Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_031772095.1
Location
CM062649.1:5627537-5631745[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.6 3e+03 -0.9 0.1 34 43 203 212 202 214 0.85
2 2 7.6e-15 1.5e-11 44.9 0.2 3 44 653 694 651 696 0.95

Sequence Information

Coding Sequence
ATGAATACTTTAGGTCCCAAAAAGGACGGAAGTCCGAATGTGGAGTTCTTTCAATCTCCAGAGTCTCTACAAGGATTTGAAACAATCCGCTTGTGGTTacagaaaaattgtaaaaaaTATTTGGCAAATAATACCGAAACAATAACAAAGGAATCGCTGGCGCAGTTATTAATACAATTCTTACAGTATGTGGAGGCAAAATTGGGAAAAAATGCACCAGAGCCGCCGGCAACTCGTATCCCGATGCGTTTATTCATGGATTTTAAACCTGGCGGTAGTTTGTGTGTCATCTTTAGTACAATGTTTCGTTTTCGGGCTGAACAACGTGGCAAAAAGTTTGATTTTTCAGTGGGTAAAAACCCACCACGCAAAGATCCAAACATACAATTACTTATTGATATCGAACAAGCGCTTGTCGAGGCAAACCTTTACTGGAttcattacatatacatacggcCGGAAATAAATAAGGAATTGGCTCAGAAATTGAGAGATATTTTAAGTACCAGGCGGGTAGAGATTGTATCCGACGAAGAAGAAGCTACACACACCATATACCCAGTTGTTGATCCACATCCTGACGAATATGCACGACCTGTTTTTAAACGTGGTAATCATGTAATGTTGCATTGGTATTATTTCCCGGAATCCTATGACTCCTGGGCTATAAACTCATTTGATTTACCGGAATATGTGCCAGAAAACCATGAAGTACCGGGAGAAAGGTGCTGGCATGTGTCAGCATCTTGGATTTTAGATCTGGAACAATATAACGAATGGATGGTTGAAGAAGATTATGAAGTAGATGAAACGGGcaaaaagaaaacacacaaacatcGTATGTCTGTTGATGATATAATGTCGTTGGGAGCTGATGAGAAAAAACGAGTCTCGGGCGGAAATAGTGCCGCTACCAAGCAAAAAAGGCGTCGTTCACCTTCTCCAAATACATCCAAGCCTGGCAAACGCAAACGCTCTCCTGCTGTATTACACAAGAAAGCCAGGAATGACGAGGATGATGAAGACTTGACTCGTGATATGGATGATCCCCCGGCAGAGCCAAATGTGCAGGAAGTTGTAAAGTCATCATCCCTACAATCGACGGCTAGTCCAGCACCGGGAGGAAAATCACGTGCAGACAATGACATGATGCCAATAAAAGGCGGAACCATGACCGATTTGGATGATGAAATGACCGGAGGTAGTGCTGCACAAGCTCTTTCCACAGGAGATGGTGAAAATTCTCAAACTGGTAAAACTAGTGATAATAGTAATACCCAAGAGTTTACTTCTTCTGCTAAAGAAGATATGGAGGATAACGTAACCGAACAAACACATCACATCATTGTACCCTCATACTCGGCATGGTTTGATTACAACTCAATTCATGTCATTGAAAAGCGCGCAATGTCGGAATTTTTCAATGccaaaaataaatcgaaaactCCTGAAATTTATATGGCCTATCGCAATTTTATGATTGACACTTACagattaaatcCTACCGAGTACTTAACTAGTACTGCTTGTCGCAGAAACCTAGCCGGAGATGTTTGCGCTATAATGCGCGTACATGCATTCTTAGAGCAATGGGGTCTCATTAATTATCAAATAGACGCAGAATTACGACCAACTCCAATGGGACCACCGCCCACttctcattttcatattttatcagACACGCCTTCTGGTTTGCAATCTTTGAATCCACAAAAAACACAGCAGCCATCTGCAGCAAAAGCTTTACTTGATTTGGATAAACCAAAAATGAACAAAGACGGTAAAGAAGGTTCAATAGAAGGTGATAAACCGTTGCTGTTACCGGgaggaataaatattaaaactgaaACTTTGGAAAATGGTAGCAACACAGGCCAGCAATTTGGTCTGAAACTAGATCAATATGCAAAGAAACCTGCGGCTATGAAAAATAGAACCGCAGCTAGTATGACCCGTGAATGGACAGATCAAGAAACATTGCTTTTACTCGAGGGTCTCGAAATGCATAAGGATGATTGGAATAAAGTTTGTGAACATGTAGGAACTCGTACACAAGATGAGTGCATACTGCATTTTCTCCGTCTACCTATAGAGGACCCTTACCTGGAAGATGATGGAGGATTTTTGGGACCATTAGGATGTCAACCCATACCATTTAGTAAATCTGGCAATCCTATTATGTCGACGGTGGCATTCTTAGCTTCCGTCGTTGATCCTCGTGTAGCAGCAGCTGCAGCAAAGGCTGCCATGGAGGAATTCGCTGCTATAAAGgaCGAAGTACCCGCTACAATAATGGATAATCATATGAAGAACGTGGAGAAAGCATCAGCTGGTGGAAAATTCAATCCATCTTTTGGGTTAGCCAACACTGGCATAGCCGGCACAGGGACTGACAAAGAAGATGACGATGCTAATACAGTAGCCATGCCAGTGAACACAGGTGCGGTAGATGAAGAAATGAAGGATGTTTCGAAAAAAGACGACAATAAAACACATTCAAATGAGGCTAATAAGACAGAGAAGCTAAATAATGAAACAGAATCTGAAAAGAAACCAGAAAATGATTGCAAAaATGGCGCAGAGAGTAAAATTGAAGACACTAATGACACAGATACGACGTCAAAGGATCCTGACATCGTCAAGCAAGAAGTATTCAACGAGGCTAACGTTCAAACCGCTGCAGCTGCAGCATTGGCTTCGGCAGCTGTTAAGGCCAAGCACTTAGCCGCTTTGGAAGAGCGCAAAATCAAATCGTTAGTAGCATTACTCGTGGAGACTcaaatgaagaaattagaaataaaactgCGCCATTTTGAAGAGCTGGAAACAACAATGGAGCGTGAACGCGAGGGGTTAGAGTATCAGCGCCAACAGCTTATAACCGAACGTCAACAATTTCATTTGGAGCAATTAAAAGCTGCAGAATTTCGAGCACGTCAGCAAGCTCATCATCGACTTCAATTAGAACAGCAATGGCAAGGGACTACTGGTGCAAACGCCACAGGCAATGGTCCACTTGCTGGTAATGCAACTCTCGGTGGGGCCAGTAATGCACCACCTACTCAAGGTCACCCAGTAGCGGCTGGTGGCGGCGGCGTAGTCGCTGGTGGCACTATAGCAACAAATGTTAGTAATGTTGGGTCTCAAAGCTCATCTGGGGCTGTGGCTCAAGGTGGAAACACACAACCACCTATCGGAAGCTCCTCACAACCAGCTACAGCTGTACCACTGGGGTTACCTACGCCAACAGCGCCATCTGTACAACAACAACCCCCAACTCCAATGGATACTACAACAACTGCTTCTACAGCCATCCCAACAGCTGCCGTTGAGGGACCTACAATTACTGGACAGACAATTTTGTCACCACCAAGCGGATCAACAGGCATGCCATCTTCTAATGTACAACCGCCAAATGTACAACCAACAGGCGTATCTCCCACAGTACCACCAtcttaa
Protein Sequence
MNTLGPKKDGSPNVEFFQSPESLQGFETIRLWLQKNCKKYLANNTETITKESLAQLLIQFLQYVEAKLGKNAPEPPATRIPMRLFMDFKPGGSLCVIFSTMFRFRAEQRGKKFDFSVGKNPPRKDPNIQLLIDIEQALVEANLYWIHYIYIRPEINKELAQKLRDILSTRRVEIVSDEEEATHTIYPVVDPHPDEYARPVFKRGNHVMLHWYYFPESYDSWAINSFDLPEYVPENHEVPGERCWHVSASWILDLEQYNEWMVEEDYEVDETGKKKTHKHRMSVDDIMSLGADEKKRVSGGNSAATKQKRRRSPSPNTSKPGKRKRSPAVLHKKARNDEDDEDLTRDMDDPPAEPNVQEVVKSSSLQSTASPAPGGKSRADNDMMPIKGGTMTDLDDEMTGGSAAQALSTGDGENSQTGKTSDNSNTQEFTSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMSEFFNAKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAELRPTPMGPPPTSHFHILSDTPSGLQSLNPQKTQQPSAAKALLDLDKPKMNKDGKEGSIEGDKPLLLPGGINIKTETLENGSNTGQQFGLKLDQYAKKPAAMKNRTAASMTREWTDQETLLLLEGLEMHKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDNHMKNVEKASAGGKFNPSFGLANTGIAGTGTDKEDDDANTVAMPVNTGAVDEEMKDVSKKDDNKTHSNEANKTEKLNNETESEKKPENDCKNGAESKIEDTNDTDTTSKDPDIVKQEVFNEANVQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQLEQQWQGTTGANATGNGPLAGNATLGGASNAPPTQGHPVAAGGGGVVAGGTIATNVSNVGSQSSSGAVAQGGNTQPPIGSSSQPATAVPLGLPTPTAPSVQQQPPTPMDTTTTASTAIPTAAVEGPTITGQTILSPPSGSTGMPSSNVQPPNVQPTGVSPTVPPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01189365;
90% Identity
iTF_01562829; iTF_00192021;
80% Identity
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