Zpyr038374.3
Basic Information
- Insect
- Zeuzera pyrina
- Gene Symbol
- -
- Assembly
- GCA_907165235.1
- Location
- OU015644.1:6065843-6070343[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.89 1.1e+02 4.8 0.4 2 23 37 59 36 59 0.90 2 22 0.0023 0.29 13.0 1.1 3 23 83 104 81 104 0.95 3 22 0.01 1.3 10.9 0.6 3 23 111 132 109 132 0.92 4 22 0.0039 0.49 12.3 0.9 1 23 137 160 137 160 0.94 5 22 0.0097 1.2 11.0 0.5 2 23 166 188 165 188 0.93 6 22 0.00044 0.055 15.2 2.3 1 21 192 212 192 213 0.96 7 22 0.0075 0.94 11.4 0.2 1 23 249 271 249 271 0.95 8 22 0.42 53 5.8 0.1 3 23 300 321 298 321 0.89 9 22 0.0047 0.59 12.0 0.6 2 23 342 364 341 364 0.94 10 22 0.054 6.8 8.7 3.0 3 23 371 392 369 392 0.92 11 22 0.00052 0.065 15.0 2.0 1 23 397 420 397 420 0.96 12 22 0.0096 1.2 11.0 1.7 2 23 423 445 422 445 0.96 13 22 0.26 33 6.5 0.6 2 19 450 467 449 469 0.93 14 22 0.00043 0.053 15.3 2.3 1 23 521 544 521 544 0.97 15 22 1.2 1.4e+02 4.5 0.0 2 23 572 594 571 594 0.93 16 22 0.027 3.4 9.6 0.1 1 20 616 635 616 636 0.90 17 22 1.5e-05 0.0019 19.8 0.4 3 23 646 667 644 667 0.94 18 22 7.1e-05 0.009 17.7 0.8 1 23 672 695 672 695 0.96 19 22 0.00042 0.052 15.3 0.5 3 23 702 723 701 723 0.95 20 22 0.00015 0.018 16.7 4.2 1 23 727 750 727 750 0.97 21 22 0.0016 0.2 13.5 0.8 2 23 757 778 756 778 0.96 22 22 0.022 2.8 9.9 1.6 1 23 784 806 784 806 0.96
Sequence Information
- Coding Sequence
- ATGAGAGAACATAGCGCAACGGCACATTCTTACTATAACACCGAAAGTAAAGTAAGCAGAGCCCTTATAGGAGCGACATTTTGCATAAAGCTCGAGATATCGTCGTTGTCTTGTAAAGTGTGCttcaaatattttgataaattcgAGACTGTTGTGGATCATCTTATGGCTACCCATGCAGCCAAATTGGATAAAAGCGTTAAGGATATAGTACAACCATTTCGACTTGCTAAGAATAATATGGCTTGCCCATTTTGCCCGCAGACGTTTGCGTATTTCTGTACTCTTCTTAAACACATGAACAACGAACATTTCTATAAAAAGCATCTTTGCGCGCATTGTGGCAAGGCGTTCGCGAGCGAGGCTGTACTTAGCATTCATGTAACTAGAACGCATGGATCTGATGTGTACAGATGCGAAGAATGCAATTCAGAGTTCAGCTCGTTGCGGAAATTAATAACGCATAGAGGAAAAATGCACGGCGTGAAAAAAATATCTTGCTCAGTCTGCACGGAAAAATTTACATCAGAGTACGAAAAGCAGCGACATTTGATACAAATGCATAACATAGGCCATAAGTGTCCGCACTGCGGCAGGTTGTTTGTTAGGAACTCCTTTATGGCTAATCATATAAGACATAATAAAGGATGCTCAGAGACGGACAGTGCTAGTAAACGCAGACGACGAAATCTGCAAATATTGTTCAACAATACGACAATGATTCCTTTTAAGTGGCGCTCGAAGTATTTGTGTTTTTATTGCGGTGAAGATGTACCAGACTATATCAATCTTCGGAAACATACGAAAGCACACGGCTTATGCACAGACAGAGATCGTTCTATGAGACTAGTAAAAGCGGGCGACGccgaaataaaaattgatgtGTCCGACATTATTTGTGAACTCTGCAAGGAACCGTTTCCGACTTTCGACGAAATAGTCACCCATCTAATTTTCAAACACAAATTACCGTATGACATGAAGGTCAAACTTATGATAACTACGTATCGACTCGTTGATCTTAAATGCCTGCTATGCGAtcaaagtttcaattttttaagcAAACTTATAATGCACGTAAACAACAATCACCCCAATGACTGCTTCTTATGCGATTGTTGCGAGCaaaagttcaataaaaaaagagatttGGATGCGCACATGAGATCTTACCATAACAAAGAAGGATACAATTGCGATAAGTGTAAATTGAGTTTCTCTTCTAAATGGACTTTATACAATCACAAAGCAACAACACATGCTTCCAGATGCAATATTTGCTTTACGACTTTTTCCTCTATCACCAAAAGATTGAGGCATATGAAGATAGAACATTCCGATGCATTACAATGtggattttgttttaaaactttGAGCACTAAACAAGGATTCCTTCGTCACGCTACCGAATGCAGCGCTAATTCTGATACTAAATATTTGGCGATTGAAAATCCACTAGACGACAGAGCAAAGAGACCTACAGCCAAGCAGATAAGAAATAACATAGCTTGCATACTGAATATGTCCACTGCTATGCCTTTCAAATTCTACATGAATAGGTTCAGGTGCTTTTATTGCCCGAAGGACTTCACAGAATGCGATGATCTTAAAGAACATACGCTGATGGAACATCCCCTTTGTGAcgtcaaattaaaaagtatgaGATTACGCAATAGAGAAGACACTGACATAAAAATCGATATATCGACTTTATCTtgtaaaatttgttttgaatCTATACCAAATTTGGAAGTTTTAATAGATCATTTAATATCGGAACATAAAGCACAGTACGATAAATCAATTGACAATTATATGCAATCCTATCGTTTGATAAAAGATAGTTTCGTCTGTCCATTTTGTGGAATCGTTTTTAGGTACTTCAGCATTCTTCTCAAACATGTCAGTTGTATgcatacagaaaataaaataatttgtatgtattgCGGTAAATCGTTTAGAACGAACCCGAGCTTACGTGCTCACGTCACTCGCCGGCACAGAGTCGGGGATTACAAATGTGTAAAATGCCAATTAGAGTTTACGTCAAAAAACGATTTGCAGTCGCATATGGGTCGTGTTCACGGTGCCAAAGTAGTCGACTGTCAAGAATGTTCagagaaattcgtgtcgaattaTTCTATGAAACGTCACATGATAAATGTGCACGCATCAGGTCATAAGTGTACCTATTGTGGGAAATTGTTCACAAGAAACTCTTTCATGGTGAACCACGTTCGACGGACGCATTTGAAAGAGAAGAACGTCGAGTGTTCGTTTTGTCACGAGCGATTTTTCGACGCTGCTCTCCTGAGGATGCATATGGTGAAACACGTAGGCGAGAGGAATTTCCATTGCGATGTTTGCGGGAAGAAATTCCTATGGAAGAAAAACCTAAGAGGCCATATGGCTTCGCATATTAAAAATGCTGTCCAGATTCGAACTTAA
- Protein Sequence
- MREHSATAHSYYNTESKVSRALIGATFCIKLEISSLSCKVCFKYFDKFETVVDHLMATHAAKLDKSVKDIVQPFRLAKNNMACPFCPQTFAYFCTLLKHMNNEHFYKKHLCAHCGKAFASEAVLSIHVTRTHGSDVYRCEECNSEFSSLRKLITHRGKMHGVKKISCSVCTEKFTSEYEKQRHLIQMHNIGHKCPHCGRLFVRNSFMANHIRHNKGCSETDSASKRRRRNLQILFNNTTMIPFKWRSKYLCFYCGEDVPDYINLRKHTKAHGLCTDRDRSMRLVKAGDAEIKIDVSDIICELCKEPFPTFDEIVTHLIFKHKLPYDMKVKLMITTYRLVDLKCLLCDQSFNFLSKLIMHVNNNHPNDCFLCDCCEQKFNKKRDLDAHMRSYHNKEGYNCDKCKLSFSSKWTLYNHKATTHASRCNICFTTFSSITKRLRHMKIEHSDALQCGFCFKTLSTKQGFLRHATECSANSDTKYLAIENPLDDRAKRPTAKQIRNNIACILNMSTAMPFKFYMNRFRCFYCPKDFTECDDLKEHTLMEHPLCDVKLKSMRLRNREDTDIKIDISTLSCKICFESIPNLEVLIDHLISEHKAQYDKSIDNYMQSYRLIKDSFVCPFCGIVFRYFSILLKHVSCMHTENKIICMYCGKSFRTNPSLRAHVTRRHRVGDYKCVKCQLEFTSKNDLQSHMGRVHGAKVVDCQECSEKFVSNYSMKRHMINVHASGHKCTYCGKLFTRNSFMVNHVRRTHLKEKNVECSFCHERFFDAALLRMHMVKHVGERNFHCDVCGKKFLWKKNLRGHMASHIKNAVQIRT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -