Basic Information

Insect: Zerene cesonia
Gene Symbol: -
Assembly: GCA_012273895.1
Location: CM022614.1:3083783-3093879[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.1e-05 0.006 16.8 0.5 1 23 136 158 136 158 0.95

2 11 0.00042 0.027 14.8 2.4 1 23 164 186 164 186 0.96

3 11 2.9e-05 0.0019 18.4 0.3 1 23 268 290 268 290 0.98

4 11 5.4 3.6e+02 1.8 0.1 2 21 297 316 296 319 0.79

5 11 0.00043 0.029 14.7 0.0 3 23 371 392 369 392 0.90

6 11 0.0035 0.23 11.8 0.2 1 23 408 430 408 430 0.96

7 11 6.8e-06 0.00045 20.4 0.2 1 23 460 482 460 482 0.98

8 11 0.00044 0.029 14.7 0.2 1 23 488 510 488 510 0.97

9 11 0.00025 0.017 15.4 0.3 1 23 516 538 516 539 0.95

10 11 0.69 46 4.6 0.0 1 23 552 574 552 574 0.92

11 11 0.041 2.7 8.5 0.0 2 20 726 744 725 747 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.1e-05	0.006	16.8	0.5	1	23	136	158	136	158	0.95
2	11	0.00042	0.027	14.8	2.4	1	23	164	186	164	186	0.96
3	11	2.9e-05	0.0019	18.4	0.3	1	23	268	290	268	290	0.98
4	11	5.4	3.6e+02	1.8	0.1	2	21	297	316	296	319	0.79
5	11	0.00043	0.029	14.7	0.0	3	23	371	392	369	392	0.90
6	11	0.0035	0.23	11.8	0.2	1	23	408	430	408	430	0.96
7	11	6.8e-06	0.00045	20.4	0.2	1	23	460	482	460	482	0.98
8	11	0.00044	0.029	14.7	0.2	1	23	488	510	488	510	0.97
9	11	0.00025	0.017	15.4	0.3	1	23	516	538	516	539	0.95
10	11	0.69	46	4.6	0.0	1	23	552	574	552	574	0.92
11	11	0.041	2.7	8.5	0.0	2	20	726	744	725	747	0.92

Sequence Information

Coding Sequence: atggaaGGAGAACAATTCCACCTCCGTTGGGAGGAGGCTGATATAAAAcCAAATATAGAGGTGACTGAAGAAGTTATATGTGGATTAGAAAATGTGCAATGTGTGCCTTATTCAAATATGacgGCAGAAGAATTAATTGCCAATGCAGACAATATAGCAGCAGAAAATCTTGTATTCTTATCCCAAGATGTGAATTACACCGAATCAGCTGAGTTAGCTGCAGATCCTAGTGTTGAGTGTGTTACTGAGGAAGTTATTACTGATGACTGGGTGATTAGTGGAGAACAAGAAagAGTGGAAGTGCCTTTAGAGCATCTCGCGCAACCAGTGCAGAATGTGAAAGTAGAAAATGACCTTGATGTGCCATTACCAACAGAtcaggaTGAATACACAGCAATGCGACCATTTCCCTGCGACTTTTGCTCACGGCGATTCCGAAAGAAAGCAGCTCTTATGAACCATATGGTTGCGCATCAAAATGATCGGCCACATGCGTGCAACCTCTGCGGCGTAAGATATGTGCGCAAATGTGACCTCATGAACCATCTTAAAGTACACGCCTTTATACCAGATAATGAGCCCAtagaatatcataataatgAGGAAGAAATACACAATGCCTCCCTATTAAAGCCAAGGAAGAAACGAGGAAGACGGAAAAAGAAACCAGAACCCGTAGAAAACGGTGTGCCAGACGTACATATGACGTCAGCGCGCACGCAGCAGTGGTCGCGGCGCGGGCGTACGCCGCCCAAGCCTCCCCCCTCGCCGCCCTCCCCTCCCTCCCCGGNNNNNNNNNNTTTTGTATGCCGGCACTGCGGTATCGGTTTCGCGAGAGAGAAGGCGCTGCAGTCACATGCTAGGGTGCACGGCGGCGACTCCCCCGTGGAGTGCAGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTCGCGTCGCACGCGGCGCAGCGCCACCCGCACCTGCCGCACCTACCGCGCTCCATTAAACACGACCCGTACGATGATAACTCGGGAGACGACATGGACTTCTGCCTGTCGCCACTAGCGCACAGCGGCAGCGAGCGCGAGCGCACGGTGTACGACACGGTGCGCGGGCCCGAGCTGTTCTGCCAGGACTGCGGCGTGGCCTTCCAGCGCGCCGACCTGCTGCGTCGGCACGTCGCCGCCGCGCACAGCTACAAGCGGCACGACAGCACCAGCAGCACCTGGGAGCAGGAGCACACGTGCGACGTGTGCGGTGAGAGCTGTCCGGATGCTTTAACATTATTGGCTCACGCAGAAAGACATGCTGAACGACATCGACCCAATGCGCCAAGATTAAAAAGAATGTCCAAAGGCCGTAACACAACTACATCTTCTCTGAATTCCAGACAATTCCCATGCAGAGAGTGTGGCAAAGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACATCCGCATCCACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGCTGGAAGGCGTTCGCGGACGGCGGCACGCTGCGCAAGCACGAGCGGATACACACCGGTGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCCTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCGGCGCCCGACCGCCGCGCTAACGgtgGTTATCAATACTCCTGCGCTGTGTGTGGAAGACCCATGCTGACAAGCGCGGAGCTAGTGCAGCACCTTATACAGCACTGTGATGAAAACACCGCCTTGAAAAGACAGCCTCAGTCTGGGCCAAGAAAGTACAAACGGCGGCGGAAAATAAAGAACGAGCCAGCGATGTCCCCCGGAGGGGAGTGGGGCGGGTCACGGTCGCCGGCGCGGTCGCGGTCACGGTCGCCGCCCTCGCCGCGCtcccccgcgccgcccgcgcgccgccgccgccgcgccgcgcccccgccgccgcgccgcccgcgcatGATACACACGTCGGAGGAGAGCCGCGCGCGCACTAAGCAGGTGCGGTCCCGGCGGCCGCCGCGGCACCCGGCGGACGACCTGCGCGCCATCGCGCCGCGCTCGCTGTCCCCCTCCCCCTCGCCGCTGCCGTCGCCCCCGACGCCCGCGCCCGCCTCCCCGCCCTCTCCCTCGTCGCCGCCCTCCCCCGCGCACTCCCCGCACCACGCACACGACGAGGAACCGTTGAAGTGCGAATTGTGTTCATTAGAATTCCCGCGCAGAGATGCCTTATTACTGCACGTCCCGGTGCATATATGA
Protein Sequence: MEGEQFHLRWEEADIKPNIEVTEEVICGLENVQCVPYSNMTAEELIANADNIAAENLVFLSQDVNYTESAELAADPSVECVTEEVITDDWVISGEQERVEVPLEHLAQPVQNVKVENDLDVPLPTDQDEYTAMRPFPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFIPDNEPIEYHNNEEEIHNASLLKPRKKRGRRKKKPEPVENGVPDVHMTSARTQQWSRRGRTPPKPPPSPPSPPSPXXXXFVCRHCGIGFAREKALQSHARVHGGDSPVECSECGELCWSREALASHAAQRHPHLPHLPRSIKHDPYDDNSGDDMDFCLSPLAHSGSERERTVYDTVRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSTSSTWEQEHTCDVCGESCPDALTLLAHAERHAERHRPNAPRLKRMSKGRNTTTSSLNSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGYQYSCAVCGRPMLTSAELVQHLIQHCDENTALKRQPQSGPRKYKRRRKIKNEPAMSPGGEWGGSRSPARSRSRSPPSPRSPAPPARRRRRAAPPPPRRPRMIHTSEESRARTKQVRSRRPPRHPADDLRAIAPRSLSPSPSPLPSPPTPAPASPPSPSSPPSPAHSPHHAHDEEPLKCELCSLEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358861; iTF_00771266; iTF_00115160;
90% Identity: iTF_00358861;
80% Identity: -