Ztau001015.2
Basic Information
- Insect
- Zeugodacus tau
- Gene Symbol
- -
- Assembly
- GCA_031772095.1
- Location
- CM062649.1:5513605-5516629[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.089 8.8 7.7 0.5 1 23 544 567 544 567 0.93 2 11 5.1 5e+02 2.1 1.9 1 21 601 623 601 625 0.61 3 11 6.9e-05 0.0068 17.5 0.7 2 23 632 653 631 653 0.96 4 11 0.0005 0.049 14.7 0.7 1 23 659 682 659 682 0.89 5 11 0.0068 0.68 11.2 2.7 2 23 690 712 689 712 0.95 6 11 1.3e-05 0.0012 19.8 2.4 2 23 722 744 721 744 0.95 7 11 9.9e-06 0.00098 20.1 2.0 1 23 767 789 767 789 0.98 8 11 0.005 0.5 11.6 4.4 1 19 797 815 797 820 0.93 9 11 2.1e-06 0.0002 22.3 0.5 1 23 826 848 826 848 0.99 10 11 2.9e-05 0.0028 18.7 1.0 1 23 855 877 855 877 0.98 11 11 0.00035 0.034 15.2 4.9 1 23 882 905 882 905 0.97
Sequence Information
- Coding Sequence
- ATGGGTTGCAGCGTGTACTGTCGcacctgtgcagtacctcctaGGGATTTAGCGGATGGGATGATCGACATTTTTGCAAACACGAAAATTATTGCACTTTTGAGTACTATAAAGGAGTGGAAATTGGATATTACGCAGGACGATGGACTGTCGAAGTGTATTTGTAAGCCGTGCGAATTGGCGCTAATTAAGATTGATACATTCCGATTGCAAGCGTTGAGAGCTAAAGAATATTTACAAAAGCGACTTCAATCGTTAGAGACAACTACTGTGGACGGTGAAGCAATTAACGGCAATGAAAATGACCttcatattgaaataaattgtggTGGAGTGGAGATGCATAACAGGGAAGCCTTACCTattcaaatttgtaaaaatacaattaatatatttaatgaaaatgagaAAGTGAGCGAGAAAGAGCAATCAAACAATATGCAATCAGGTTTAAGTGCAGTTATTGAAGAAACGGGTGAGTTATCGTTTGATTCGAATATTGAGTCTAGCAGACCACTCGAATTTCAGGTAATACTAATTGAAGAGGAAGAGAAATTGACATCACAGTGGATAAATGAAGACGAAAATGCTGGAGAGAAGAGAATTCAACCATTTATGAGGGGGGGAAATGAATATGAGGAGCTTAACAATAATGACAATAAAAGTTTATCAGAGGTAGCTACAGAATTGCATCCAATAAATATGCACATTTTCACCAAACCGACAAAAAAGAAATCAACTCACGGTATacccaatgaaaaaaaaatgagaagcaaaaaaaatatccaaaaaaggAAACATTATGAAATCACgccaaaaaaaatgttaccaCTTATTGAAAACAACCCACCGGAGACTGTTTCAGGGACACAATTTCAATTGATTCATAAAGATACAATAAAAGACATAGGAcctcaatgtaaaaaattaagtgGCATACCTTTGGAGGATCAAGGGCAAATGAatgatattcaaaaattattaggCAGCAGCAGCATGTCAATTGAGCCACTTAGAGAGTCAAGTACATGCTCGTCCGACGATTTACAATCAGTTCTCATGAATCAATTCACACTTCAAATGATCAATGCAAATGTTAACATCCTTGAAGAAGATTTGCAAATTGATGACTTCGAAACTTTGCTGGCCGCAGTTGATGAGCAAGCCTCTTTAGCATcgataaacaataataaagaaaaatattccagtTCTCTGGAAAACGGAGAAAATATACTAAAAGTAAACAATGAAAATCTGATTGGTTGTAAAAAAAGAATTCTAGCATCAGATATAGGAAAAAGTACCTTGTCAGAGGCTGCTTCATACAGTGATAAAGAAACTAAAGGATTTGTAAGGGAAATAAATGACAAAGGCAAAAATTATGAATCTAAAGTGATAAATTCTACATCACTTAGCCCTTCTAAAAAAGTGTCATATAATGAGGAGTCGACTGGTAATactattcttaaaaataatgcatCTGGCGCTGTTGGCCGTTCAAATAAAGTAACTTCAAGAAGTATGCGTTGCCGCCTTTGTGTATGTAAGGTTTCGGATCAGCCACTTTTCGCTACAAAACAGATGCTCGATGATCATATAGCTTCAGTACACGATGATAAAGAACGACCATATAATTGCCCTCAGTGTACGGCGCGATATCGCACGCGAAGCGGGTGTGTAGCACACATAAACGCCATACACCTAAAAAAGGGGGACAAATGTGAGTTGTGCGATAAAATTGTTGTAGGTGGCGCCGGACAAATGCGTATGCACATCGAACGCAATCACACCCACGGCAACTACACATGTGAGATCTGTCACATAGAGCTAAAGAATATATCACTTTACAATTTCAAGTATCATAAAAGATGGCACAATGAAGATAAATTGTGGAGATGCGAGATATGCGAGAAAGCATTTGTTACGCGAACTCATCTAATAGAGCACAAAGTAACACATACACGTCAAGGAAAGTTTCTTTGTACACGGTGCGGGAAAAgtaCGCGCAGTAAATGGGAGCTGCGTACACACCTCTATGCCATTCATGGCGAAGGAGAAGCGCCATTAAAATGCAACTATTGCGAAGAAAAGTTTACTCAACATGTACAGAAACGAGCTCATCTTGAGCGTTATCATCCCATGGAGTTGGCTAAGCGTATAGTTCCCTGTTCAAAATGTGAAAAACATTTCTCTACAGAGACTAATCTTCAACGGCATATTAAGCAACAGCATAATGAAGCTAAAGCCTATATCGGACTCTCAGATGTCGTGACGACTTCGCCAACACTTTATGAAGGATTTATGTGCGCACATTGCCCTCGTAAATATCGCTCTAAGTATGCCCTCATTAAACATTTAAGAGTGCATGCGGTGATGGCAGATCGGCCATATTCATGTCCTGATTGTGATATGCACTTTAAACACTTCTCAGAATTGGACAGGCATGATTTGCAGCATCATGCTACAGTGCGTCCATACAAATGTGATGAATGTTCCAAAGCTTTCGCTACAAAAACCGCGCTTAAAATTCACCGACAAGTTCACGAAGTAAAGGGCAGAAACTTTCGATGCCCAGAATGTAATCAACGGTTCAAATTTGAGAAATCTTTGAATTTACACATTATTTCGCACAAAACAATGCGCCACAcctgtgaaatttgtaaaaagtcATACATACGACTaacgcaattgaaaacTCACAAAAAGCGATACCATAAGAGAGCCACCGATTCAGAGGAAGAGTAA
- Protein Sequence
- MGCSVYCRTCAVPPRDLADGMIDIFANTKIIALLSTIKEWKLDITQDDGLSKCICKPCELALIKIDTFRLQALRAKEYLQKRLQSLETTTVDGEAINGNENDLHIEINCGGVEMHNREALPIQICKNTINIFNENEKVSEKEQSNNMQSGLSAVIEETGELSFDSNIESSRPLEFQVILIEEEEKLTSQWINEDENAGEKRIQPFMRGGNEYEELNNNDNKSLSEVATELHPINMHIFTKPTKKKSTHGIPNEKKMRSKKNIQKRKHYEITPKKMLPLIENNPPETVSGTQFQLIHKDTIKDIGPQCKKLSGIPLEDQGQMNDIQKLLGSSSMSIEPLRESSTCSSDDLQSVLMNQFTLQMINANVNILEEDLQIDDFETLLAAVDEQASLASINNNKEKYSSSLENGENILKVNNENLIGCKKRILASDIGKSTLSEAASYSDKETKGFVREINDKGKNYESKVINSTSLSPSKKVSYNEESTGNTILKNNASGAVGRSNKVTSRSMRCRLCVCKVSDQPLFATKQMLDDHIASVHDDKERPYNCPQCTARYRTRSGCVAHINAIHLKKGDKCELCDKIVVGGAGQMRMHIERNHTHGNYTCEICHIELKNISLYNFKYHKRWHNEDKLWRCEICEKAFVTRTHLIEHKVTHTRQGKFLCTRCGKSTRSKWELRTHLYAIHGEGEAPLKCNYCEEKFTQHVQKRAHLERYHPMELAKRIVPCSKCEKHFSTETNLQRHIKQQHNEAKAYIGLSDVVTTSPTLYEGFMCAHCPRKYRSKYALIKHLRVHAVMADRPYSCPDCDMHFKHFSELDRHDLQHHATVRPYKCDECSKAFATKTALKIHRQVHEVKGRNFRCPECNQRFKFEKSLNLHIISHKTMRHTCEICKKSYIRLTQLKTHKKRYHKRATDSEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01563122;
- 90% Identity
- iTF_01563122;
- 80% Identity
- -