Zpyr038376.1
Basic Information
- Insect
- Zeuzera pyrina
- Gene Symbol
- -
- Assembly
- GCA_907165235.1
- Location
- OU015644.1:6070520-6072271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00036 0.046 15.5 2.2 1 23 9 31 9 31 0.96 2 16 0.021 2.6 10.0 0.1 2 21 59 78 58 81 0.87 3 16 0.018 2.3 10.1 0.5 1 23 101 124 101 124 0.95 4 16 0.0077 0.97 11.3 1.1 1 23 129 152 129 152 0.91 5 16 4.9e-05 0.0062 18.2 0.9 1 23 157 180 157 180 0.98 6 16 0.00075 0.094 14.5 1.5 2 23 183 205 183 205 0.97 7 16 0.051 6.4 8.7 1.6 2 21 212 231 211 232 0.93 8 16 0.00071 0.089 14.6 0.5 1 23 288 311 288 311 0.96 9 16 0.052 6.5 8.7 1.7 3 23 340 361 338 361 0.95 10 16 0.29 36 6.4 0.0 2 23 384 407 383 407 0.94 11 16 3.4e-05 0.0043 18.7 0.8 3 23 414 435 413 435 0.94 12 16 0.0016 0.21 13.4 3.9 2 23 440 462 439 462 0.93 13 16 0.00055 0.069 14.9 3.2 1 23 467 490 467 490 0.97 14 16 3e-06 0.00038 22.0 5.2 1 23 494 517 494 517 0.98 15 16 0.00036 0.045 15.5 1.1 2 23 524 545 523 545 0.96 16 16 2.9e-06 0.00036 22.1 0.4 1 23 551 573 551 573 0.98
Sequence Information
- Coding Sequence
- ATGCCTTTCAAATGGCGAGGGAGGTATTTGTGTTTTTACTGCGGAAAAAGCTACACGGAATATCCGGAATTCAAAAAACATACTAAATCACACGGATTATGTTCTACGAAGGATTATTCTCTGAAGATAATCAAAGGAAACCACATAGAGATCAAAGTCGATGTATCGGAGATAACTTGTGATATATGTAATGAATCGTTCAACAATTTCTATGAAATAGTCGATCATTTGGTCGGAAAACACAACATGGAGTACGATAAGAGAGTCGACATTCCGTTCCAAGAATACAGACTTGTCGATTTTCGATGTTTGTTTTGCGAAGAACAGTTCTCTTACTTTGGTTACTTAGTTAACCACGTAAATCTTGCCCACCCTCAAAACAGCTTTATTTGCGACGACTGTGGTGCTACTTTTAACAAGAAAAGAGATCTAGCGTTCCATTTTAGAAATTTCCATCGTAGGGGAGGGTACCCTTGCGAGGAATGCTCGAACGTTTTCGAAACTCAAAGAATGCTACGCTCTCATCAAAAGACATATCATTTTAGAAAATGCAAATCATGTACTTTAACGTTCGCGTCTCACGCTCTCCTGCAAAAACATATTCAAATTGATCATCCCGATGACGGCTCATTGAAGTGTACTTATTGCACGAAACAGCTGCATTCGTCTCAAGGACTTAAACAACACATTAGTAAATGTAAAGTGAAAATAGTGACCCAGGGCGCTTCTCCCACTGACAACATCTTCCTAACGGACACCAGCTTAGTACCGACGAAAAAACAGAACGTCAAACAGATCCGAAAGAACATACAATTAGTTCTGAACATGTCCACTGCGTTACCGTTCAAATTTTTTGCCAAATACTCTTGTTTTTACTGCTCTAAACCATTCGTAGAGTTTGATGACCTCAAaagtcatacaataatagaacATCCTATATGCGACTTAAAATCTAAATCCATGAAAAAATGTAAAGGGGAAAGGATATCTGTTAAAATTGATATTTCATCTTTAGCTTGTAAGGTTTGCTGTCAATGTTTCAATGATTTAGATGCGCTAATAGACCACTTAATAACAAAACATCAGGCCGATTATGACACGTCAGTGACCGGTTGTCTGGAGCCTTACCGAATTATCAAAGACAACATCCCTTGTCCTGTATGTCCAGATAAAGTCTTTAGATATTTCGGTATATTATTACGGCATATAAATTCGGAACATAGCAACAATAACAGAATATGTGATTTTTGTGGTCGCTGCTTCAAAAATGTGGCAAATTTGAAAGTACACATATCTTACGCTCACACCGGAGCATGCGAATGTGAAGTGTGTGGATTGAAATTCAAAAATCAGTGGTGTCTCGCTCGTCATAAAGCGAAAAAACACAACGCTAAGGACTACCAGTGCCCCAAATGCTCCGAAATGTTTCAGTCACAATACCATAAACAGAAGCATTTAATTAAAGTTCACGACGTAGGCCATAAATGTACCTATTGCGGAAAAATGTTCACTAGAAATTCGTTCATGAAAGACCATATACGTCGGACGCATTTGAAAGAGAAAAATGTGCCTTGCTCTGTCTGCAACGAAAGGTTCTTCGACAACCATCTACTTAAAATGCATATGGTCAAACATGAAGGCGAAAGGAAATTCACTTGTGACGTTTGCGGCAAGGCTTTCCTTAGAAGGAGCAATTTAAGTTCTCATATGGAAATGCACAAAAAATATGGTCATATACAGttacagttataa
- Protein Sequence
- MPFKWRGRYLCFYCGKSYTEYPEFKKHTKSHGLCSTKDYSLKIIKGNHIEIKVDVSEITCDICNESFNNFYEIVDHLVGKHNMEYDKRVDIPFQEYRLVDFRCLFCEEQFSYFGYLVNHVNLAHPQNSFICDDCGATFNKKRDLAFHFRNFHRRGGYPCEECSNVFETQRMLRSHQKTYHFRKCKSCTLTFASHALLQKHIQIDHPDDGSLKCTYCTKQLHSSQGLKQHISKCKVKIVTQGASPTDNIFLTDTSLVPTKKQNVKQIRKNIQLVLNMSTALPFKFFAKYSCFYCSKPFVEFDDLKSHTIIEHPICDLKSKSMKKCKGERISVKIDISSLACKVCCQCFNDLDALIDHLITKHQADYDTSVTGCLEPYRIIKDNIPCPVCPDKVFRYFGILLRHINSEHSNNNRICDFCGRCFKNVANLKVHISYAHTGACECEVCGLKFKNQWCLARHKAKKHNAKDYQCPKCSEMFQSQYHKQKHLIKVHDVGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNERFFDNHLLKMHMVKHEGERKFTCDVCGKAFLRRSNLSSHMEMHKKYGHIQLQL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -