Basic Information

Insect: Zerene cesonia
Gene Symbol: -
Assembly: GCA_012273895.1
Location: CM022630.1:4373399-4383344[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0031 0.21 12.0 1.2 1 23 234 256 234 256 0.99

2 10 0.013 0.87 10.0 0.7 1 23 263 285 263 285 0.97

3 10 0.00037 0.024 14.9 4.0 1 23 319 342 319 342 0.95

4 10 0.0011 0.073 13.4 0.4 2 23 348 370 347 370 0.96

5 10 4.3e-06 0.00029 21.0 0.3 1 23 384 406 384 406 0.97

6 10 8.8e-05 0.0058 16.9 1.2 1 22 412 433 412 437 0.93

7 10 8.1e-06 0.00053 20.1 1.6 2 23 446 468 445 468 0.96

8 10 4.4e-06 0.00029 21.0 1.0 1 23 474 497 474 497 0.97

9 10 3e-05 0.002 18.4 3.4 1 23 506 528 506 528 0.98

10 10 0.00052 0.034 14.5 0.7 1 23 534 557 534 557 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0031	0.21	12.0	1.2	1	23	234	256	234	256	0.99
2	10	0.013	0.87	10.0	0.7	1	23	263	285	263	285	0.97
3	10	0.00037	0.024	14.9	4.0	1	23	319	342	319	342	0.95
4	10	0.0011	0.073	13.4	0.4	2	23	348	370	347	370	0.96
5	10	4.3e-06	0.00029	21.0	0.3	1	23	384	406	384	406	0.97
6	10	8.8e-05	0.0058	16.9	1.2	1	22	412	433	412	437	0.93
7	10	8.1e-06	0.00053	20.1	1.6	2	23	446	468	445	468	0.96
8	10	4.4e-06	0.00029	21.0	1.0	1	23	474	497	474	497	0.97
9	10	3e-05	0.002	18.4	3.4	1	23	506	528	506	528	0.98
10	10	0.00052	0.034	14.5	0.7	1	23	534	557	534	557	0.97

Sequence Information

Coding Sequence: ATGGAGTCATTACCGGAACCAATCGAACGGTGCATCGGCTGTTTTAATAATGACAATGTTCCTCAAATATATAGAGTGCAAAGcgatgttttaaaaacagtttttcaGACTGATAGGCTGAGcctatgttatatttgtaagaGAATAGCACAGAATGCAGAACTATTCGTCCATAGTGTGCAAGGGAACCAATTGTTACTGCAAAGTTTAAAGAGTATTTCAGATGGGGATATAAAAGCTGTTAAGCTAGGGACTCAGCCATTGGTAGATCTACAAAATGCGAGCACACATACGATTGATGTTTGTGAAGATATACAGGCAGAACCTTACCCTGTATTAGTCTTCAATAGAAGTAAAGTCCACTTGAAGGTGGAAAAAGTCGAAAATGGGAATCATGACGATTTTACGGACAATGAAGTAGATTATGACGAgccattattaattaaaggagaaaatgaaaatacgcAAGAAGTAAAATTTGAAGACAATTTAATAGATAGCATTgataaaaaaaccataaagaaattgataaaaaacacTACAAAACTCaagaaaaaatcaaaaattaaaaggaaGAAATGCTCTTCACCATGTGATGTGAAAgATGCACTAAAAATAGACACAGTATACATAACCAGGGAGCAATTTATGAAGGAAAGGGAGGAAttggaaaagaaaaaattatacttaaattcaatttataagtgTGAGAGTTGTGTCAAAGGATTTGCATTCAaggaaatttatgaaaaacatatGAGGAAGCACAGTGAGgCAAATGGTGAATATGAATGCGATTTGTGTAAACAAAGAGTTAATTCGCTTGAGAAATTAATGAGCCACgagaaatatcataaaatccgATACAGATGCGGTGTATGTGGGATAATGAGAGTGTGTCGGGAAACCATTAAATGTCACTATAATTCTGCACATTCCAACGACAAAGAAATGTTTGCTTGCACACTTTGTAAACGGATATTTCAACGGAAGGTGTCGTTAAGGAAACACATGCACTACACGCACAAGCTGCGGCGCGTCACTTGTGACTATTGCTTTAAAAACTACGCAAATATCGAGTCGCTGAGGGTGCATTTGCTCAAGAAGCACTCGAAGCAAGCGTCCAACGGTATAACACCAACGAGGGGGCACGTTTGCCCGCAGTGCGGGAAGGGATTCTATTCCGCGGCCACGCTGCGGATACATACCGAAACGCATTCCGATACGAGAGATTACTATTGCGTCGAATGTAATAAaaatttcaaAACGGAAATGTCATTAAAACAACACTTAAATAAAACGTCGCCGCACGTTCAGTATGTGGAGTTACCattgCAATGTGAACACTGCGACAAGAGGTTTGGAATAAAACGGGACTTGGAGAGGCACATGAATAGAATTCATCTCAACATTAGACCATTCCAGTGTGATAAATGCGACAAGGCATACGTAAACCAGTGGTCGTTAACAGAGCACCGAAGGTACACGCACGAAGGTTTCACCAGGCCGCGTGTGTTTCCTTGCTCCATGTGCGATAAGGTGTTTATGagGAATTGCACACGTAAAGCGCACATGCGCACGCACACGGGCGAGAGGCCGTTTAAATGCACTAAATGTTTGGCGCAATTCAGCCAATCGGGTGTTCTCAACACGCATATGAAATTAGTGCATCTAAAACTCACGAGGGATGGACGACCTAAGACCGCAGCCACTGGTTTAAGATAA
Protein Sequence: MESLPEPIERCIGCFNNDNVPQIYRVQSDVLKTVFQTDRLSLCYICKRIAQNAELFVHSVQGNQLLLQSLKSISDGDIKAVKLGTQPLVDLQNASTHTIDVCEDIQAEPYPVLVFNRSKVHLKVEKVENGNHDDFTDNEVDYDEPLLIKGENENTQEVKFEDNLIDSIDKKTIKKLIKNTTKLKKKSKIKRKKCSSPCDVKDALKIDTVYITREQFMKEREELEKKKLYLNSIYKCESCVKGFAFKEIYEKHMRKHSEANGEYECDLCKQRVNSLEKLMSHEKYHKIRYRCGVCGIMRVCRETIKCHYNSAHSNDKEMFACTLCKRIFQRKVSLRKHMHYTHKLRRVTCDYCFKNYANIESLRVHLLKKHSKQASNGITPTRGHVCPQCGKGFYSAATLRIHTETHSDTRDYYCVECNKNFKTEMSLKQHLNKTSPHVQYVELPLQCEHCDKRFGIKRDLERHMNRIHLNIRPFQCDKCDKAYVNQWSLTEHRRYTHEGFTRPRVFPCSMCDKVFMRNCTRKAHMRTHTGERPFKCTKCLAQFSQSGVLNTHMKLVHLKLTRDGRPKTAATGLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358874;
90% Identity: -
80% Identity: -