Zpyr037958.2
Basic Information
- Insect
- Zeuzera pyrina
- Gene Symbol
- -
- Assembly
- GCA_907165235.1
- Location
- OU015644.1:3939234-3943277[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.011 1.4 10.9 0.0 2 23 15 37 14 37 0.92 2 27 0.0018 0.23 13.3 0.7 2 23 59 80 58 80 0.96 3 27 0.0015 0.19 13.6 0.0 1 23 84 106 84 106 0.97 4 27 0.006 0.75 11.7 0.7 1 23 111 134 111 134 0.81 5 27 0.0029 0.37 12.6 2.7 2 23 141 163 140 163 0.96 6 27 0.002 0.25 13.2 1.4 1 23 170 193 170 193 0.96 7 27 0.00016 0.02 16.6 3.0 1 23 199 221 199 221 0.99 8 27 5.3 6.7e+02 2.4 0.2 1 9 227 235 227 237 0.89 9 27 0.0055 0.7 11.8 1.0 1 23 294 317 294 317 0.94 10 27 0.79 99 5.0 0.5 3 23 347 368 345 368 0.93 11 27 0.0017 0.22 13.3 0.6 1 23 390 412 390 412 0.99 12 27 0.016 2 10.3 0.3 1 23 416 438 416 438 0.94 13 27 0.011 1.4 10.9 0.4 1 23 443 466 443 466 0.91 14 27 0.0092 1.2 11.1 3.4 1 23 472 495 472 495 0.96 15 27 5.1e-06 0.00065 21.3 0.2 1 23 502 525 502 525 0.98 16 27 9.2e-06 0.0012 20.5 1.2 1 23 531 553 531 553 0.97 17 27 4.3e-06 0.00054 21.5 2.6 1 23 559 581 559 581 0.98 18 27 0.74 93 5.1 0.1 1 12 587 598 587 603 0.82 19 27 0.12 15 7.6 1.6 1 23 722 745 722 745 0.96 20 27 0.94 1.2e+02 4.8 0.2 2 23 770 792 769 792 0.93 21 27 0.0015 0.19 13.6 0.0 1 23 816 838 816 838 0.98 22 27 0.00089 0.11 14.3 0.3 1 23 842 864 842 864 0.98 23 27 0.00021 0.027 16.2 0.2 1 23 869 892 869 892 0.95 24 27 0.0092 1.2 11.1 0.4 2 23 899 921 899 921 0.93 25 27 0.038 4.7 9.2 7.2 1 23 928 951 928 951 0.97 26 27 0.00016 0.02 16.6 4.8 2 23 958 979 957 979 0.96 27 27 6e-05 0.0076 17.9 0.9 1 23 985 1007 985 1007 0.99
Sequence Information
- Coding Sequence
- ATGAAAAAGTATGAACCTATAAAAGTAAACATTTGTGACATTCGATGCAAGCTTTGCGACGTTGCAACAGCAGATTACGATGATTTAAAAAAGCATCTGATAGACGTTCAtaagaaaaaaatcgatttactAAACGATGGCATGCTACCTTTCGAAGTTTCTGCAGAAGGGTTGTACTGCGGTATTTGTAAACAGAAGTATGACGAATTCTCAAATCTAAATTACCACATGAATAGCCATTTTAGCAACTACATTTGCGAGCAGTGCGGTGCGGGCTTTATAACCCCAGTGCGTCTGAAAAATCACGTTATAAGCCACGAGGTGGGATGTTACCCTTGCAACGGCTGCGATAAGGTTTTCAGAACTAGCAGAATCCAAAAAGACCACTACTCAAGAgcacatatgaagatcaaaaagaaCAAGTGTCAGTATTGCTCTGAGTACTTTAGGAACTATTACCAAAAGAAGAAGCATATGAGGGACGTGCATGGAATGGTGATGAAGGAGTTCAAATGTGATCAGTGTTCTAAAGTTTTTATGCTGAGCGGTCAGCTGTCGGCACATAAGAAATACCGGCACTCAAAAACCAAGCGATATTCATGTGATCAGTGCGAGTGGTCGTTTTATTTCAAGTGTGATTTGAAAGACCATATGTTGACGCATACAGGAGAAAAGAAATATCAATGTACAGTTTgTGATGAGACCTCGCCGGCTGAAATTAAACCAGAGCCCGGTACTGAAACGAAAtcaaaaacaagaaaaactGCGAACAAAATACAAAAGGCTAAAGACGCTGAAGAACGAAAAGCAAGGAGAAAAAACGCACAGATTCTCTTAGAGAGCACCAAAATATGTCCGTTTAGATGGCTCAGAAATAAATACTTGTGTTTCTATTGTGATCAATTGTTTTCTGATCCCGCCTGTCTTAGAGACCATAAAAACATAGTACATGGTTATTTTACATCAATACATATTAGGAAGGCACTGATTGGATTAAAGAAATATGAACTTATAAAAGTAGATGTCACTGACACTGATTGCAGACTTTGTGAACAGACAATTAAAGATTTTAACTCACTGAGATCCCATCTTATAAATGAACACAAAAAGCACTTCGATTCAAAATCTAACGACGGAGTCATACCTTTCAAAATTACTAAACAAGAATTTCAATGCGCTGTATGCGTGGAAAAATTCCCCGAGTTCAAATCCCTGAATCAGCACATGAATAAACACTTCCAGAATTTCATTTGTGAGCAATGCGGTTCTGGGTTCATAACACCAGACCGTTTACGAAGTCATTCGTTTTCACACGAAACAGGCTCCTTCAAATGCGAAAGTTGTGATAAGATTTTTAAATCGGCAAATGCGAAAAACGAACACTACGCGCTTGTCCATAAACAAGTTAAACGGCATCGCTGCCCGCAATGTTCGGAGACATTCCGCAATTATTTCCAAAGAAGCAAGCATATATCATCTATTCACGGTTTGAAGTTGAAGGAATTCAAGTGCAACTTATGTCCCAAAGTGTTTACTTCAAGTGGAAAATTGGGTGTTCACATAAATACTGTGCATTTGAAATTGAAACGGCATTCATGCGAAGTATGTGATTGGAAGTTTTATTCTAGGTCAGAGCTGAAGGACCACATGATAAGTCACGGCGGGGAAAGGAAGCATCAGTGTCAAGTCTGTAAGAAGGCGTACGCTAGGAAATATACTTTAAGGGAACATATGAGAATACATAACAATGATAGGCGTTATGTTTGTTCAATTTGTGGCAAAGGATCTTCATTACCATCGGATAAACAGATGACAGCAAAAAGGATCGTGCCGTTATTCCAAGTGGCGTATGACCGCAGCTTGTGTAAACCTCTTGGAACTGTCTTGGACTTCAGTAAATTACGCCAAAGTACTAAGGAaagcaaacaaaaaaatattagtgtcGCGTCGAATTACTGGCCGGAAAGTTCACGAGAATTTACGCCTTCTCGTAGCACATCACCCGTGTCCCTTGGTAAAGATTCACCGTTAACTACCCCGAAAGTAACCAGAGTTTTCATGCAATCAGAGGCTGAAACGAAAAAACAGCCGGATTACAGACAAAATGCTCTCACCGTCTTCGAATTCTCGACTGTATATCCTTTCGTATATGGCAACAACAAATTCAAATGTTTCGTATGCTCGCAACAGTTTCTAGAAACTTCTCTTCTGAGACAACATATGAAGGAAAGCCACACTTTTGCGCCTTTGAAGAGACTAGTTAATAATCGTCGTGAAAATGTGCTGAAGGTGGATGTTAGTGAGATGACGTGTAAGCTTTGTCCCTTGAGACCGCAGAATTTATCCGAGCTAAAGATGCATTTAAGGGAAGTtcacaacaaaaaaattgatcCAGATCTCCAGGATAACATGATACCATTCAAATTGGACGGATGCGATGAATCTTATGTATGCGTTATATGCGAGAAACCTTTCATAAAAGTACGCCTTCTCGTTATTCATATGAGCGTTCATTTCAACAATTACAGCTGCGAAATGTGTGGCTCAGGATTCATGACGCTCAGGCTCCTAAAAAAACATTTGGAGGTACACGAGAACGGAAACTTCCCTTGTGACAAATGCGACAAAGTTTTCTCCACTCCATACAAAAGAGCTTTACACGTTCGTGGAGTGCATTTAAAACAGTTCCCAAGGAGGTGTCCTATGTGTCCAGAGAGGTTCAATTCGAACTACAAAAGGACTATTCACCTTCAAGATGTGCATAATCAGCGAACTAGGGTGCATAAATGTGAAACTTGCGGTCGTGCTTTTAACTTGAAGTACCATCTTACATGTCATACGCGATCCGTTCATCTGCAAGAACGTAATCAACAGTGCGATGTTTGTCATCAAAGGTTCTGTAGCAAGGAGACGTTAAAGAGACATATGGTCATTCACACACAggagaaaaattataaatgccaAGTCTGCGGAATGGCATTTTTGCGAAGAAAAAATCTAAAAGACCATTTACGTTTGCACgacattatataa
- Protein Sequence
- MKKYEPIKVNICDIRCKLCDVATADYDDLKKHLIDVHKKKIDLLNDGMLPFEVSAEGLYCGICKQKYDEFSNLNYHMNSHFSNYICEQCGAGFITPVRLKNHVISHEVGCYPCNGCDKVFRTSRIQKDHYSRAHMKIKKNKCQYCSEYFRNYYQKKKHMRDVHGMVMKEFKCDQCSKVFMLSGQLSAHKKYRHSKTKRYSCDQCEWSFYFKCDLKDHMLTHTGEKKYQCTVCDETSPAEIKPEPGTETKSKTRKTANKIQKAKDAEERKARRKNAQILLESTKICPFRWLRNKYLCFYCDQLFSDPACLRDHKNIVHGYFTSIHIRKALIGLKKYELIKVDVTDTDCRLCEQTIKDFNSLRSHLINEHKKHFDSKSNDGVIPFKITKQEFQCAVCVEKFPEFKSLNQHMNKHFQNFICEQCGSGFITPDRLRSHSFSHETGSFKCESCDKIFKSANAKNEHYALVHKQVKRHRCPQCSETFRNYFQRSKHISSIHGLKLKEFKCNLCPKVFTSSGKLGVHINTVHLKLKRHSCEVCDWKFYSRSELKDHMISHGGERKHQCQVCKKAYARKYTLREHMRIHNNDRRYVCSICGKGSSLPSDKQMTAKRIVPLFQVAYDRSLCKPLGTVLDFSKLRQSTKESKQKNISVASNYWPESSREFTPSRSTSPVSLGKDSPLTTPKVTRVFMQSEAETKKQPDYRQNALTVFEFSTVYPFVYGNNKFKCFVCSQQFLETSLLRQHMKESHTFAPLKRLVNNRRENVLKVDVSEMTCKLCPLRPQNLSELKMHLREVHNKKIDPDLQDNMIPFKLDGCDESYVCVICEKPFIKVRLLVIHMSVHFNNYSCEMCGSGFMTLRLLKKHLEVHENGNFPCDKCDKVFSTPYKRALHVRGVHLKQFPRRCPMCPERFNSNYKRTIHLQDVHNQRTRVHKCETCGRAFNLKYHLTCHTRSVHLQERNQQCDVCHQRFCSKETLKRHMVIHTQEKNYKCQVCGMAFLRRKNLKDHLRLHDII*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -