Zpyr036989.1
Basic Information
- Insect
- Zeuzera pyrina
- Gene Symbol
- -
- Assembly
- GCA_907165235.1
- Location
- OU015643.1:1439004-1447260[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.042 5.3 9.0 0.1 2 23 212 233 211 233 0.97 2 12 0.0018 0.23 13.3 4.1 1 23 239 262 239 262 0.97 3 12 5 6.2e+02 2.5 3.8 1 23 278 300 278 300 0.93 4 12 4e-06 0.00051 21.6 2.6 1 23 595 617 595 617 0.98 5 12 0.00035 0.044 15.6 1.4 2 23 623 645 622 645 0.96 6 12 0.00018 0.023 16.5 0.2 2 23 654 675 653 675 0.96 7 12 0.0026 0.33 12.8 2.5 2 23 679 700 678 700 0.97 8 12 0.053 6.6 8.7 0.4 2 23 714 736 713 736 0.96 9 12 0.0006 0.075 14.8 0.3 1 23 742 764 742 764 0.96 10 12 0.00099 0.12 14.1 0.7 2 23 771 792 771 792 0.97 11 12 0.079 9.9 8.1 5.6 3 23 800 821 799 821 0.96 12 12 3.3e-05 0.0041 18.8 0.3 1 23 825 848 825 848 0.94
Sequence Information
- Coding Sequence
- ATGGACGAAGAATTTGAGACGAAATACGGCAAGACATATTCAAATGCACAACAAAATATTACCATAAAACCGCGTAATTGTAACGAAATGGATAGTAATACGATATCCCCGACAAAGGAAGAATCATTGACTACTAAGAAGGCGGTAGAACTATTGCTTGCAGGAACACTTAAATATAAAGTTTGCCGCTATTGCTTGACTGTAACATCATCCCTATCTGAACTGGATCAAATTTTGCACGTTGCTGGAAAAGGAACACTCCATAAAATCACCATTAGAGATATGGTTGCCAGTTTTTACCCATTCAAGGTTGTCGACGACCCAAATCTTCCtaataaaatatgcaataagtGCTTGAATCAGACAATGAGAGCATATTTTTTTGCACAACAGTGTGAACAAACAGAACGAGCTTTACACAACTGTTTTGATGATATTTATGACAAGTTAGAGAAACTGGATCCTTTAGAACGTCCTAAAAAACGTGGTAGACAAAAACAAAATCCAAACCACAATGTAATACATGCAGAACATGAAAATGTTATAGATTATGCAGAACCTATAATTAACTTGATTAATACTGGTTCTGTACTATTGGATAATGATAGTGAGGAAGCTGAAATTGACAAATTGAAGTGTCCAAGGTGCTGGTTAGTGCTACCCAATCTAGAATCACTATTAAATCATGAGAAAATGCATCCGAAGACCATGTGGTACCATTGCCAGGCATGTGGCAATTCATATGCTAAAAAAACTCACCTAAATAGGCATATTAAAAAAGTTCACATACTTGGTGATGATGTTAGTTTACCAGCCAATAATAACCAAGGCTTTCAATGCATGGAATGTGGTAACTCATGTGAAAATTACAATCAACATTTACAACACATTGAAAAGCATAAGTTCAAAATGGTTTTGGATTACTTAGTGAACAAGAAAATGGATAAGTTATGTGCCGTCTGTCTAGACAAAAGTGTAAAAATGGTAGATTTGGAAAAAACAGTCTGCCTACATGGAGGGTATCCAGAAATTAGTGGCAATAAAAGTCTGTACAACATTTTGGGCTCCACAATACCAGAGATGAATTTCCAGTATAATTATACTGGAACAAAAATATGCGAAAAGTGCCTTAATCACGCGTTAATATCTTATATCTTTATACATCGAACTTATTCAGTTAGGAATCGGTTATCAACCTGTGTCAGCCTCTTTCTCGagaatttaagtaaaattaacgaagaaaatggTAACGTATTTGTAGAGATATCACAAGACATTATACTGCCCATAAgagaacaaaataattttgatgaaTATTTGGATTATGATGAAACAGATGAAGTTGATGAGTCAGAACTAAAAGTGGACATATTAGAAGATGAATTTAGAATAAAATCTGACAGTGAATCGGAATCTGAACCTGAAATAACGCATAATGATAAAACTTATAATGACATGAAAACAGAAcgatttccaaaaataaatgaaaaagaatttaatgatttattgcaagaaataagtaatattgatAATGCTTTAGATAAAGAGAAGatgaatttgaatattttaaatgaattagaTGATAGTACAGATGACTTTAATGCATTAGAAAATCCAGCAAAGAGGGTTACTAGAACATACTCGAACAGGAAATTAGTTAACGGGTATCAAGGGAAATTCGGCCTTAATGCTGGTAACGCGAAGTGCAAATCAGTGGATGTCTGTAGCGAATTTTTAACATTCAAGAAAAAGAAaccaattaaaatgttttataaatataaatatacatgtccattatgtaacaaatattttgtttcggcttatcatttaaaaagacatgttttaaaacatttaactaAAAAAGTACAATGTAAAATGTGTAAAAAGAAATTCATATCGAAATTTTACTTATATGAgcatgtaaaaatgatacatttacAGAAGAAAAACGAATTCGTTCCATGCATGACTTGTGGCAGAACATTTACTGACGAAGACAAGCTTGCTTTACATGAAAAAACTCATGTTGCCAAGCAATGTTTACTGTGCGATAAATTGTTTGCAACACAGAAACATTATGACATTCATATGCAAAGGCATGCAGCGAAACTTAATATTATTCATGAAAGAAAAGCACAAACATGTAGCTTTTGCGAGAAGGAATATTCAGACGACAACTTACTCtctttacatgtaaataaagtacatttacaaataaagcCCTTTGCCTGTGATATGTGCGACAAACAATTCTACACAGAAGACGACATGAATAGTCACAAGATAGTGCATAGTTTGTTCTCAAAGGAAGTATGTCAGTTTTGTAATAAAGTGCTCAAATCAAGAAGAGATTTGGTTATTCATGTCAGAAGACACATAGGTGTAAAGCCAAACCACTGTCAAGTGTGTGGACAATCATTCTATTCTGAATTAGCCATGAAACACCATATGTTGAAGTGTCATGGTGGTAGATACCCTTGTAAAATGTGCAAAACTGTGTTTGCAAGCAAAACTGGACTTAAGAATCACATGGATTTAGTACATAGTGTTTTTTAG
- Protein Sequence
- MDEEFETKYGKTYSNAQQNITIKPRNCNEMDSNTISPTKEESLTTKKAVELLLAGTLKYKVCRYCLTVTSSLSELDQILHVAGKGTLHKITIRDMVASFYPFKVVDDPNLPNKICNKCLNQTMRAYFFAQQCEQTERALHNCFDDIYDKLEKLDPLERPKKRGRQKQNPNHNVIHAEHENVIDYAEPIINLINTGSVLLDNDSEEAEIDKLKCPRCWLVLPNLESLLNHEKMHPKTMWYHCQACGNSYAKKTHLNRHIKKVHILGDDVSLPANNNQGFQCMECGNSCENYNQHLQHIEKHKFKMVLDYLVNKKMDKLCAVCLDKSVKMVDLEKTVCLHGGYPEISGNKSLYNILGSTIPEMNFQYNYTGTKICEKCLNHALISYIFIHRTYSVRNRLSTCVSLFLENLSKINEENGNVFVEISQDIILPIREQNNFDEYLDYDETDEVDESELKVDILEDEFRIKSDSESESEPEITHNDKTYNDMKTERFPKINEKEFNDLLQEISNIDNALDKEKMNLNILNELDDSTDDFNALENPAKRVTRTYSNRKLVNGYQGKFGLNAGNAKCKSVDVCSEFLTFKKKKPIKMFYKYKYTCPLCNKYFVSAYHLKRHVLKHLTKKVQCKMCKKKFISKFYLYEHVKMIHLQKKNEFVPCMTCGRTFTDEDKLALHEKTHVAKQCLLCDKLFATQKHYDIHMQRHAAKLNIIHERKAQTCSFCEKEYSDDNLLSLHVNKVHLQIKPFACDMCDKQFYTEDDMNSHKIVHSLFSKEVCQFCNKVLKSRRDLVIHVRRHIGVKPNHCQVCGQSFYSELAMKHHMLKCHGGRYPCKMCKTVFASKTGLKNHMDLVHSVF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -