Basic Information

Insect: Zeugodacus cucurbitae
Gene Symbol: su(Hw)
Assembly: GCA_028554725.2
Location: CM053019.1:82632554-82635457[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00016 0.021 16.3 2.0 1 20 127 146 127 148 0.95

2 12 7.6e-06 0.001 20.5 0.3 3 23 199 220 197 220 0.93

3 12 0.15 20 6.9 0.2 1 23 226 248 226 248 0.93

4 12 6.8e-07 8.9e-05 23.8 1.8 1 21 255 275 255 276 0.95

5 12 1.2e-06 0.00015 23.0 0.9 2 23 288 309 287 309 0.97

6 12 7.2e-05 0.0095 17.4 4.4 1 23 320 342 320 342 0.99

7 12 7.2e-05 0.0095 17.4 0.9 1 23 348 370 348 370 0.97

8 12 6.4e-06 0.00084 20.7 0.7 1 23 376 398 376 398 0.99

9 12 4e-07 5.3e-05 24.5 2.4 1 23 404 426 404 426 0.98

10 12 4.7e-06 0.00062 21.1 3.3 1 23 430 452 430 452 0.98

11 12 0.00038 0.05 15.1 0.4 2 21 455 474 454 478 0.91

12 12 0.028 3.7 9.2 0.7 2 23 500 522 499 522 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00016	0.021	16.3	2.0	1	20	127	146	127	148	0.95
2	12	7.6e-06	0.001	20.5	0.3	3	23	199	220	197	220	0.93
3	12	0.15	20	6.9	0.2	1	23	226	248	226	248	0.93
4	12	6.8e-07	8.9e-05	23.8	1.8	1	21	255	275	255	276	0.95
5	12	1.2e-06	0.00015	23.0	0.9	2	23	288	309	287	309	0.97
6	12	7.2e-05	0.0095	17.4	4.4	1	23	320	342	320	342	0.99
7	12	7.2e-05	0.0095	17.4	0.9	1	23	348	370	348	370	0.97
8	12	6.4e-06	0.00084	20.7	0.7	1	23	376	398	376	398	0.99
9	12	4e-07	5.3e-05	24.5	2.4	1	23	404	426	404	426	0.98
10	12	4.7e-06	0.00062	21.1	3.3	1	23	430	452	430	452	0.98
11	12	0.00038	0.05	15.1	0.4	2	21	455	474	454	478	0.91
12	12	0.028	3.7	9.2	0.7	2	23	500	522	499	522	0.94

Sequence Information

Coding Sequence: ATGGGGGATTCCAACAAAAAATCGAGCCCTAAGGTTAAAGAACCTGGGAACCAAACAAGTCCAAACactgtaaaaatattgaatgatCGCGCCTCAAAACGTACGAAGCCAAGTAGTCCGGAGTCTAGTCCAACATCAAAACATGTGAAGCTTTCTATgggaaaaaacaaaactattgttGAAAATAATGATGACATGGAccattatgtattgaaaaccaTAAAAGACGAGGCCAACTTGGAGGGTGGCGAAACAATAGCTTTTGTTTTGAATGAGAAGCCGAAAGATGTAAACAGCGCTGTTGGAGAAGTTGCTGAAGAACTCCAAATCAGCGAGGAGGAAGCGGATGACGCCGATGGGAAAAATGAGCTAATGGATCACGTTTGCGGCAAATGTTACAAAACTTTCAGACGATTCAgtGGCCTTAAAAATCATATGGAATTTTGTCGTTACGACAGTGGTTATCACTTACGGAAAAATGAAATGTTAAAGAATCTTGATAAAATCGAGAAAGATGCTGTTACTATGGAGAAGAAAGATGTCTGTTTTTGTTGTGGCGAAAGTTATGACACATTCCATTTGGGGCATATTAATTGCCCGGATTGTCCAAAGTCATTCAAATCGCAAATGAGCTATGAGCGCCACATATTTATTACGCACTCTGAATTCGACACTTACCCCTGCTCCATTTGTAATGCAAAACTGCGCAGCGATAACTTATTGAAACTGCACGAAGAGCAGCATAAAAATCGTGGAAAGCCATTTGCTTGTAAAATATGTGGAAAAGACTTTACACGTGCGTACCATCTCAAACGTCATCAGAAGTATTCATCGTGTTCGGCCACAGGAAGTGACTCCATGAAGTGTAAAGTATGTGATAAGGCCTTCTTTCGGTTGGACAATTTGCGTGCGCATCTAAGGCAGCATTTGGGTACGCATGTTACCAAGAAGCCGGAATATAGATGCCCACAATGTAAAAATTGCTTTTACAGCTTGTCTACATTAAAcATTCACACGCGTACACACACCGGAGAGCGGCCTTTCGATTGCGATTTATGTGAAAAGAAATTCCCCACTTTGATTGCCTTGAAAAAACACCGACGCTATCATACTGGCGAAAAGCCTTACACTTGCTCTGTTTGTAATCAATCGTTTGCGGTTAAGGAGGTGCTGAACCGTCACATGAAGCGGCACACGGGTGAAAGACCACATACTTGCACGGAGTGCAATAAAAGCTTTATCCAGGCATCACAATTGCGCAGTCATGCGCGCACGCACATTTTACCGTTCGAATGCTCAGAGTGcgatcaaaaattcaaaacccaaaaaaaCCTCGACAAGCACAAAAAGACGCACATCAAGAAATGTTACGAGTGCAATAGCACTTTCGCCGATCAGTCTCAACTGGAGGATCATATGGCAAACTTCGTCCACAAAAAAACAACCAAAACACCGAGGAAAGCAGTTACTCGTAAATCTACAAGACGCACGCGTACCTATTGCTATGTGTGCGATGAGGATTTCACTACCTTGAAAAACTTCCAATTTCACATACTCAAGGTGCATGAGATGGATCCCGATGATTTTGTTAATGAGATACCAAAAGAAAACGAAGCAACCAAAACGAATGAAAACGTATACAAAATCGAAGGTGGCGCATCAAACGAAATACAGATACTTAGCGAAACAGAGGGTAATGCCGCTATTATGGCCGCTAGCAGTGTGGGGAGCAAAgagatttacaacaacaacgaaggtAGTAAAGGTGGTTTAGTGGTGAAAGAGTTCATCGTCAATGATGTCCCCGCCACTGAAGAATCAGCCGTGGTTATTCATGATGAAGCGTATACTGTTATACCATTGGACGGCGATGGTCCAATAGAAACAGTGACTGCTGTTACTATGAGTCCTATAAACATATCAACAGAAGTGAAAAAGGAGCGTCGCAAATCATTAGCTGAATCACTGGCCGTGGCGATTGGCTCAGACAGCGTTACATTGAAAGAGCCAATGCAATTGAATGAAGAAGATATGAAATTGAAGGAGAATGTCGGCAAATTGCTCGATATGTTGGTGGACAACAAAACTTTAAAGAAATTCGGCTGGCCAACCAATACCGAAGAGAATGTTTTATGTCGCGTCATTGAAAATTGCGGCTATAACTTAACAAAAGATGCTGAAATATATCGCGATTGCGATTATGCGACGCGGATGCGTGAATATGTAAAACTATTATTTACAGTAGTGATACATAATGACTCCATTAAGGAATTGTTAAATAATTACCCCATCGATGAGGTAGTTGAGTACGTGCTGGGTAATGATGACGACGAGGACGAAGATGGTGATAACGATAAAGATGATGATGACAATagtaatatgaaaaattag
Protein Sequence: MGDSNKKSSPKVKEPGNQTSPNTVKILNDRASKRTKPSSPESSPTSKHVKLSMGKNKTIVENNDDMDHYVLKTIKDEANLEGGETIAFVLNEKPKDVNSAVGEVAEELQISEEEADDADGKNELMDHVCGKCYKTFRRFSGLKNHMEFCRYDSGYHLRKNEMLKNLDKIEKDAVTMEKKDVCFCCGESYDTFHLGHINCPDCPKSFKSQMSYERHIFITHSEFDTYPCSICNAKLRSDNLLKLHEEQHKNRGKPFACKICGKDFTRAYHLKRHQKYSSCSATGSDSMKCKVCDKAFFRLDNLRAHLRQHLGTHVTKKPEYRCPQCKNCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPTLIALKKHRRYHTGEKPYTCSVCNQSFAVKEVLNRHMKRHTGERPHTCTECNKSFIQASQLRSHARTHILPFECSECDQKFKTQKNLDKHKKTHIKKCYECNSTFADQSQLEDHMANFVHKKTTKTPRKAVTRKSTRRTRTYCYVCDEDFTTLKNFQFHILKVHEMDPDDFVNEIPKENEATKTNENVYKIEGGASNEIQILSETEGNAAIMAASSVGSKEIYNNNEGSKGGLVVKEFIVNDVPATEESAVVIHDEAYTVIPLDGDGPIETVTAVTMSPINISTEVKKERRKSLAESLAVAIGSDSVTLKEPMQLNEEDMKLKENVGKLLDMLVDNKTLKKFGWPTNTEENVLCRVIENCGYNLTKDAEIYRDCDYATRMREYVKLLFTVVIHNDSIKELLNNYPIDEVVEYVLGNDDDEDEDGDNDKDDDDNSNMKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01045632;
90% Identity: iTF_00192957;
80% Identity: -