Zces015968.1
Basic Information
- Insect
- Zerene cesonia
- Gene Symbol
- Hivep1
- Assembly
- GCA_012273895.1
- Location
- JAAMXH010000031.1:2728422-2738566[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.035 2.3 8.7 0.1 1 23 196 219 196 219 0.97 2 11 3.2 2.1e+02 2.5 2.1 2 23 227 248 226 250 0.92 3 11 0.11 7.2 7.1 0.2 1 23 252 275 252 275 0.84 4 11 0.014 0.91 10.0 2.9 1 23 282 304 282 304 0.98 5 11 2e-06 0.00013 22.0 0.5 2 23 310 332 309 332 0.97 6 11 9.2e-06 0.00061 20.0 1.0 1 23 339 361 339 361 0.96 7 11 0.00024 0.016 15.5 3.8 3 23 368 388 367 388 0.97 8 11 0.00056 0.037 14.3 0.7 1 23 399 422 399 422 0.91 9 11 0.0075 0.5 10.8 6.3 1 23 428 451 428 451 0.96 10 11 6.6e-05 0.0044 17.3 1.4 2 23 461 482 460 482 0.97 11 11 0.0064 0.42 11.0 1.5 2 23 489 511 488 511 0.94
Sequence Information
- Coding Sequence
- ATGgagttaattttacaaaaagtttGCATTTGCTGTCATGAGGAAAGACAAAACCTTAGAAGCCTTTCGAAATGCaattttacgtatattttgAATAGTCTTCTTAATAATAAGttagCATAcggaaattataatatctgcGATATTTGTCACTCGACGctgataaaaatagataaatttaaaaaatacgtagAAAAAAACAACGAATTACTAAATGTACGGCttcttcaaaataaacataatatgcaGTCCACAAAAActccatttaaattatgtcaaATATCAAATGTCGAATTAACGTGGACATCGTTAGACCAAAAATTGGaatacgaaattaaaaaagaaatcgaaattgaaattgaagtGAAAGTCGAGAATGACAGCGATTCGAAAATGGAACCGTTTGATATATCGACCGTAGATGACTCACACACTATGGAAATGTTGCCAGCTAAGAAAAAGAAACCACGCACACAGTTTCAAGCAAATTACGAGgggaaaataaatatcgttaCGATATCTATGGACGAATTGGTAAATGAGAGATTGGAGGAGGCACgcaataagaaatatttgcaGTTGCCGTACAAATGTGCGGATTGTATAGTTGCGTTTGAGTTTGAAGAGAGTTTGAACGAACATATGGATAAGAAACATAATGCGacTGACGGCAGTCTAGTATGCTCGGTGTGCAAGTCGGTACTCAGCACGCAGTTGTCATTTAACGAACACTGCAAACGGCATATGAGAAGATATGAATGTGTCGAGTGTGGCAAACGCAGTAAAAACGTCTACCCGATTTTGGAACATTATAATGAGAAGCATGGCAACATTCCAGTTCAGTATTCGTGTAAATTATGCGACTATAGTACCGATTCGAACCGTCGATACCGCTATCACATGGACAAGCATAGAACGGCGAACGTGCAATGTAAAGAGTGTGGCAACACCTTTGTTAATACAACTGGCTTGAAGAATCATATGCGAACGATTCACAAAGCGCTGGCCCGCGTGCACGCGTGCGACGTTTGCGGCAAGCGCTACCGGCGGCGTAACAGCCTGCTCGCGCACGCGCAGAcccacacgcacacacacgcgtACTGCGAGTCGTGCGACAGAACGTTCCGCACGCACACCACGCTCCTGAACCATTTGAAGATGCATTCGAAACACGTTAGCGACGACGTCAAGAGgtACATATGCGACGAGTGCGGTAAGAAATTTCTCAAGAAAAGGTCTCTGCAGGACCATATCGACTTCGATCACTTGAAAAACAGCAAGTATTCTTGTGATAAATGCTCGAagGTGTTCAAATGCCACTCCGGATTGAAGCGTCACACGCAATACGTACATGAGAAGGTTCGCCCGCCGCGGAATAAAATGTGCGACCATTGTGGTCGGGGGTTTACGtCAACATCGATCCTCATAAGTCACATTCGCACGCACACAGGCGAGCGGCCGCTCCATTGCACGCTCTGTCCCGCAACATTTGCGCACTCCGCTGCGCTTTATACACATAAGAAATTGTTACATAATCCTAAACGGAAGAATTCCTAA
- Protein Sequence
- MELILQKVCICCHEERQNLRSLSKCNFTYILNSLLNNKLAYGNYNICDICHSTLIKIDKFKKYVEKNNELLNVRLLQNKHNMQSTKTPFKLCQISNVELTWTSLDQKLEYEIKKEIEIEIEVKVENDSDSKMEPFDISTVDDSHTMEMLPAKKKKPRTQFQANYEGKINIVTISMDELVNERLEEARNKKYLQLPYKCADCIVAFEFEESLNEHMDKKHNATDGSLVCSVCKSVLSTQLSFNEHCKRHMRRYECVECGKRSKNVYPILEHYNEKHGNIPVQYSCKLCDYSTDSNRRYRYHMDKHRTANVQCKECGNTFVNTTGLKNHMRTIHKALARVHACDVCGKRYRRRNSLLAHAQTHTHTHAYCESCDRTFRTHTTLLNHLKMHSKHVSDDVKRYICDECGKKFLKKRSLQDHIDFDHLKNSKYSCDKCSKVFKCHSGLKRHTQYVHEKVRPPRNKMCDHCGRGFTSTSILISHIRTHTGERPLHCTLCPATFAHSAALYTHKKLLHNPKRKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -