Basic Information

Insect: Zeugodacus cucurbitae
Gene Symbol: ush
Assembly: GCA_028554725.2
Location: CM053020.1:25704831-25720281[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.042 5.5 8.7 0.6 6 21 268 283 263 288 0.87

2 9 0.00036 0.047 15.2 0.8 1 23 345 367 345 367 0.98

3 9 0.053 7 8.4 0.8 2 20 398 416 398 418 0.92

4 9 0.062 8.2 8.2 2.9 2 21 846 865 845 866 0.93

5 9 0.012 1.5 10.5 0.0 3 21 908 926 906 927 0.91

6 9 0.32 42 5.9 0.1 1 23 999 1021 999 1021 0.93

7 9 0.018 2.4 9.8 1.3 1 23 1027 1049 1027 1049 0.99

8 9 0.0012 0.16 13.5 0.7 1 23 1118 1141 1118 1141 0.96

9 9 0.45 60 5.4 0.4 2 20 1272 1290 1271 1292 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.042	5.5	8.7	0.6	6	21	268	283	263	288	0.87
2	9	0.00036	0.047	15.2	0.8	1	23	345	367	345	367	0.98
3	9	0.053	7	8.4	0.8	2	20	398	416	398	418	0.92
4	9	0.062	8.2	8.2	2.9	2	21	846	865	845	866	0.93
5	9	0.012	1.5	10.5	0.0	3	21	908	926	906	927	0.91
6	9	0.32	42	5.9	0.1	1	23	999	1021	999	1021	0.93
7	9	0.018	2.4	9.8	1.3	1	23	1027	1049	1027	1049	0.99
8	9	0.0012	0.16	13.5	0.7	1	23	1118	1141	1118	1141	0.96
9	9	0.45	60	5.4	0.4	2	20	1272	1290	1271	1292	0.91

Sequence Information

Coding Sequence: ATGGCCAGCAATAATAGCCGCCTGCCCGGTTGCCTGATCGTCAACGGTGCGGCAGCGCAACAACATCGGCGAAATCAATTGCTCAACAACGTTGAACTCGATGCCAAATCTAGTGATTCGAAGACAAAGAACTCTATGGATGAAGATCTAAAAAattccAAAGATCTGAGTCCAGCAGACTTAACAGATGATCAACATCACTTAGAACGTGAAGATCATCGGCTTGAAGAGACTGATATAGAAATGGAAGACGATACTGACACAAGAGAAGGCGACAATCGAATACTCGCTATAAATCCACATCGAATATCGCCGCATAGAAGGGATGAAAACACAATGAGTCGTCCGCCGAGCGTGGCAACATCGAATGGTTCAAATTCCATAGACGCATTTCACAACGCCAATGAGTCCATTGAACACAAAATCGTTTTAAATATAGAACGTGAAAAACTGAAAGATCAAAATGAAATAAGTATCGAATCAAATTCAATGAATTCAAACGACAAACGTGCGGCCAGCAGCAGCCCACACAAGGATGTACTGGCAGGCAATGAGACACCGCCGATGTCCTCACCCACCAGCGTATTGCCAAAGTTGCGCTTGAATGTGCTTTTGGCTTCCGATCCGGCCTTGAAGCCGGATGCCAAAGACCTAAAGGTCTTACATGAAGAAACACAAACGAAAAATCGACTCGCACAATTGCCACCGCCACCGGCGCTTACCAAGCAGGAAGATATGGACATTTTGATGAGTGCGCCGGTTGTTAATGTCGTAGAACCGGCGTTGTTCTTGTGCTTGCCCTGTGGCATACAATTTAGTTCACCATCCACATTGGAAGCGCATCAGTCCTACTATTGCTCGCATCGcAATAAGGATATGGAGACTGATGGTGCTACGTTATCCACAGTAATGGCGGAGAAAACTGGCGCATTGAATGCTAACGCGTCCAACGTGTCAAGTGGCAACATCAATCTCGGCGCCGGCAACAGCGGTGGCGAAAATGTCGCCAAAGCCATCAAGACGGGAAAACAATATGCGTGCACACAATGCTCCTACAGCGCAGACAAGAAGGTCTCACTCAATCGGCACATGCGCATGCATCAAACATCGCCGGCGCACAGCAGTAGCGCGCCGCCGTCAAACGGTGCGGTCGCATTGGATGAGGGTGGTACTAGTCAACAAACGGACCGTTACTGCAGCGATTGTGATATTCGATTCAATAATGTAAAGACGTATCGCGCGCACAAAATGCATTACTGCAGTTCACGCCGTAATGATGGACAACTAACACCCAAGCTGGAGGGAAGCACCGCTAATGTTATTAAACCGCCAGTAGGAGCGGCTGCCATCAGTCCTCAAACGCGCACCAAAACACCGACGCCAGCTATGGTGGCTGCTGCCGCTGCGGCAGCTGCAGCCGCAGCCGCGTCCTTGCAAGCTTCACAGCCACAGCCATTTCTGGCCTTACCCACCAATCCAATATTGATAATACCCTGTTCTTTAATACGGGCCGCCAGCTGGATACCGGGACCACTCTCTTCAGCAACGGCGTCCATTTCAAACCCTGATACCACCTGCTATATGTTGGATAATGGTAATTTGAAGCCATTAGCCACGGCTTTGAATATGAGCGCATTGAATCCTAATGTTACCGCAAATAATAACCCTGTCGGAGCAGCTGCAAGctcaaataatttacaaatccCTACTGTCGAAACTCCACCGGCTCGTCAACCTTCGCAACCCAACAACAGCGAGACGCTTGCCTTGGAGAAAAATACTGGACGTAGTGGTGATCGGAGTGAGACCTCAACACCAAAACGAAAAGATGGTGCGCGCGAATCTGCACCATTGGACCTCTCACTACGTCGTTCACCTACCTCTTATGTCAGCCTGCAACGACAACGTGTTCACTCGACCTCCTCCTATGCAGATGTCGATCAACAACGCATGGATATGGAAACATTACTGGAGGCAAGTAAAGAGAATTTGGCAATGGATGAAAGTGGCACAGTGACACCGGAACAAATCGTTTGCGCGCCCTCACTACCAAACAGTCCCTCGATGAGCCCATCGCCAAAACGACGTGCAATAAGTCCACGAAGCTCTGGTGCCGGCAGCACGTCGTCAATGTCACCTCCGGTAAATGTACCGACTGCCTCACTGGTAGCAGCTGCCGCCGCCAGCAATATGCTTGACCTACCACTGCGTTCAATGTTACCCGCCGATCTGGCGCTGAAACTCTCCGAAAGCAATATTATGAATCCACTACTGGCCAAACAAAACTTTGAGCTGGCGTTAAAGCTCTCGGCTGCCGCTGCAGCTGCTGTAAACAATAGTACACCAACAAATATAGGCAATGGTTCGACACATGCTGAGTTGGCCGCAGCGGCGGTTGCCGCCGCCACCGCGAAGTCCTCGCTACTCGGTATGCCCGGTTTGAGTAACACAGCGTCGGTTGGTAGCAGTGGTAATGTGGGTGGCGGATCCAACGCGGCTGTTCAACCACAAATTTATGTCAAACAAGGTGTCTCCAAATGCAAAGAGTGCAACATTGTATTTTGCAAGTATGAAAATTATCTGGCACACAAGCAACACTACTGTTCGGCGCGCAATCAGGAGGTTGCTGAAGGTGAAGCGAAAGTGACCAACACGTCACCACTTGGAGTCGGTGCCGCAGCGAGTGTTGAAACGACTCCAGTCGCCTATCAGCAACTAATTTGTGCTGCCTGTGGCATCAAATACACATCACTGGACAATTTGCGTGCTCATCAAAATTACTATTGTCCAAAGGGAGGCGGCACGGCCGGCGCAGCTGCATCAACGGCAACCGAAACTGCCCAGTTGCCGTTGACTAAGGATAAATGTGGCAAATGCAAGACAATCCATGAAATCGGTTTACCCTGCCCACCGCCGCCCGCACTCCAGCAATCCCAGAGCAGTGCCCAGCACATCGCTGCGTCATCGACACTTTCGACACCCAATCAAAACATCTATAAATGCCCCGTTTGCGATGTGGTTAGTCTGACGGCCACCGAGAGTCGGAAGCACATGGAAACTCATGGCACCGTTAAGGCATTCCGTTGCAGCATCTGCCGTTATAAGGGCAACACTTTACGTGGAATGCGCACTCACATCCGCATGCATTTCGACAAGAAAGCAACCGATCTCAATGAGGAACACTACATGTCCTGCATACTGGAAGATGAGGGTCTGGAAATTCCTAGCATAGCTTCTACACTGAATCAAGAACAATTGGCACAGCAAATAGCCGcggtacaacaacagcaacaccagtTACAACTACAagctcagcaacaacaacagcagcagcagcagcaacaacaaatattcaatTGCGATCTATGTAATTACTCCTCTTCCTATAAAGGCAATGTGCTGCGTCACATGAAACTGGTGCACCCTCACATCAACATCCATTCACCATCAATTTCACCTGAAGCCAATGACCTGGATGCTGCCGATGGGACTGGCTTAAATGGCGAGAGTGGcACCTTCACCATAAAAAGCGAACCACTCGATCAAGTGCCTAATACCAATCTAACGACTTCGGCACAACTAAtggacaataacaacacaaccaTTTTGGCAGCCACCCTGACAGCACCACCACCGCTGAACAGTCTCGGCGCCGAGCAAATGCCACATATTAAAACGGAACCGTTGGAAATCGGAGGCGACAGCTTACCAGCAACCACATCACGACCAGCGCTCAGCTCACCCGCTATTGGACCACCACCGCCGCTCAATGCTGCCAGCGACGAGAATGCCGGCGTAGCGGCAAATCAGAAATATTGTCAAACTTGTGACATATCCTTCAACTACATGAAGACCTATGTGGCACACAAGCAGTactattgcaaaaacaaattacggAGGCCGGATGCCAGTGAGAGTCCCAGTCCCAATGCTGGTCACATGCCAATGGCCGTAGCATCGCCTAATTCGTTGCTACTCTTGCAGAAGAACAAAGAGAATCTGCAGCAGGAAGCCGCCATTTGA
Protein Sequence: MASNNSRLPGCLIVNGAAAQQHRRNQLLNNVELDAKSSDSKTKNSMDEDLKNSKDLSPADLTDDQHHLEREDHRLEETDIEMEDDTDTREGDNRILAINPHRISPHRRDENTMSRPPSVATSNGSNSIDAFHNANESIEHKIVLNIEREKLKDQNEISIESNSMNSNDKRAASSSPHKDVLAGNETPPMSSPTSVLPKLRLNVLLASDPALKPDAKDLKVLHEETQTKNRLAQLPPPPALTKQEDMDILMSAPVVNVVEPALFLCLPCGIQFSSPSTLEAHQSYYCSHRNKDMETDGATLSTVMAEKTGALNANASNVSSGNINLGAGNSGGENVAKAIKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAHSSSAPPSNGAVALDEGGTSQQTDRYCSDCDIRFNNVKTYRAHKMHYCSSRRNDGQLTPKLEGSTANVIKPPVGAAAISPQTRTKTPTPAMVAAAAAAAAAAAASLQASQPQPFLALPTNPILIIPCSLIRAASWIPGPLSSATASISNPDTTCYMLDNGNLKPLATALNMSALNPNVTANNNPVGAAASSNNLQIPTVETPPARQPSQPNNSETLALEKNTGRSGDRSETSTPKRKDGARESAPLDLSLRRSPTSYVSLQRQRVHSTSSYADVDQQRMDMETLLEASKENLAMDESGTVTPEQIVCAPSLPNSPSMSPSPKRRAISPRSSGAGSTSSMSPPVNVPTASLVAAAAASNMLDLPLRSMLPADLALKLSESNIMNPLLAKQNFELALKLSAAAAAAVNNSTPTNIGNGSTHAELAAAAVAAATAKSSLLGMPGLSNTASVGSSGNVGGGSNAAVQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEVAEGEAKVTNTSPLGVGAAASVETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGTAGAAASTATETAQLPLTKDKCGKCKTIHEIGLPCPPPPALQQSQSSAQHIAASSTLSTPNQNIYKCPVCDVVSLTATESRKHMETHGTVKAFRCSICRYKGNTLRGMRTHIRMHFDKKATDLNEEHYMSCILEDEGLEIPSIASTLNQEQLAQQIAAVQQQQHQLQLQAQQQQQQQQQQQQIFNCDLCNYSSSYKGNVLRHMKLVHPHINIHSPSISPEANDLDAADGTGLNGESGTFTIKSEPLDQVPNTNLTTSAQLMDNNNTTILAATLTAPPPLNSLGAEQMPHIKTEPLEIGGDSLPATTSRPALSSPAIGPPPPLNAASDENAGVAANQKYCQTCDISFNYMKTYVAHKQYYCKNKLRRPDASESPSPNAGHMPMAVASPNSLLLLQKNKENLQQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00191670;
90% Identity: iTF_01564145;
80% Identity: -