Basic Information

Gene Symbol
JARID2
Assembly
GCA_907165235.1
Location
OU015621.1:21413415-21429533[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-20 6.4e-17 63.0 0.1 6 89 706 787 702 787 0.92

Sequence Information

Coding Sequence
ATGACGACAAAGAAAAATTGGGCAGCGCAAAGGAAATTTGCTCAGGGCGCGTCACAACCTTTGCATTTAAGCTCTTCATCATTTGATAAACATAAAAACGAATCTCAACAAACTAAGGAAGAACAGGTGTTCCACAATAACATGCCTGCAAGTCAGCTACTGGACACAATAGCATTTCAAAACATACACCGTCACATACAACCTGTTGTCTTACTACAAAGACTTGATACAGAGACGGTGGCCAAACCTGATTGTAACCAACCAAAACAGAGAAAGAAGCAGTCTGCTAGTTCTGTAAgaaagaatgtaaaaaataagacTTTGAGCACCAACTTAAGTGATGAGGCAGATGAAGAAGACCGGCCTCTAAAGTTTTTAAAGGgcCTCCGAGTAGCCCGGAAAAATCTAAAGAGGAGAGCTAGTGTTCCAGTGTTGGCACCGCCAAAGAAATCGCCTAGGCTGTCTTCATTGTCTAATAAAGTTAAAGGAAAGTCCAGGGTAAGGGCAGCTGGATTAAATAAAAAGAGGCAAAAGGAGAGAAGAGCTCCACAAGATTTATATGAGTTTCAGCCTTCTGACTGCTCAGTATCTATAGAGGCATTGCCTCTATATTTAAGTAAGAAACGAGAGGAGTTCAAAAAAAACCAAGGAAATTCCGATGGGGTTGCACAGGAATCATTTTCCTCTTTTGCTTCTATATCTAAGTTGACTGGGCAGAGCTTCTTAGAACATTGGTTGAGCTCAGTACAGAGCTCTGAAAATAGCCAATCAATACAATGTTTCTCACGCAATTTACATACCGTTCGTTCAGTGATGGATGCTGGAGAAGAAAATCTAAACAGCAGATGCCGTGCTTGTCAGCACTGTTCTAGAGTTGATAAGTTGCTTGAACTCAAAACACGTCTAGAACAACCAGAAATTATTGATATTACTGAGGAAGAGACACCAGAACATAACATTAGTCGTCCAACAGCGAGTAGCGGTGGCGAAGATCGCCAACTATATCTGGATGTCCTATCCCCTGATAGCGCTCATATTGTGCGGGTTACTCGTGCTCAAATCGCACATAGTGAGAAGAAAATTGTTCACGCACGCCTAGTGCCTAAATCAATGGTTTCTCCCGGTGAAGTGAATTTAATTGAACATGAGGCCTTGTTAGACCAATTTTTGATGGATCTGACAGAGCCATTCAAATCAGACCAAACTAAAGATACCTACACTGAGCAATTCAATAAGGATATGCAATTTGTGACAAAGAACGAAGTTGTTGACTTAGACAATGTATCATCTGGACCAACACCAGCTGAAGAGTCTTCATTTTCTGCTATGGAAGGATCCAAAGTGCCTACAATCATAACTTTTGAAGAATCTGACATGAATCCCGATGACTCTAAATCAAAGACTCAAGCGACAGTGCATACAACTTCCGATGTAACTACAACTGGAACAACCATTGCAATTCCCGAATGTCTTGAAACACCTGCTACTGTAAGGTCTGAAACGCCTTCCGTTATTGCACCTGTAAATGCTGTGAAATCATTAACTATTGCAGCTGAAACATCTGAAAATGTAACAATACAAACTCCTTCAGTGCTAAAATCAGCAGCACCTTCAATTAACGTAGAGGCGGGAACTTCGACTGGAATATCTTCCATTATTTCGTCTGTACCAACTGAAGTAAATTCCCATACATTTTCCCCTGTAACCCTGAACCCTGTAACAACATCAAACAAACAACCCATAGCAGTCAAGACACGACAAAACAGAAAAGCGAAACCACGTCTTATCCAGAACAAGCCAAGGACACGTGCTCGTTTAAAGACAAGAGCACAAACAAAAGGGGTGAACCAGTCAACTTCACCATCCCAAGAAGATTCTTTTAATAATACGGGACTTGTAGATGCACCCATCTTTTACCCCAGTGAAGAGGAATTTGCGgaTCCCATTACCTATTTCAAGAAAATCATGCCGGAAGCTGCTAAGTTTGGCATATGTAAAGTTGTTGCACCAAATGATTTTAAACCCAAATGTAACCTAAAACAGGACATTAGGTTTAATGTTACGAACCAATACACATCGCGTTTGTATAACAGATGGGGACCTGCCTCCAGAGAAATGTGTGCCATAAAGGCATATGTTTCCACACAAAATGTGGTGTTCGAAAGAGCGCCTTTGCTGGAAGGTGTTGAAGTAAATCTACCCAGACTCTATCATCTCGTCCAACATATGGGGGGTCTGAAAAAAgtaatagaaaagaaaaagtGGGGTCGGGTAGCTGAAGAAATGAAAGTGGCATCAAGTGGccgaaatatagaaaaaaaactgGACCAGGTCTATGTAAAATACCTGCTCCCGTACGACACACTCAATAATCAGGAACGACAGCAGATACTGTCGAAAGTGGAAAAATGCTGGTCGAAGAAGAACGATAAGATGATGGATCGTGCTATGAAACCTCTCCATCGACAAAGGCGACTGCTAGGCGAATCTGAATCGTCTGAAGATGATAGTGAGGACGACGAAGTGAGTGGAGCGCTGATGGAGGCAGAGGACTGCGTGGTACAGGGCAGGCGTATGTACCTGGCCACTTTCCAAAAAATTGCCAACAATGTAATGAAAATGCATTTCGGCGAAGAAACGAAGCCATCGGCGCAAACCGTGGAACGTGTATACTGGGATTTAGTGCTTCTGGGCAACGAACATGTTTGTGTGAATTGCGCTTCCATAGACACTGGCGCAGAAGGGTTCGGTTTTGTGACAAACAAGGACGAACCCTATGGCAATCATCCGTggaatttaaaaATGTTAAACGAAAATACTGGTAACGTTTTACGGAATCTAGGATCAGTACTGGGATTGACAATGCCTACATTACATTTAGCAATGGTTTTTAGTACTTACTGTTGGCACAGTGATCCGCATGGTTTACCCTGGATGGAATACATGCACTCGGGTCCTAGTAAAATATGgtatgGCATTCCCGGCGAACAAAGTGCTAACTTCAGGAAAGCTGTGGAAGTTTTATGCCCATCATATTGTCAAAACAAGTCCATTTGGTTGCCAAGTGATATTATGATGGTACCACCGAATTTATTAATTGATCACAAAGTGTCATTATCACGAATAGAACAAAACCCCGGAGAATTTATAATTGTGTTCCCtaaggcGTACTCTTGCTCGATCGCTACTGGTTTGACGTTGTCGGAAAGTGTGTATTTCGCAACGGAATCTTGGCTGGACAATGTTCAGCAGGATTTTCAAGAGGCAGTGCAAAGCTGTGAACCCACAATGTTCGCATTGGAGCAACTTCTAATTGCAGTGCGAAATGACAAGCACATACCAAACGTAGTGATAAACAAAATTCACGTAGCGCTTTGCTCAATTATTGACGCAGAGCTACAACATCGGCTCGCCATTGCCGAGCGCGGTGTACCGTGCCGTGCTCGAAGTGCAGCCGAAAAACGACCGACAGACGCGTGGAACGTACGCGGTGACGAGTGCGACGTATGCAGGtccactttgtacttgtctaaggTGATTATAACTAAAAAAGTGTCGATATGCCTGAAGGATGCCATCCACATGCTAGACCGGTTAAGCTCACAACAGAAAAAAGATGTCTCGACCTTCGAGTTAGTAACTGTGTTTTCCGCACAAGAATTGCGTGAAATTGTAAActctataagaaaataa
Protein Sequence
MTTKKNWAAQRKFAQGASQPLHLSSSSFDKHKNESQQTKEEQVFHNNMPASQLLDTIAFQNIHRHIQPVVLLQRLDTETVAKPDCNQPKQRKKQSASSVRKNVKNKTLSTNLSDEADEEDRPLKFLKGLRVARKNLKRRASVPVLAPPKKSPRLSSLSNKVKGKSRVRAAGLNKKRQKERRAPQDLYEFQPSDCSVSIEALPLYLSKKREEFKKNQGNSDGVAQESFSSFASISKLTGQSFLEHWLSSVQSSENSQSIQCFSRNLHTVRSVMDAGEENLNSRCRACQHCSRVDKLLELKTRLEQPEIIDITEEETPEHNISRPTASSGGEDRQLYLDVLSPDSAHIVRVTRAQIAHSEKKIVHARLVPKSMVSPGEVNLIEHEALLDQFLMDLTEPFKSDQTKDTYTEQFNKDMQFVTKNEVVDLDNVSSGPTPAEESSFSAMEGSKVPTIITFEESDMNPDDSKSKTQATVHTTSDVTTTGTTIAIPECLETPATVRSETPSVIAPVNAVKSLTIAAETSENVTIQTPSVLKSAAPSINVEAGTSTGISSIISSVPTEVNSHTFSPVTLNPVTTSNKQPIAVKTRQNRKAKPRLIQNKPRTRARLKTRAQTKGVNQSTSPSQEDSFNNTGLVDAPIFYPSEEEFADPITYFKKIMPEAAKFGICKVVAPNDFKPKCNLKQDIRFNVTNQYTSRLYNRWGPASREMCAIKAYVSTQNVVFERAPLLEGVEVNLPRLYHLVQHMGGLKKVIEKKKWGRVAEEMKVASSGRNIEKKLDQVYVKYLLPYDTLNNQERQQILSKVEKCWSKKNDKMMDRAMKPLHRQRRLLGESESSEDDSEDDEVSGALMEAEDCVVQGRRMYLATFQKIANNVMKMHFGEETKPSAQTVERVYWDLVLLGNEHVCVNCASIDTGAEGFGFVTNKDEPYGNHPWNLKMLNENTGNVLRNLGSVLGLTMPTLHLAMVFSTYCWHSDPHGLPWMEYMHSGPSKIWYGIPGEQSANFRKAVEVLCPSYCQNKSIWLPSDIMMVPPNLLIDHKVSLSRIEQNPGEFIIVFPKAYSCSIATGLTLSESVYFATESWLDNVQQDFQEAVQSCEPTMFALEQLLIAVRNDKHIPNVVINKIHVALCSIIDAELQHRLAIAERGVPCRARSAAEKRPTDAWNVRGDECDVCRSTLYLSKVIITKKVSICLKDAIHMLDRLSSQQKKDVSTFELVTVFSAQELREIVNSIRK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-