Zces015687.1
Basic Information
- Insect
- Zerene cesonia
- Gene Symbol
- -
- Assembly
- GCA_012273895.1
- Location
- JAAMXH010000035.1:1458247-1460905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.5 1.6e+02 2.9 1.4 2 21 19 38 18 41 0.88 2 20 0.006 0.39 11.1 1.6 1 23 63 86 63 86 0.96 3 20 4.4e-05 0.0029 17.8 1.1 1 23 91 114 91 114 0.93 4 20 4.1 2.7e+02 2.2 4.6 1 23 119 142 119 142 0.94 5 20 5.6 3.7e+02 1.8 0.3 1 8 146 153 146 155 0.88 6 20 0.012 0.79 10.2 2.5 1 23 189 211 189 211 0.95 7 20 0.11 7.1 7.2 0.1 3 23 240 261 238 261 0.91 8 20 0.00015 0.0099 16.1 0.5 2 23 282 304 281 304 0.95 9 20 5.4e-05 0.0035 17.6 0.2 1 23 309 332 309 332 0.96 10 20 0.055 3.6 8.1 8.6 1 23 337 360 337 360 0.97 11 20 0.00038 0.025 14.9 1.6 2 23 363 385 363 385 0.97 12 20 1 68 4.1 2.0 2 22 392 412 391 412 0.93 13 20 0.0059 0.39 11.1 0.5 1 23 464 487 464 487 0.95 14 20 0.32 21 5.7 0.2 3 23 561 582 559 582 0.93 15 20 3.1e-05 0.0021 18.3 0.2 3 23 589 610 588 610 0.94 16 20 0.14 9.5 6.8 6.2 2 23 615 637 614 637 0.93 17 20 0.00042 0.027 14.8 1.4 1 23 642 665 642 665 0.97 18 20 6e-06 0.0004 20.5 5.0 1 23 669 692 669 692 0.98 19 20 3e-05 0.002 18.3 0.2 2 23 699 720 698 720 0.96 20 20 0.0047 0.31 11.4 2.0 1 23 726 748 726 748 0.97
Sequence Information
- Coding Sequence
- ATGCAATTATATCAACGTCACAATAGTACGATTAAAGTCGATACTTCCTCTATATCTTGTAAAATATGctgcatacattttaaagaCGTGAAATCCCTGGTGGATCATTTAGGTGatgatcataaaaataactacaatAGCAATATTAAAGTCTTCTTAGATCCATATCAATTGATCCAAGACGCGTTTCCCTGCACCAGCTGCGGCGAGTCGTTTAAGATGGCGCCGAATTTACGATGCCATGAGCGACGTTATCATAGCAATGAATCCTATAAATGCAACATGTGCGACTTAGCATTTACTACAAGggacaaattatataaacacaaagCCCAGGTGcacgatattaaaatacataaatgctCAAGGTGTCAAGAGAGGTTTCTCTCTTTGTATCGCATGCGAAGACATAAGCTAAAAGTTCACAATTTGGGGCATCAATGCTCGCATTGTGATGAAAACGCGGATGGACCATGCGAGCACTTTACCTCTGAGAGACGCAggaaaaatatgcaaatactCTTCAACAGCACAACAATAATGCCTTTCAAATGGAAAGGCCGATTCTTGTGTTTCTATTGCGCTAAAGATTACACGGTTTATTCGGAATTCAAAAAGCACACTAAATCACACGGTCTCTGCACGACCAAGGACTATTCTTTGAAAATTATCAAAGGCAGCCACATTGAGATCAAATTGGACATTTCGGACATGAATTGCGAGATTTGCAGTGAACCGTTCAACAGCTTTGACGAAATTGTCAATCATTTAATTGGAAAACACGATATGGACTatgataaaacaattgatataCCTTTCACTGAATACAGATTAGTGGATATGAAATGTCAGTTTTGTGGCAAGGAGTTCTCTTATTTTGGATATCTTATTAGTCATTTGAAGTTAGCTCATCCACAGAACAATTTTATATGCGACGATTGTGGCGCGACGTTCAATATGAAACGTGATTTGGCggctcatttaaaatattttcacagaGCGGGCGGGTATCCGTGCGAGCACTGTTCTGAAATCTGCCATTCGCACTATGATCTGAAGAAACATCAAAATAGTTATCATTTTAGAAGGTGTACTTTGTGCGACTCCAGCTTTGCGTCCTACCATTTGTTGCAGAAGCATATTCAGAGTGAACACGCTAaagttaaaaacaacaaatgcCCATATTGCGCAAAGAAGTGCCATTCGTCGCTGGGCGTCAAATTGCACATAAAAACGTGCAAACTGAAAGTGACCCTGAAACCTCAGGTGCCACAACCGTCGGAAAATTTTATCGAGCCGAAGAAAAAGCAGAACATATTGCAGATCAGACAAAACATCCTCAGTGTGTTGAACATGTCCACCGTGGTGCCATTTAAATTCTTCGGCAAGTTTTCCTGTTTCTACTGCTCTATAAAGTTTGCTGAATTCGATGATCTCAAAACTCATACAGCTGTGGAACATCCTGTTTGCGATATAACCTCCAAATGTATGAAGAAGTGCAAAGGCGAAAGGACCACAGTGAAGGTTGATATATCGTCTCTGTCGTGTAAGCTTTGCTGCCAATCAATGGACAAGCTGGAGGTCCTGATCGACCATTTAATATCAAAGCACAACGCGCCCTACGATAAGACAATGAAGAGTTGCTTTGAACCGTTTCGTATAGTGAAAGACAACATCGCCTGTATGTCCTGCCCGAGCGTGTTCAGATATTTCGCAACTCTATTGCGCCATAGCAATTCGGAACACAGCAACAACAGCCGCATATGCGACTTTTGCGGGCGCAGCTTCAAAAACGTGACCAATTTGAACGTGCACATATCGTACGCGCACACGGGCGCTTGCGAGTGCGCCATTTGCGGCAACCAGTACAAGAATCAGTGGTGTCTGAACCGGCACAAGGCGAAGTGCCACAACGCGAAGGACTTCAAATGCCCAAATTGCCCTGAACTGTTCCCGTCCCAATATCACCGGCAGAAGCATTTGATAAAGGTCCACGATATAGGCCACAAATGCACGTACTGCGGTCGGATGTTCACGAGGAACTCCTTTATGAAGGATCACATAAGGAGGACGCATTTGAAGGAGAAGAATGTGGAGTGCTCGATTTGCGGCGAAAAATTCTTCGACAACTATTTGCTCAGGATGCACATGGTGAAACACGAAGGGGTGAGGAAGTTTAGTTGCGACGTGTGTTGCAAGTCGTTTCTGCGCAGGAGCAACCTGGCCTCGCACATGGGTATGCACAAAAAATACGGACACGTTGGTGCATTATAG
- Protein Sequence
- MQLYQRHNSTIKVDTSSISCKICCIHFKDVKSLVDHLGDDHKNNYNSNIKVFLDPYQLIQDAFPCTSCGESFKMAPNLRCHERRYHSNESYKCNMCDLAFTTRDKLYKHKAQVHDIKIHKCSRCQERFLSLYRMRRHKLKVHNLGHQCSHCDENADGPCEHFTSERRRKNMQILFNSTTIMPFKWKGRFLCFYCAKDYTVYSEFKKHTKSHGLCTTKDYSLKIIKGSHIEIKLDISDMNCEICSEPFNSFDEIVNHLIGKHDMDYDKTIDIPFTEYRLVDMKCQFCGKEFSYFGYLISHLKLAHPQNNFICDDCGATFNMKRDLAAHLKYFHRAGGYPCEHCSEICHSHYDLKKHQNSYHFRRCTLCDSSFASYHLLQKHIQSEHAKVKNNKCPYCAKKCHSSLGVKLHIKTCKLKVTLKPQVPQPSENFIEPKKKQNILQIRQNILSVLNMSTVVPFKFFGKFSCFYCSIKFAEFDDLKTHTAVEHPVCDITSKCMKKCKGERTTVKVDISSLSCKLCCQSMDKLEVLIDHLISKHNAPYDKTMKSCFEPFRIVKDNIACMSCPSVFRYFATLLRHSNSEHSNNSRICDFCGRSFKNVTNLNVHISYAHTGACECAICGNQYKNQWCLNRHKAKCHNAKDFKCPNCPELFPSQYHRQKHLIKVHDIGHKCTYCGRMFTRNSFMKDHIRRTHLKEKNVECSICGEKFFDNYLLRMHMVKHEGVRKFSCDVCCKSFLRRSNLASHMGMHKKYGHVGAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358843;
- 90% Identity
- -
- 80% Identity
- -