Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.053 6.7 8.7 0.5 2 20 160 178 159 180 0.91

2 6 0.00033 0.042 15.6 0.7 1 23 190 212 190 212 0.98

3 6 0.0017 0.21 13.4 0.1 1 23 218 240 218 240 0.97

4 6 2.3e-05 0.0028 19.3 2.0 2 23 247 268 246 268 0.97

5 6 0.00027 0.033 15.9 3.6 1 23 273 296 273 296 0.97

6 6 7.6e-05 0.0096 17.6 1.4 1 23 302 325 302 325 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.053	6.7	8.7	0.5	2	20	160	178	159	180	0.91
2	6	0.00033	0.042	15.6	0.7	1	23	190	212	190	212	0.98
3	6	0.0017	0.21	13.4	0.1	1	23	218	240	218	240	0.97
4	6	2.3e-05	0.0028	19.3	2.0	2	23	247	268	246	268	0.97
5	6	0.00027	0.033	15.9	3.6	1	23	273	296	273	296	0.97
6	6	7.6e-05	0.0096	17.6	1.4	1	23	302	325	302	325	0.95

Coding Sequence: ATGACTGCCATAATATTAGCTCAGAAATTAATGAGGATGAGTCTTGATAAGagtgaatttgaaaaaattaaatggcaACGATTTAACAATATGCAGAAGAAGCACAAAACGGTTGATTCTCTAAAGCAGATATTAGATAAACAGGTGTTGAACAAAACATGCAGACTTTGTTTAAGATCTGGTGGGAGAAACATTTTCATTAGTAATCAAGACTTAGACATAGCTAATAATGTCAAACATATTTTAGGGATAGAGATCTTAGAAGGCGACGGTAAGCCACAACATATTTGCAAGTCTTGCGAGAATACAGTTCATTTGGCAGCACAGCTCAAACAAACTGCAGAAACTACACAATGGAGGTTACAGCAGGAACTTGATATGGTAGCAGAATTAACATCAGAATGGGACGGCGAGGTGTATTCTAAGTCAAGCGGCGGTCATTTCCGCGTACATGGAGCAGATGTTGCGCGTGAGTGGTCATGTGGGAAGTGCAAACGTATTTTTTATACTCATGAGGAATTTAGTGAACATGAACAGTTACCGACGTGTCGAACTACGGTTCGCTGCTACGTGTGTGAGACATGCGGCTTGGAGCTGAAGTCGATGTCCAGATTAAAAAGGCACAGGTTGACCCACACGGGGTCACTACTCTACGCATGTCCGCGGTGCCCATACCGCGGCCGCACCAAGTACGCCCTGGCCGTTCACGAGCGGGGACACACTGGCGCCCGTCCTTTGCGATGCCCCCATTGCACTGATACTTTCCCCAATTCTTCCAACCTAGCATCGCATAGACGGAAACATCTCCCGCCTCGGTATCACTGTGATGTTTGTCAAAAGGGCTTCAAATTTAAACAGGCCTTACACAACCACATAGCTACACAACACAGCAATGCTAAACCATTCACTTGTAGCTCTTGTGGAAAGACATTCTCCACCAGAAAAATGATCCTACGTCATGAACTAAAGGTACATAATCGTCCAAAAATGAGGTCGGGGATTACACCAAGTTACATTCGAGAGCAACAAGAGGAATTAAATACTTGA
Protein Sequence: MTAIILAQKLMRMSLDKSEFEKIKWQRFNNMQKKHKTVDSLKQILDKQVLNKTCRLCLRSGGRNIFISNQDLDIANNVKHILGIEILEGDGKPQHICKSCENTVHLAAQLKQTAETTQWRLQQELDMVAELTSEWDGEVYSKSSGGHFRVHGADVAREWSCGKCKRIFYTHEEFSEHEQLPTCRTTVRCYVCETCGLELKSMSRLKRHRLTHTGSLLYACPRCPYRGRTKYALAVHERGHTGARPLRCPHCTDTFPNSSNLASHRRKHLPPRYHCDVCQKGFKFKQALHNHIATQHSNAKPFTCSSCGKTFSTRKMILRHELKVHNRPKMRSGITPSYIREQQEELNT*

Sequence clustering based on sequence similarity using MMseqs2