Zcuc001160.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zeugodacus cucurbitae
Gene Symbol
-
Assembly
GCA_028554725.2
Location
CM053019.1:17757328-17760720[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 3.5e-05 0.0046 18.4 3.4 1 23 318 340 318 340 0.98
2 12 0.018 2.4 9.8 0.2 1 23 347 370 347 370 0.96
3 12 2.6e-06 0.00035 21.9 0.1 2 23 376 397 375 397 0.97
4 12 0.00034 0.044 15.3 3.5 1 23 403 426 403 426 0.97
5 12 0.0003 0.039 15.5 1.4 1 23 431 455 431 455 0.94
6 12 0.0013 0.17 13.5 0.4 1 23 460 483 460 483 0.97
7 12 0.0051 0.67 11.6 4.2 1 23 602 625 602 625 0.97
8 12 1.3e-05 0.0017 19.7 0.3 2 21 633 652 632 653 0.95
9 12 0.0025 0.33 12.5 3.0 1 23 662 684 662 684 0.98
10 12 0.00066 0.087 14.4 2.5 1 23 690 713 690 713 0.98
11 12 0.00037 0.048 15.2 0.7 1 23 718 742 718 742 0.95
12 12 7.2e-05 0.0095 17.4 0.6 1 23 748 771 748 771 0.97

Sequence Information

Coding Sequence
ATGCAATCCGGCGAAGTTGCCAATTCTACGTCCATCACGTCATTGGACTTTGTTGATCTATCCGACTATTGTCGTCTTTGCCTGCAAATACCGGAGGACTCACAATTGCTGGATTTACAGTTAATTTATGATGAAGAGGAACAACTCAGCTATTATGATTGCTTTATCATATGTACACAAATTGATTTGCACGCTGGCGGCATTAATGCACCACATCAGCTATGCAAATCTTGTGGCTTAGAATTACAAGTGGCAtatgattttcataaaaaagtgcaagaatcaaaaaagtttttattgcaatttcaaaaATCACATATTACTGATGGAGAAGCATTGGATACAACAATGACAAAAGATGGGACACAACAAGAAACAGATATACTTATTGAAGACCTAGAACAAAAAACAAGTGATGACACAGAAGTAGCTGAACCAATACAATTAGAAAATGAGTCAATAGATAATGAAATTGCCACTGCGGAAGAGGAAAATATAGAGCAATTAGAAGCGCCGATAGAATATGAAGAGCTGGAAGAGCATATTGAAATGGAAGAGTATCAATCTGTTGATGAGCTAATGGATGATGATGCGGAAACAGTACAAATAAGAATCGATGACGACGAATATGTAATACAAAAGTTGAATTTAAGTGCGGATACTAATACCGAAGCCTTAATCGAGCCACTACATAAAAGCACAGATTTGCCTAAAACAACtcacaaaaaatcacaaattcaaaacaaagtcaaacataaatttgatggTGAGAATGTCGACAGTGCTGGTACCGATGGCGACTTAACGAATGATGagataaatattatgaaaagtaACGAGGAGTacttacaaaacaataaaacagctATAACGGAATCCAAAAGCGATGTGAACTATGTAGTGATTTCGAAAAAAGGTGACATTCAACCACGACGTCGATACAGCGGTAAATATAGCTGTGAATATTGTcagaaagtatttaaaaatcgtTCACGCATGCTAACTCATCGTCGTTCGCACGAACCAGACCGTCCGAAGTACGAATGCGAAGAGTGTGGCCGTTTGTATGCCACAAAACAGGCTAAGGATGTACATGTGCGTTCCTACCACAACAGAAACGGACTTAAGTGTCCAATTTGTGATAAAGTCTTCGTCATAAATAAGTTACTTGAAGTGCATATGCGATATCATACTGGTGATTTTCCGTATGTTTGTGATATATGTGGACAGAAGTTTGCACAAATGTGTCATTTGAACACccataaaaatgttaaacacaATAGTGTGCGCTTCTCCTGTGAACATCCCGGCTGTGGTAAATATTTCACCTCATCTGCCTCGTTACGTAATCACGAGTTTTCACACGGCACAATGCCATTCGAGTGCGCGTATTGTAAGCGTGGCTATCCGGCGAAGGCAAAATTAAAAGTGCATATACGTCAAAAACATGACATTGAAGTGTCGCTTGAACAAATGGAGGAAATGCGAAATGAAAGTGATGAACCCACTGTTGCTATGCAGCCCGAAGATGACTCCATACCCTTTTCGACAGATAAGTCCATCGATGAATCGGAATCGTTGAATTATTCAACTGCAGTAAATATCAGCACTCCAACCGTTCTTGTGAAGTTAGCACCTCCATCTGATGCCGATGATATTAATTTAGAAGAATATCTCTTTGAAAATCCCGAAACATCCGAAAGTTCGAAAAATGAACCGATGCGACAAGAAGTGAAGACTTCAGGAAAATTTAGGAGTACAAGCAAGCGCGGACGCGCGCCACTCATACCAGGTGGTCCACCATTTCAATGCGAATATTGCGATCATACAAGCCCGTCACGTTCACTTTTAGCCTCACATCGACATCGTAAACATCGTTTTAATAAGCCACCCAATAAATGTGCGGAATGTGGCAAAGAGTTTGCAACCAAACAACAATTGGAGCGTCATCAACAGCGTGTTAGTTGTCAATCTTATCCCGTCTTCAAGTGTGAATTTTGTGAGAAAACATGTATCGGTCGTGCCAACTATCAGATACATTTACGTTTTCACAAAAAAGTCTATCCATTTGTGTGTCATATATGCGCGAAACCCTTTATGATGGCGCAACATCTTAATAACCATGTGAAAACGAAGCATGAGGGCCAACGTTTCATCTGTGAAGAGGAGAATTGTGGTAAAATGTTTCAAACGGCACATGCACTTAAAAATCATGCTTACACGCACGTCGATCAGTTGCCCTATCGCTGTGAGTACTGTCAGCAAGATTTTGCCACCAAGGGCAGGCTTCGTTGGCACATAAGCAGAATACATGGCATAGAGCATACTTTGGACGAGCTGGACAGCATGTTGGTGGCCAAAGAGATTAAACTGAAAGCGAAATTGCGACCAGCATTGACACCTGAGCGCAACGAACAGGGTGAGGTGCCAGATGAGGACGATCTAGAAGGCTACTGA
Protein Sequence
MQSGEVANSTSITSLDFVDLSDYCRLCLQIPEDSQLLDLQLIYDEEEQLSYYDCFIICTQIDLHAGGINAPHQLCKSCGLELQVAYDFHKKVQESKKFLLQFQKSHITDGEALDTTMTKDGTQQETDILIEDLEQKTSDDTEVAEPIQLENESIDNEIATAEEENIEQLEAPIEYEELEEHIEMEEYQSVDELMDDDAETVQIRIDDDEYVIQKLNLSADTNTEALIEPLHKSTDLPKTTHKKSQIQNKVKHKFDGENVDSAGTDGDLTNDEINIMKSNEEYLQNNKTAITESKSDVNYVVISKKGDIQPRRRYSGKYSCEYCQKVFKNRSRMLTHRRSHEPDRPKYECEECGRLYATKQAKDVHVRSYHNRNGLKCPICDKVFVINKLLEVHMRYHTGDFPYVCDICGQKFAQMCHLNTHKNVKHNSVRFSCEHPGCGKYFTSSASLRNHEFSHGTMPFECAYCKRGYPAKAKLKVHIRQKHDIEVSLEQMEEMRNESDEPTVAMQPEDDSIPFSTDKSIDESESLNYSTAVNISTPTVLVKLAPPSDADDINLEEYLFENPETSESSKNEPMRQEVKTSGKFRSTSKRGRAPLIPGGPPFQCEYCDHTSPSRSLLASHRHRKHRFNKPPNKCAECGKEFATKQQLERHQQRVSCQSYPVFKCEFCEKTCIGRANYQIHLRFHKKVYPFVCHICAKPFMMAQHLNNHVKTKHEGQRFICEEENCGKMFQTAHALKNHAYTHVDQLPYRCEYCQQDFATKGRLRWHISRIHGIEHTLDELDSMLVAKEIKLKAKLRPALTPERNEQGEVPDEDDLEGY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-