Basic Information

Insect: Zerene cesonia
Gene Symbol: -
Assembly: GCA_012273895.1
Location: CM022618.1:2826227-2833161[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.018 1.2 9.6 1.0 2 23 413 435 412 435 0.96

2 7 0.001 0.068 13.5 0.4 3 17 452 466 450 473 0.85

3 7 6.4e-05 0.0042 17.3 1.4 1 23 479 501 479 501 0.99

4 7 1e-06 6.9e-05 22.9 1.0 1 23 514 536 514 536 0.98

5 7 1.2e-06 7.8e-05 22.8 0.8 2 23 543 564 542 564 0.96

6 7 1.5e-06 0.0001 22.4 4.0 1 23 570 592 570 592 0.99

7 7 7.4e-06 0.00049 20.3 1.3 1 21 598 618 598 619 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.018	1.2	9.6	1.0	2	23	413	435	412	435	0.96
2	7	0.001	0.068	13.5	0.4	3	17	452	466	450	473	0.85
3	7	6.4e-05	0.0042	17.3	1.4	1	23	479	501	479	501	0.99
4	7	1e-06	6.9e-05	22.9	1.0	1	23	514	536	514	536	0.98
5	7	1.2e-06	7.8e-05	22.8	0.8	2	23	543	564	542	564	0.96
6	7	1.5e-06	0.0001	22.4	4.0	1	23	570	592	570	592	0.99
7	7	7.4e-06	0.00049	20.3	1.3	1	21	598	618	598	619	0.94

Sequence Information

Coding Sequence: atggaaGGCATTTGTAGGGGTTGTTTAGTTAAATACAGTGATATATCAGAGTTAAACACATACTCTGAAAGGAACAGGCGactgtttgtttattcaacCGGCATCCAGGTGAAGCGCAATGATGCTTTTACATTCCAACtttgtaaaaattgtttttcgaGTATGAAGATATCatgtaattttaagaaatcatGTAGAACTTCTgacaaaaaattgaaaaacttcTTGTATCTGAAAGAAACTAACGACAGTGTGGATTTTAGTACATTCCTTAAAGTGAATGATGATTCTTCTAAAATAGGGTATCCAATAAATGATCAGTATGAAAcacaaaactttaataaaaacaaagatgaTGACAATGTATCAACATCAACAAGTATCCGCAATTTCATGAAGGATATCCTGCAGGGTGACGAGATACCAGATAATGAGGCTCGAATCATTAGCGAGGTTATACAGGAAGAAGCTGATATATCTGATAATTCACTGGATTCACACTGGCTGCAGGATGATGTTTCAGTTGATACTGAATTTAGGTTGGATTTTAGctTCAGTCCATTTTCTACGCCTCGATCAATTATGAATGATCATTGCTACACTtcccaaataaatattgaagataATGAACAAATTTATACCAAATCAACTTCACCTGACACCATATGTATAGAAAAAACCGAATTAGAGTTTgaaaatgacaaaataaaatttgtagattGCAAAATAAACAGATGTGTTATTGACAAAAATTTGGAAAATGCTTTAAAGAATGATGGGACTGACAATTTTTCGTTAGATGCTATATTGGCTACTCCTCCAATGATACCAAATGCATGGACACCATCAACACCAACTATAAACAATATACTCTTTGGTGAAAAGCTAGAAGATGTTCACAAATCTGGTCATAATATAGAGAAGTTTGAAGAAGTCAAAGGCACAATTAATGTTTTGGacgaatttataacatataaagatATCACAAATGATTCTAATCAAGGCATTGAAAAAACCAATCAAGAAACTTCGGAAGATAATAGTGaacatattaatttgatacaagaaaataatgtagAATGTGTTAATTCAGATCaggaattaaaagaaaatcataatgacaatataaaccaaacaataatttcaaatgatgtagaaaaaaatgtagaaGAATCAagagaaatttttaagaaaccTTTATCGCCTGTAGAAAATAAGTGTTCTATAGATGAAAAGTATTGTAAAATGTGTGACTTAAAGTTGAAAAACGTTAGGGGTCTTCAGTTACATATGAGTCGGATGCATAAGTTAAAAGTCCTAATAAACTCCCAGTCAAGGAAGGAAGTCATGATCTGTGATTATTGtggaaaaacattttcttcaAAGAAAGAGTTCTTTGTTAAACATATTGCATTGCATATGAATCCGGAATTGTATCGGTGCAATATATGTTCTTTAACATTTAGCACAGAAGGAAGGCTTAGAATGCATCGATCAACGCATAGCGGAGTTGTAATCAAGAAACCTGTTGAAAAGAAATTTATTTGTCCAGTGTGCGGGGCGTCCTGCTCAACGAAATCCAATTATGTGCTGCACATGCGGCGACACAGCGGTAATTACCTCTGCAAGTGTGCCGAGTGCGGCGCCGGCTTCTATAGGAAGGGGGATCTTACTGTACATATGAGAACACACACAGGAGAGAGGCcctttaaatgtaaatactgTAGCAAAGATTTTGCAAGACACGCCTCCcttaataaacatatgaaaattCATACAGGAGAGAAACCCTATGCCTGCAATTTTTGTAGcaaaaaatttacaacttcatacaatttaaatgtacatcAAATGAGATCATTTGAATGTTTGCAGATGCAagaaaaatttgcattttctGATAGCGCGGtagaaaactaa
Protein Sequence: MEGICRGCLVKYSDISELNTYSERNRRLFVYSTGIQVKRNDAFTFQLCKNCFSSMKISCNFKKSCRTSDKKLKNFLYLKETNDSVDFSTFLKVNDDSSKIGYPINDQYETQNFNKNKDDDNVSTSTSIRNFMKDILQGDEIPDNEARIISEVIQEEADISDNSLDSHWLQDDVSVDTEFRLDFSFSPFSTPRSIMNDHCYTSQINIEDNEQIYTKSTSPDTICIEKTELEFENDKIKFVDCKINRCVIDKNLENALKNDGTDNFSLDAILATPPMIPNAWTPSTPTINNILFGEKLEDVHKSGHNIEKFEEVKGTINVLDEFITYKDITNDSNQGIEKTNQETSEDNSEHINLIQENNVECVNSDQELKENHNDNINQTIISNDVEKNVEESREIFKKPLSPVENKCSIDEKYCKMCDLKLKNVRGLQLHMSRMHKLKVLINSQSRKEVMICDYCGKTFSSKKEFFVKHIALHMNPELYRCNICSLTFSTEGRLRMHRSTHSGVVIKKPVEKKFICPVCGASCSTKSNYVLHMRRHSGNYLCKCAECGAGFYRKGDLTVHMRTHTGERPFKCKYCSKDFARHASLNKHMKIHTGEKPYACNFCSKKFTTSYNLNVHQMRSFECLQMQEKFAFSDSAVEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00357961;
90% Identity: -
80% Identity: -