATGATCAGGTTCTACAGCTTGCTTGTGCCATACCTGGGACTGACACATTGAAAAAGTTCATAGAAAAGTATACCAAATTCAGGAATCAAGCAAAAGTTctcttaaataaaaagtatcctCCTCTTGATGAACTTGAAAATACTTTGGAAATTGGAGAAAATCTAGAGTTTGCAATTGAGGAAACAGCCAAGTTAAAGCAGTATTTGTCACTTGTAAAATGGTTGGAAGATGTTAAGGAAAAAAGAGTACATCACCAATCACTGACAAAGGATGTAATATGTAATCTTCTACAGGAAGGAATTACTTTTCTTCCACAAGATGATGTTGAAGTGCAAATAAGGGAACTGCAACACTTGGTAGCAAAAATAGATGCATGGGAAGAAGCTGCAAAACAGTGTTTGCTTGgaaaACAAATACCATCAGCAATGGGTTTAAAGACGATGGTGGAAGAAGGAAAAAAGATACCAGCATCTGTTCGAAATCTAGATACTATttgtgaagtttttaaaaaggTCCAAGTCTGGTTTgctaaagtaaattattataagGCAAATAAAGTAAGACTTTATGTGGACACTATTGACAAATTAGTCATGTGTGCAAAGTCCTTACCCATTCACATAGATGCATTGCCATCATATGAAGAGCAATTGTTGGAAGCAAGGACATGGCAAGAGAAGCTTGAGAAAacctttttaaagaaaaattctcGTTACACACTTTTGGAGGTTCTTTCTCCTAGAGCACATTGGGATGAGCCACCATATTTGGAAAGGCAGTTTACTAAAGAAGAAAGTTTTCTGGAAACTGAACCATTCCTGTCTGTTGGCATTGACTTGCATGGGAAGAGAGAACCTGCGGATGTAGTTGCAGAGTTTAAGAAAGCAGAAGAATtagaatttcataatataaaagaaataagagCTAAAAACTCAAAGAAGTGGGAGGATGGTCTACAAACAAATGATTTCTGCATATGTGGTGGTTTAAAGAAGAAAGAGAAGATATTCCAATGCAGTCTATGCTTGGATTGCTTTCATGaagacTGTGTTCCTAATGTGAAACCTCAGGCCAAATTCAGATCTATGTGCACATCACAAGATCTGCTGTCAATATGGCAAGGAAGGTTCCTCTGTCCAAATTGTGCAAAATCTCGTCGTCCAAGGCTTGATACGTTAATTGGACCTCTGGTACAGCTTCAGAAAATCCCAACAAGAATACCAGAAGGTGAAGCACTGCAGTGCTTGCTGGAACGTGCTATGAGTTGGCAGGTGAAAGTAAAGAAAATCTTAGCAACAGAAGAATTTGCCTCTGCGCTTACACTTATTTCAGAATTAGCACAAAAGTTTGTTCAAGCAGCAGCTAAACAGAAAACAGAAAAGATAATACTAGATGAATTAGAGAAGTGTGATAAGAGATGTgGGCAGGAAAAGAGGGTAGGTGTCGACAAAACAAAACCTCTGATAACACTCAGCAGCAGTGCTCAGAAGTTGCTCGAAAACTTGCTGTTGGAATGGGATTTGATGGAACTGTCATTAGATGAAGGATTGTACCTGAGTAGAATTCATCAAGCCTCTAATTTCAGCCGAGAGCAGATTGAACAGGTGGCCAGGCTGCAATTCCGTGAAGCTGGCAACAGGACATTTGCATACCTGTATACGTGCAAAACACCAAAGACTCTGCAGTCTGAACCCCGTTCAGAGAAGGATGGCGAACATCCAAAAAGGAAACTGCGACCTACAACCAAGAGAAAGGCAAGTTTTACGAAGGTAGAGAGTGCTTCTCCTCAATTGAAGAAGAAGTGTATTAAGTCGTCGCCACAGCCAAGAAATACAGGTGAAGCAGAAAGAAAGGAAGATGAAGAGGACTGTGCGAGCCCACGTTGTCTCAGACCCGTTGGACTTTCTGTGGACTGGGTTCAGTGTGACGGATGCCAGAGTTGGTTTCATCTCTATTGTTTGGGTCTCCATCGTAGGGACGTCAAACCAAATGAAGACTTTCTTTGTGAGGGCTGCAAGGCATCATTTATGAGCGATAAGACGAAAGAGCGTCGTATTCATCGTCTCGCCATGATGCCGCCTCCTCCTTGGAGATCGGACTTCTAG
Protein Sequence
MLYCSPLTADTQSRSWVYSVVRGGVDAVTNKKMWNKIATKMGWPSKSSIGPWLKMQYDKILYPFDVFQEMKSVKETNKNNKNNEELGGDSKMSGPDTKKGKSKPKPKSKKSKTDIDPLAKYICRHCYRGDAEASMLLCDGCDDSYHTFCLMPPLVEIPKGDWRCPKCVAVEVSKPVEAFGFEQAQREYTLQQFGEMADQFKCDYFNLPVHMVPLNLVEREFWRVVSSIDEDVIVEYGADLHTMDHGSGFPTKATDVDKKDEAYTNSGWNLNNIPVLPGSVLGHINADISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGEAKTWYGVPGSKAEEFEEVMKKAAPELFQSQPDLLHQLVTIMNPNILMDAGVPVCRTDQQAGEFVVTFPRAYHAGFNQGYNFAEAVNFAPADWLPMGRECISHYSTLRRFCVFSHDELVCGMAAQAESLDLHIANATFKDMLKMVENESNLRETLFEWGCNEAEKENFELVPDDERQCDVCKTTCFLSAITCPCDKDRLVCLKHFKELCNCAPSQHKLRYRYTLDELPELLERLRKRGETFDDWIDAVQSAVESDNEQKTGLEVFKNLVNEAKEKNIPESELLHNLEAIVKEGEKCAEVIRQMCFCKLGRPRPESLNNVYLPLDELITFYDQVLQLACAIPGTDTLKKFIEKYTKFRNQAKVLLNKKYPPLDELENTLEIGENLEFAIEETAKLKQYLSLVKWLEDVKEKRVHHQSLTKDVICNLLQEGITFLPQDDVEVQIRELQHLVAKIDAWEEAAKQCLLGKQIPSAMGLKTMVEEGKKIPASVRNLDTICEVFKKVQVWFAKVNYYKANKVRLYVDTIDKLVMCAKSLPIHIDALPSYEEQLLEARTWQEKLEKTFLKKNSRYTLLEVLSPRAHWDEPPYLERQFTKEESFLETEPFLSVGIDLHGKREPADVVAEFKKAEELEFHNIKEIRAKNSKKWEDGLQTNDFCICGGLKKKEKIFQCSLCLDCFHEDCVPNVKPQAKFRSMCTSQDLLSIWQGRFLCPNCAKSRRPRLDTLIGPLVQLQKIPTRIPEGEALQCLLERAMSWQVKVKKILATEEFASALTLISELAQKFVQAAAKQKTEKIILDELEKCDKRCGQEKRVGVDKTKPLITLSSSAQKLLENLLLEWDLMELSLDEGLYLSRIHQASNFSREQIEQVARLQFREAGNRTFAYLYTCKTPKTLQSEPRSEKDGEHPKRKLRPTTKRKASFTKVESASPQLKKKCIKSSPQPRNTGEAERKEDEEDCASPRCLRPVGLSVDWVQCDGCQSWFHLYCLGLHRRDVKPNEDFLCEGCKASFMSDKTKERRIHRLAMMPPPPWRSDF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00678287;
90% Identity
iTF_00678287;
80% Identity
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