Basic Information

Gene Symbol
stc
Assembly
GCA_907165235.1
Location
OU015626.1:20317915-20343603[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 4.6e+04 -6.3 4.0 15 19 420 424 419 426 0.66
2 14 0.048 1.1e+03 1.1 1.4 2 10 452 460 452 460 0.92
3 14 3.6e-05 0.82 11.1 18.1 4 19 468 483 466 483 0.93
4 14 4.2e-08 0.00097 20.4 13.0 1 19 519 537 519 537 0.97
5 14 2.2e-05 0.5 11.7 13.6 1 19 577 595 577 595 0.99
6 14 2e-05 0.46 11.9 11.7 1 19 636 658 636 658 0.87
7 14 2 4.6e+04 -5.3 2.2 6 10 688 692 688 692 0.94
8 14 0.0012 28 6.1 5.0 1 11 698 708 698 713 0.94
9 14 0.084 1.9e+03 0.3 0.2 4 10 717 723 715 725 0.93
10 14 5.9e-06 0.14 13.6 15.0 3 19 731 747 729 747 0.92
11 14 0.0021 48 5.4 11.3 1 18 786 802 786 803 0.82
12 14 2 4.6e+04 -4.8 2.0 9 13 809 813 808 814 0.79
13 14 2e-08 0.00047 21.4 12.9 1 17 839 857 839 863 0.84
14 14 0.00044 10 7.6 3.4 1 11 869 878 869 879 0.98

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACGACGGTTACGCTTATAACAATATGTATCAAGACCCTAATACGTGGAATGGTGATGTGAATAACCAATACTCAAACCAAGCGTACTACCCCAACAATCACTATGATTCTTCCAACCAGTATGTGAGTTTTGAAGAGTTTATAAGTCAGATGCAGAATACAAGTATAGTTCCACAAAATGCTGCCAACTATAATAATGTCCATTACCAAAATTACCCCCATGGCCAATACAATTATCAGAACATGCCGTCCACCTCTCAGAACACTCAACTTAATACTTTTAACTATGGACCAAATCCTAGTAATGTTACAAATAGAGTAGAGACTTACCAAGTTAATGTACAGAACCAATACAATAATGTGGTACAAGACACAAATCCTTATACCAATGAAATGGtgtttaaatcgaatttaacTCCCACAGCCACTGAATTTGTGCCTAAAAGCAGTTTAGTAACGCCTAGTTCTAGCACACAGAATCTTGTCCAACCAGAATCGATGTTCAATGGAGATACTGAAGTTAAGAGTAAAAACAAACCCAGCAGTTCTACAGACACAAACTGGAGAGAGAGATCACAATCACATAACGACAAAAGTCATTCAAATAGTGATACAAATAAACGTCATGAGTCAAATAGCCGTTCATATGATTCACAGAGGAACCAAGAATCAAGTAATCGTAACAAAGAGCACAATGGACGTCATTATGAAAACAGTAGCCGTAATTATGAATCTAGTAGCAATAACAGGAGTCAATCTAAATTAAATCCTAAACCAAAGAGTAAAGACTCTGAACCGGTTCGCACATTTTATAATAGCTCTATTGGTAAAGGTCAAGAATCAAGAAATGGTAGAAGTGAAAATTCAGGGAAGTATAGGAATTCTGTGGGAAGTCAAAGACTGAGACCCAATGACCGTAATGTTGCTGATGATGAACAGTTTGCTAAAACATATCTACAGCACAGAGATGAAAAGACAGGAAAATCTGATAAAGCAGAGCTGTCTAGTCCCATGAGGAATAAGAAAAAGAATGATAAACACGAAGTTAATCAAGAAAATACAGAGTTGACGCAACGTGAACGACTTAGTGAGCAATTAGATAAAGGCACATTGGAATGCCTGGTGTGCTGTGAACGTGTGAAGCAGACAGACCCAGTATGGTCCTGCAGCAACTGTTATCATGTGTTACATCTGAAATGTGTTCGGAAATGGGCTATGAGCAGTATGGTTGAAGGTAAATGGCGTTGTCCAGCCTGTCAGAACTGTAATGAAGAAGTCCCCACCGAGTATCGATGCATGTGCAGTGCGGTCCGCTGTCCCGAATACCAGAGAGGGTCTAGCGGCGCCCACACATGTGGCAAAGCTTGCAAGAGACCCCGAAATTGTCCCCATCCATGTACACTACTTTGTCATCCTGGACCCTGTCCACCTTGTCAAGCAACCATTAGCaagcAATGTGGTTGTGGTGCGGAAACTCGTTCTGTCTTATGCAGTAGCAAACTACCACAAGTTTGCGGACGTGTGTGTAACCGAAAACTAGACTGCGGCGTACACACTTGTGCTAAAGATTGTCACGAGGGTCCCTGTGAGACATGCACCGAGACCGTTACCCAAGAGTGCCACTGCCCGGCGCTCCTGTCGCGGCAGGCGGCGTGCGCGGaggcgcgcggcgcggcgcgctgGTCGTGCGGCGCGGCGTGCGGACGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCCGCGTGCCACGCGCCTCCCTGCCCGCCCTGCCCGCTGCTGCCCGCCGCCGTGCCCACCTGCCCTTGCGGCAAGACTCGATTGGACAAAGACCAACGCAAGTCGTGCACCGACCCCATACCGCTCTGCGGTAACATTTGCGCGAAACCGTTGCCTTGCGGGCCCGCTGGCGATAAACACTTCTGCAAGATGGATTGTCATGAAGGTCCGTGCCCCGTATGCCCCGACAAAACATTACTTCAGTGCCGTTGCGGCCACTCTAGTCGCGAGGTACCCTGTGCTGATCTGCCTCAAATGATTAACAACGTACTGTGccagaaaaaatgtaataagAAGCTGTCGTGCGGGCGGCACCGGTGCCGCGCGGCGTGCTGCGGCGCCGCGGGCGCGCCGGCCGCGCACCGCTGCGCGCTGCCCTGCGGCCGCGCGCTCTCGTGCCAGACGCACCGCTGCGAGGAGTTCTGCCACACGGGCCACTGCGCGCCCTGCCCGCGCCTCAGTTTCTCGGAGCTGTCGTGCGAGTGCGGCGCGCAGGTGGCGCTGCCGCCGGTGCGGTGCGGCGCGCGGCCGCCCGCGTGCAGCGCGCcgtgccgccgccgccgcgcctgCGGCCACGCGCCGCTGCACGCGTGCCACGCCGGCGCCTGCCCGCCCTGCGTCGTGCTCACGGCCAAGCGCTGCCACGGCGGACACGAGGAGCGTAAAACAATACCGTGTTCCCAAGAGGAGTTCTCTTGCGGTCTACCATGCGGTAAACCGCTACCATGCGGCAAACACACGTGCATCAAAATATGTCACAAAGGGCCTTGTGATACTGGCAAATGCACCCAGCCGTGTAACGAAAAGCGGCCGAGCTGCGGGCACGCGTGCGCGGCGCCGTGCCACTGGCgcgcgggcgggggcgggggcggtggcgcgggcgcggggcgcgggggcTCGAGCGAGGGGCCGGGGCCGGTAGagggggcgcgggcggcgggcgcgggTGACTCGTGCCCCAGCGCGGCGCCGTGCCGCCGGCCCGTGCGCGCCACGTGCCCGTGCGGCCGCCGCTCCGCGCAGCGCGCATGCGCGGACAACGCCCGCGACCTCGCCAAAATAATGAGTGCATTAGCGGCCTCGAAATTACAAGAAGGTGGTACTGTCGATATCTCTGAAGTTCAACGCCCTGGAATGATGCTGAAAACACTGGAGTGCGACGAGGAGTGTCGCATGGAGGCGCGCGCGCGGCAGCTGGCGCTAGCGCTACAGATTCGCAACCCTGACGTTTCGGCCAAGCTGGCGCCTCGGTACAGTGAGCACGTGCGCGCCACGGCCGCGCGCGAGCCCACCTTCGCGCAACACGTGCACGAGCGCCTCACCGAGCTCGTGCAGCTGGCCAAGAAGTCAAAGCAAAAGACGCGCTCTCACTCGTTCCCGTCGATGAACTGGCAGAAACGTCAGTTCATACACGAGCTGTGCGAGCACTTCGGCTGCGAGAGCGTCGCGTACGATGCTGAGCCCAACAGGAACGTAGTGGCCACTGCAGACAGGGAGAAGTCGTGGCTGCCGGCCATGAGCATACTAGAAGTGCTGGCGCGCGAAGCGGGCAAAAGACGAGTTCCCGGCCCTATACTGCGCGCCGCGCCTACTACCGGCTCCGCTTCCACCTCCGCCATCGCCTCAGCTTCTACGCTTTCATCTAACAAATCGTCTGCCGGCTGGGCCACTCTGACGTCAACAAACGCGTGGGCAGCGCGAAGTCAACCCAAGCCAGTCCCACAGCAGCCATTGGAGGCCAAGATAGATTACTTTGACAACCCGCCGGAGAACTAA
Protein Sequence
MSQWNDGYAYNNMYQDPNTWNGDVNNQYSNQAYYPNNHYDSSNQYVSFEEFISQMQNTSIVPQNAANYNNVHYQNYPHGQYNYQNMPSTSQNTQLNTFNYGPNPSNVTNRVETYQVNVQNQYNNVVQDTNPYTNEMVFKSNLTPTATEFVPKSSLVTPSSSTQNLVQPESMFNGDTEVKSKNKPSSSTDTNWRERSQSHNDKSHSNSDTNKRHESNSRSYDSQRNQESSNRNKEHNGRHYENSSRNYESSSNNRSQSKLNPKPKSKDSEPVRTFYNSSIGKGQESRNGRSENSGKYRNSVGSQRLRPNDRNVADDEQFAKTYLQHRDEKTGKSDKAELSSPMRNKKKNDKHEVNQENTELTQRERLSEQLDKGTLECLVCCERVKQTDPVWSCSNCYHVLHLKCVRKWAMSSMVEGKWRCPACQNCNEEVPTEYRCMCSAVRCPEYQRGSSGAHTCGKACKRPRNCPHPCTLLCHPGPCPPCQATISKQCGCGAETRSVLCSSKLPQVCGRVCNRKLDCGVHTCAKDCHEGPCETCTETVTQECHCPALLSRQAACAEARGAARWSCGAACGRVLACGAHVCRAACHAPPCPPCPLLPAAVPTCPCGKTRLDKDQRKSCTDPIPLCGNICAKPLPCGPAGDKHFCKMDCHEGPCPVCPDKTLLQCRCGHSSREVPCADLPQMINNVLCQKKCNKKLSCGRHRCRAACCGAAGAPAAHRCALPCGRALSCQTHRCEEFCHTGHCAPCPRLSFSELSCECGAQVALPPVRCGARPPACSAPCRRRRACGHAPLHACHAGACPPCVVLTAKRCHGGHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKICHKGPCDTGKCTQPCNEKRPSCGHACAAPCHWRAGGGGGGGAGAGRGGSSEGPGPVEGARAAGAGDSCPSAAPCRRPVRATCPCGRRSAQRACADNARDLAKIMSALAASKLQEGGTVDISEVQRPGMMLKTLECDEECRMEARARQLALALQIRNPDVSAKLAPRYSEHVRATAAREPTFAQHVHERLTELVQLAKKSKQKTRSHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSILEVLAREAGKRRVPGPILRAAPTTGSASTSAIASASTLSSNKSSAGWATLTSTNAWAARSQPKPVPQQPLEAKIDYFDNPPEN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-