Zcuc024443.1
Basic Information
- Insect
- Zeugodacus cucurbitae
- Gene Symbol
- retn
- Assembly
- GCA_028554725.2
- Location
- CM053023.1:65829440-65846756[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-19 1.2e-15 58.7 0.0 16 89 81 152 76 152 0.93 2 2 0.93 4.4e+03 -0.8 0.0 18 39 492 511 476 514 0.72
Sequence Information
- Coding Sequence
- ATGGCATTTGGTTACGTTTTACGCTTACGTATTAGTCACACGCACATGCATaggcacaacagcaacaacaacaagccgcAGAGAAGTACAGGTGTGCTCGCGGCCATCAGCTGCCCAGCGCGTGcgaATAACAACAAGTGCAAATTTGGTCGCCCATCTGCGATGGCAGTGTGCGCCATCTGCTGCTGGCCAAAGGATTACCAGCAAGGCGGTGGCGCATCGTCGCCATGCGTTTCTACAGcaaGCACACCCATCAATCGCTTACCGAtaatggcgaaatcggttttGGATTTATACGAGCTATATAATTTGGTTATAGCACGTGGCGGTCTTGTTGATGTTATCAATAAGAAATTATGGCAGGAAATCATTAAGGGTCTACATTTACCCTCAAGCATAACAAGTGCGGCATTCACATTGAGAACACAATACATGAAATACCTTTATCCATACGAATGCGATAAGAAGAATCTGAGCACACCGGCTGAGCTGCAGGCGGCCATTGACGGCAATCGGCGTGAGGGTCGTCGCTCCAGTTACGGGCAATACGAGGCTATGCATACTCAAATGCAAATGCCGCAAATTGGACGTCCAACATTGCCGGGAAGCATACAGCAAATGTCACCGTTGGCGCTTGTCACACACGCCGCCAATAATCAGCAAGCGCAAGCCGCGGCTGCAGCTGCCGCCGCACACCACAGACTGATGGCGCCCTCCTTCGGTCAAATGCCAAATCTGATGACGCACGAATTTGAGCAGCGCATGATGGAATATATCAAATTGATACAGGTGAAGAAGGAGCAGCAGAACAACGCCGctgcggcggcggtggcggcagcTGCAGCTGCTAGTGGCAATGTGGGCGGTGTTGTGGGTGCCGATGCAGCGGCTTTGGCGCGTGTCAGTGCAGCTGGCAGCGGTAATGCGGCGCACATgaaacaacagcagcatcaaCATTCAGCAAGTCCGGAACCTGTCAATCATGAGGCTATGAACGCATTGGATATTTCGCGCGTCGCATTTTGGCAAATGTATCACAACAACACCAGCCCGCCAACATCGATAAACACCTCACCACAGGGAAATGTGGCCGGAGCGGCGAATATCGGTGGAGTAAATGCAATGGGCGTGCCAAGTCTAAACGAACAAAACAGTGAAGCACTCAACCTTTCCGACTCACCGCCAAATATCAACAACATCAAACGCGAGCGTGAACGCGAACAATCGCCGGAGCCATGCGATCGCGACGATTTCCATAACCAATCACCGCCAGCGAAACGTGGTGCACTCAACTTCCCAACTGGTTTTTATCTACCACCCGGCatggctgcagcagcagcagccgcggcTGCCGCCAATTTCCATCAACAGAACCACAGCAACAATCATCTGCCACAAGACTCCGATGGTGAGGATGGCGATGATGACGCTGATACGcacaacaccaccaacaactCAATGGCACAAGACGAAGAGTCCGAACGCCCAGCATTGAATGGTCATCATCTTCAACAACATCATCTCCATCAGCTGCATCACTTGCCACACAATCTACAAATGCCCCACCATCAACATCTCGTCAACAATACGAGCGGCAATCATGACAAGTCTGATGACTCGGCCATCGAAAATTCTCCCTCGACCAGCGCGGTTTCGGCTGGTGGCGGTGGCGTCGACAGCGCCAATGACAATGGTGCTTGTGGTGGCAGTGCGAGCGGTCACATTTCACCGGTGTCTACAAAGAAGATTCACCTGTCGAAGCAACAAAATAATGGTGGCGCATCAGCGATGGATTGCAGCAGTGGTGGTGCTGGACGCGCTCAATCCAATAGCCCCAGTTTAGGTGGCGTGGAAGACGCATTAAATCTGCTTTCGGGCATGCAATTCCGTGTGGCGCGTAATGGCACCAACGCTAATGGCGAACAACAATTGACTGTAAACCTCGAATTGAATGGCGTTAAGTACTCGGGTGTACTAATCGCCAATACCGCTAACAATACCAACTCCAGAGCTCCTTCAGTAGCGGATCTTCAGCAAAATAAAAGCGAACTCATGGAGAACAACGAATTAACAGATGCGACAGCAGATGAGGCAAAAGATATGAGCGCGGGTGGTACCAGTGGTGCCGACGCTGACATCGAAGATGAGGACATGGCTGATATGGCCAGCACAACCAGCACTGACGAAGCTTCGCCaacaaaattgaacaaaaatgttGGCAACGCTTTAACAGCAATCAATAATAACGGTGCGCTAAATGACAGTAACGTTATAAGTGATACCGTTATGTCGGCGTCTTAA
- Protein Sequence
- MAFGYVLRLRISHTHMHRHNSNNNKPQRSTGVLAAISCPARANNNKCKFGRPSAMAVCAICCWPKDYQQGGGASSPCVSTASTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHTQMQMPQIGRPTLPGSIQQMSPLALVTHAANNQQAQAAAAAAAAHHRLMAPSFGQMPNLMTHEFEQRMMEYIKLIQVKKEQQNNAAAAAVAAAAAASGNVGGVVGADAAALARVSAAGSGNAAHMKQQQHQHSASPEPVNHEAMNALDISRVAFWQMYHNNTSPPTSINTSPQGNVAGAANIGGVNAMGVPSLNEQNSEALNLSDSPPNINNIKREREREQSPEPCDRDDFHNQSPPAKRGALNFPTGFYLPPGMAAAAAAAAAANFHQQNHSNNHLPQDSDGEDGDDDADTHNTTNNSMAQDEESERPALNGHHLQQHHLHQLHHLPHNLQMPHHQHLVNNTSGNHDKSDDSAIENSPSTSAVSAGGGGVDSANDNGACGGSASGHISPVSTKKIHLSKQQNNGGASAMDCSSGGAGRAQSNSPSLGGVEDALNLLSGMQFRVARNGTNANGEQQLTVNLELNGVKYSGVLIANTANNTNSRAPSVADLQQNKSELMENNELTDATADEAKDMSAGGTSGADADIEDEDMADMASTTSTDEASPTKLNKNVGNALTAINNNGALNDSNVISDTVMSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01563473;
- 90% Identity
- iTF_01563473;
- 80% Identity
- -