Zpyr041228.1
Basic Information
- Insect
- Zeuzera pyrina
- Gene Symbol
- -
- Assembly
- GCA_907165235.1
- Location
- OU015647.1:5717816-5719339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2e-06 0.00028 22.5 2.0 2 23 78 100 77 100 0.94 2 14 0.00015 0.019 16.7 1.6 2 23 108 130 107 130 0.95 3 14 0.02 2.5 10.0 1.5 2 23 137 159 136 159 0.93 4 14 6.1e-08 7.7e-06 27.4 0.8 2 23 167 189 166 189 0.96 5 14 0.0079 0.99 11.3 3.7 2 23 197 219 196 219 0.95 6 14 0.022 2.7 9.9 1.4 1 23 226 249 226 249 0.97 7 14 5.3e-05 0.0066 18.1 2.2 2 23 255 277 254 277 0.96 8 14 7.1e-05 0.0089 17.7 1.6 1 23 292 314 292 315 0.95 9 14 2.7e-06 0.00034 22.2 0.6 3 23 324 345 323 345 0.97 10 14 2.4e-06 0.00031 22.3 1.3 2 23 351 373 351 373 0.97 11 14 0.012 1.5 10.7 3.8 2 23 381 403 380 403 0.97 12 14 4.8e-08 6e-06 27.7 2.9 1 23 409 431 409 431 0.99 13 14 6.8e-05 0.0086 17.8 0.7 1 23 437 460 437 460 0.98 14 14 0.04 5 9.1 0.7 2 20 470 488 469 490 0.94
Sequence Information
- Coding Sequence
- ATGGAAGAGGACGATGATAGAAAAACatctgtaataaaaatagaagtTGAATTCCAAAGAGAAGGAGATAGTGTAGTTAAACAAGAGACTATGGTCTCAAAAGTAAGTAAACAAAATGATCATTCTAATGAAGAAGCAGTTTTAGACAACGAAGATGCATCTCCTACGAACAGCAAAAGGAATCTTGAAATCAATGGCAAAGTCTATGAAAACGGTAAAATAAACAGAATCAAATGTCCAGAATGCGATCACACATTCAAAAATAGAGCGAATCTCAAGCAACATTTAAAGTTTGTGCATTCGACTGAAGATGATGCAGTCGAATGTAATCAGTGCTATCGAACTTTCAAATCCATGGGCCATCTCCGTTCTCACATAAGCTCTGTTCATGCCGAGGACAAGTTAGTCACATGCAAGACCTGCGGCCGGGAGTTCCTGAACAAAAAACGACTGAATAATCATATATTCTACTCTCACCCTGAACCCAACGAGAGAGTTTCCTGTGAAATATGCAAGAAGGTCTTCAAACGAAATTACAATTTGAAAGTTCATATGAGACAGGTCCATCCGTCTGAAGAACTCTCGGTGAAATGTTCAAGCTGTAACAAAACCTTCAAATGCAACATGTTACTGCAACGGCATATAAAATGGAGTCACCCTAACGATGGTATGATGTACCGTTGTCAAATATGCAACAGATTACTGCCCTCGATAGCCTGCTACAAGAAACACATAAGGAATGTTCATTCCGACATTGAAAACAAATGTACGGTGTGCTCTAGGACATTCAAGACATTAAGAACTCTTCAGAGACATGTGAAAAACGTTCACAATGGCGAAAAACCTAAGCAAAAAGAATTTAAACCTGGTAGCTATCCATGCTCCGACTGCGATAGAAAGTTCGCATCAAAGACAGCATTGTATTGGCACTTCGAGCGCCATCACACAAATGACAGAAAAGCCAACTTTTGTACAATCTGTTCTAAAGACTTTTCTGAtaatggaaatttaaaaagacaCCTGGAAACAGTGCATTCACTAGAAACAGCTAAATGTAATATATGCTCGAAGACGTTCAAGTCTCCGCTGAACCTCCAGCGGCATGTCAAAGTCACCCACGCCCCGCCAGAAGCAGCACAGACCTGCAGTATCTGCCAGAAGGAGTTCAAATGTGCCATGCACCTTAGAATCCACGTGAAGACTGTTCATAGTAAGAATGGTTCATTTAAATGCAACGACTGTGACAAGGTGTTTACTTCAAGCAAATATTTGTGGAGACACAGAAAGACGCATACAGATATTAAGGAGTTTACTTGTAGGATCTGTTCAAAGGCGTTTAAAGCGTCTGAGGACGttaaaaagcatataaaaaGGGTACACGTCAGGGAGGCtgatattttatcaaaaacttgttCAACTTGTGGTTCAAGTTTCGCTAACGACATAGACTTCGAACATCATATGGCACATTGCGATGTGGGTAGAAATGTAGTcgttaaaattgaaattgaagaGTCTCAGTAG
- Protein Sequence
- MEEDDDRKTSVIKIEVEFQREGDSVVKQETMVSKVSKQNDHSNEEAVLDNEDASPTNSKRNLEINGKVYENGKINRIKCPECDHTFKNRANLKQHLKFVHSTEDDAVECNQCYRTFKSMGHLRSHISSVHAEDKLVTCKTCGREFLNKKRLNNHIFYSHPEPNERVSCEICKKVFKRNYNLKVHMRQVHPSEELSVKCSSCNKTFKCNMLLQRHIKWSHPNDGMMYRCQICNRLLPSIACYKKHIRNVHSDIENKCTVCSRTFKTLRTLQRHVKNVHNGEKPKQKEFKPGSYPCSDCDRKFASKTALYWHFERHHTNDRKANFCTICSKDFSDNGNLKRHLETVHSLETAKCNICSKTFKSPLNLQRHVKVTHAPPEAAQTCSICQKEFKCAMHLRIHVKTVHSKNGSFKCNDCDKVFTSSKYLWRHRKTHTDIKEFTCRICSKAFKASEDVKKHIKRVHVREADILSKTCSTCGSSFANDIDFEHHMAHCDVGRNVVVKIEIEESQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -