Basic Information

Insect: Zeugodacus cucurbitae
Gene Symbol: PRDM1
Assembly: GCA_028554725.2
Location: CM053021.1:58127454-58133663[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.9e-05 0.0051 18.2 2.5 1 23 1008 1030 1008 1030 0.99

2 5 1.2e-05 0.0015 19.9 5.1 1 23 1036 1058 1036 1058 0.98

3 5 2.4e-06 0.00032 22.0 4.3 1 23 1064 1086 1064 1086 0.98

4 5 0.00081 0.11 14.1 2.4 1 23 1092 1114 1092 1114 0.97

5 5 0.00014 0.018 16.5 0.1 1 22 1120 1141 1120 1141 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.9e-05	0.0051	18.2	2.5	1	23	1008	1030	1008	1030	0.99
2	5	1.2e-05	0.0015	19.9	5.1	1	23	1036	1058	1036	1058	0.98
3	5	2.4e-06	0.00032	22.0	4.3	1	23	1064	1086	1064	1086	0.98
4	5	0.00081	0.11	14.1	2.4	1	23	1092	1114	1092	1114	0.97
5	5	0.00014	0.018	16.5	0.1	1	22	1120	1141	1120	1141	0.96

Sequence Information

Coding Sequence: atgaACGTGCAACTAGCACAACAATCAGCAGCACATACCACCAGAAAgcattgcaacagcaacaacagtagtaGTACTAGTATTAGTCGTATTAGCAACAacactcacaacaacaacaacaacaacatgaacacCACCGtcaacacacaacaacagcaacaacagccagCGCACAATCGCACAATGTCCacagtggcggcggcggcgacgaCGTCAACGCTGACACATcgtacacaacaacaaagtgccGCTCTAGTGCCGCCGCCCACCGCCtcgacgacgacgacaacgaCAGCGCCGACGTCAGCGCCCATGCGCAGCGCGCCGCGCAGTCCCTCACCGGACGGCACACAGGATTACGATGTGACGCGCATGCGCGAGGAGGACTTCGAACGGCTGGCCGTTTATATAGTGCCCGATGTGCAATGCGAGCGCGGCATAGCGAATCGGGCGGATCGCACGCTGCCACGCAGCCTAACACTGAAACCATCCATGGTTTTCTCAACGCCAAATGTTAAGACTGAAGGAGTTTGGAGCACTGGTGTGATACCGCGCGGCACACGTTTTGGCCCCTTTGAAGGCGTTCCAACTCCGAATTATCCCAACGATAAGAATAAGGCGCGCTATTTCTGGCGGGTGCAGGAAACACGCCACATAACCTACGGGAACATTAAGATCTTCAAAGATGACGATTTCTACTATTTGGACGGTTCGGATCGTGCGCAAGCGAATTGGATGCGTTACGTCGCCTCCGCCTACAGTTTGTCCGTGATGAATTTGGTGGCATGCCAACATCAGGAGAATATCTATTTCTATACGACACGTGACATTATGCCCAATGAAGAGTTGATGGTGTGGTATTGTAAGGATTTCGCACGACGGCTTGGTTACGATGTCGATCCGGAGCGCACGATCTTTGGCGCTTGCAAGCAGGCTGTGTGTGACGATGATGAGGACGCCGAGGCGGATGCCGAAGATGAAGATGTGTCGAGTAATGCCACAGCGACGAGCCCATTACTGTTGAGCCATAAAGCGAAATTGCGTACGAATTCGCCGTACTGCATGCCAGCGCCTGAGATACCACCCGAAGTTGCATACAATCACATCACGTACGTTATGGGACTGCCAATACCACCAATGCCAGCGGTGGCGGGCAATGCGGGTGTAAGTCGACGCTCTATTACGCCTAGTCCGTCGCCACCCAGCTGCCGCGAGAGTAGTGCGAGTCACATGCCACAGCATTTGGTTGGACTGCCACACATACATCACGCGCAGTCCACGCAGCGGCAGTCGAACGCACATCAACATCAACTGCCTGCCGCCACACACCTGCAACACCACCAACACATTCAACAACATCAGACGGTGTTGCATCTCAAGCAAGAGCCTGGCGCGTCGTCGGTAATCGTGCGCGAACGCTCGCCAGCGAGCAGCGATTGTGGCGTGAAGGAGGCCAAGGATGTGGCGGGCTCACCGATACCACACAAAGACACGCACTATGAACATCAGTTGACGCCGAATGATGGTAGCGTGCGTTCGGTGCGCTCGGATGAGGGTTACCACAGCAATGAGTATCATGAGGATGGACTCACGCCACCTGAAGACTCGAGCGATAGCGAAAGCGAGCACAATTATGTTTTGGACTGCTCGAAGAAAGCCATTGCACCGAAAGAGACTGTTATCACGCATCCACAGAAGGCGGCCGTCGCTGCGGCTGTGGCggcagcagctgctgctgcaaacagtaatagcaacaacaatgcggtggttaacaacaacaacacagcgttGACTCCAGCAGTGGTGTCTTCCGCCACCGCCTCTATGGATTGCGGCGGCGACAAGAATGAGTATCGCAAATTCAAGGTGAAAATGCCGCTCAAGTATGAGTTCAAGAATAGCAAATGCGCCATTAAGACTGAGGCCATGTGCCACATTAACAACACAACCAATAGCAATCAAAACACAAGCGACGAACTGCCCACAGTTGGTGCCACATCCAGCGAAGATGATTTGCTGGCCGCCAATGAAGCCACACCCGCCTGCACGTCTTCTACACAGTTGGATGACGACGCGATGGATGTGGATCATATGCCGGGTTCgacgacacaacaacaacatgcttcGAGCACCGTCATCGTAGTAGATCGTAGTCTAAGCAGCGCTAATGGACATGCGACGCGCACCATAGTGCCACTGAATAAGGCATACTACGAAGCTGAGACCACCACACCGCCACCACCCACAGCCACACAATCGGCGTCGGCTGCTAGCGTCGCTTATATGCGTTTCACGCCACCCTCCTCGAGCATACTGGAAACCATATTGACGGGTCAGCATCGTTTGGAGGCCGCAGCTGCTGCAGCGGCCGCTTGTCGACACGCCAACGCAGCCACACCACCACCTTCTTCGCCCACAGAGATGGCTTATTCGTATAAGAAATCACATCGTTATGGCAATGCTGTCAGTCCCGACTCAAGCTCCAATTTAGCGCAGGCGCCCGATATGCATGCTGCGTCGATGCACGATACCGAAATGCTCATTGCTTCGTCACGTGGCAGTCTGAAGGACGACTGTTCGCCACCACCGCCACCGGGTCATCATGTGATATTCTCGCCGGCGCATGTTGGACACAGCGCCTTCGTCTCGGATGGTCATCAAACGCCACCGTACTCAGCATATTCACCATATTCCAGCAGTAGCGTGAATGGTGGCGCGCCGGGTGGTGGACATCCACTCTCACATATGCCCACATCCACGTTCCACTCGCCGCCACATAGCTCACACTCGCCCTTCGATCGCCAGTCGAATGCGTCCAGCGGCTCTACACCCAATCTGCACCTGCTGCAGTCCAGCTCACAGATGCTCATGCAACCATTGCGCATTTCACCACCCAGCAGTCTGAGTCCCGATGGCAACTCGTGTCCGCGCAGTGGCAGTCCACTTAGCCCGAACTCGTTGGCTGCACGCGGCTATCGCTCACTGCCATATCCGTTGAAGAAGAAAGATGGCAAGATGCATTACGAATGCAACGTCTGTTGCAAGACCTTCGGTCAGTTGAGCAATCTGAAAGTGCATCTGCGTACACATTCCGGCGAGCGACCATTCAAATGCAATGTCTGCACGAAGAGCTTCACACAGCTGGCGCACTTGCAGAAGCATCATCTGGTACATACCGGTGAGAAGCCGCATCAGTGCGACATCTGCAAGAAGCGTTTCTCCTCGACGTCGAATTTGAAGACCCATCTGCGTTTGCACAGCGGTCAAAAGCCGTACGCCTGCGATCTGTGTCCACAGAAGTTCACACAGTTCGTGCATCTGAAGCTCCACAAGCGACTGCACACCAACGATCGGCCTTATGTGTGTCAGGGTTGCGATAAGAAGTACATCAGCGCCTCCGGGCTGCGTACGCACTGGAAGACGACGAGCTGCAAGCCCAACGATTTGGAGGAGGAGCTGGCCATGGCCGCAGCGGCGACCTCCGAGTGTTTGGACAAAGACCTGCCTGAGCCCGACTCGCGTGAGGCCTTCGagcatatgcaacaacaaatgcatccACATTTGCGTCATATGCCACCCGGCAGTGGCGCCGTCAATCATACCAACCCCGCCGGTCATCCAACATCGCCACGTCTCATTTCTATCAATCCGCTGCATCAACAACAatcgcaacaacagcaaacacatgcgcatttgcaacaacaacacgccgCCATGTTGCAACAGCATGCCGCAGCCGCGGCGGCTCAGCATTTATCTGGCGCATCACCGAACCCAACCGCCGCCAGCATGTTGCTTGGCTCatcggcacaacaacaacaccatcacagcctacaacaacagcaacaacacttgcaacatcagcaacaacaactgctacagcaacaacagcaatcgcaTCCACTGAAAGCCAGCAGcaaacaacaaatgcatttaTTGCCACCAGGCGCTAACGGTAATGGCGCGAACGCGGTCAACACACCACCCGGCAACGACGCCTACATGAGCGTCTCACACGCGcatgccgcagcagcagcagcacacgcCGCGGCGGCAgctgcagcggcagcagcacaTGCGGCCGCCGCCCACCAGCACGCGCAGAATCAAGAATCGCGTCCATCGGTGATCGAGTCCAGTCAACCGATGATCATTGAGTGCACGTAG
Protein Sequence: MNVQLAQQSAAHTTRKHCNSNNSSSTSISRISNNTHNNNNNNMNTTVNTQQQQQQPAHNRTMSTVAAAATTSTLTHRTQQQSAALVPPPTASTTTTTTAPTSAPMRSAPRSPSPDGTQDYDVTRMREEDFERLAVYIVPDVQCERGIANRADRTLPRSLTLKPSMVFSTPNVKTEGVWSTGVIPRGTRFGPFEGVPTPNYPNDKNKARYFWRVQETRHITYGNIKIFKDDDFYYLDGSDRAQANWMRYVASAYSLSVMNLVACQHQENIYFYTTRDIMPNEELMVWYCKDFARRLGYDVDPERTIFGACKQAVCDDDEDAEADAEDEDVSSNATATSPLLLSHKAKLRTNSPYCMPAPEIPPEVAYNHITYVMGLPIPPMPAVAGNAGVSRRSITPSPSPPSCRESSASHMPQHLVGLPHIHHAQSTQRQSNAHQHQLPAATHLQHHQHIQQHQTVLHLKQEPGASSVIVRERSPASSDCGVKEAKDVAGSPIPHKDTHYEHQLTPNDGSVRSVRSDEGYHSNEYHEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVITHPQKAAVAAAVAAAAAAANSNSNNNAVVNNNNTALTPAVVSSATASMDCGGDKNEYRKFKVKMPLKYEFKNSKCAIKTEAMCHINNTTNSNQNTSDELPTVGATSSEDDLLAANEATPACTSSTQLDDDAMDVDHMPGSTTQQQHASSTVIVVDRSLSSANGHATRTIVPLNKAYYEAETTTPPPPTATQSASAASVAYMRFTPPSSSILETILTGQHRLEAAAAAAAACRHANAATPPPSSPTEMAYSYKKSHRYGNAVSPDSSSNLAQAPDMHAASMHDTEMLIASSRGSLKDDCSPPPPPGHHVIFSPAHVGHSAFVSDGHQTPPYSAYSPYSSSSVNGGAPGGGHPLSHMPTSTFHSPPHSSHSPFDRQSNASSGSTPNLHLLQSSSQMLMQPLRISPPSSLSPDGNSCPRSGSPLSPNSLAARGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNDLEEELAMAAAATSECLDKDLPEPDSREAFEHMQQQMHPHLRHMPPGSGAVNHTNPAGHPTSPRLISINPLHQQQSQQQQTHAHLQQQHAAMLQQHAAAAAAQHLSGASPNPTAASMLLGSSAQQQHHHSLQQQQQHLQHQQQQLLQQQQQSHPLKASSKQQMHLLPPGANGNGANAVNTPPGNDAYMSVSHAHAAAAAAHAAAAAAAAAAHAAAAHQHAQNQESRPSVIESSQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01358436;
90% Identity: iTF_01564111;
80% Identity: -