Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_012273895.1
Location
CM022626.1:3224491-3227489[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3.3 3.4e+03 -1.9 0.1 36 43 85 92 84 94 0.86
2 5 1.1e-09 1.1e-06 28.5 0.1 1 45 261 307 261 308 0.94
3 5 5.2e-10 5.2e-07 29.5 0.4 3 44 316 361 315 363 0.94
4 5 2.1e-09 2.1e-06 27.6 0.0 1 43 367 409 367 411 0.97
5 5 1.2e-08 1.2e-05 25.2 0.2 4 41 420 459 419 468 0.81

Sequence Information

Coding Sequence
ATGACTGAGTTCGATTCCGACTTTGAGAGCGATTTAGAAGCCGAATTAGAAGATCTCAGAAGGCTTACGGCAGCATTAGAAGAAGATGAACCTGGTCCCAGTAGAGGAACGTCTCAGTTTTCGGTTCATACATCACAATCCACCTTCAATTCTGGACAAGatgatttcataaatattgacaTTGCCATTGcacttaataaattgtatgacGAAAAAATGCAAGGTCTCGAAAAAGTGCTTATAAATCGTTTAAATCAATGTAGACAGCGATTAAGAGAAATTCAAAATACtgatattttagataaaaccgaaagaccaaataacaataactttcGATACATTAACTGTGGTAAACCGTATTTCAAGGATATGTTTGGTTTTCCTGCACCAGATAATGAAGATACATTGCTCAGAGCTAAAGTAGGAATGTATGATTTTTCGTCTATACAATCTGTTCCTGGTTGGACCATCAAAGATAAGAATCTATTCACTAAATGCATTCTTAAATTatcgaaagaaataaaaattagggAATTAAAGTCTGAACTTGCACAATTACACAGGTCAAATGTAGACAAATCAAAAAACAGCAAGGAGAGAAaagaaatttctaaaataaaacataaaattaatagtattGATAAAATGCCACTAAGAGCATTAGCTTTACCAATTGATGAAGACTATGATTGGGATTatgttgcaaataaatttaatcatagaCACAAACCTCAAGAATTTAGAGCATTATGGAAACTATTTTTACAccctacaataaataaatctccTTGGTGTAAAAAGGAGGATGCAACactacaaaaaattgtaaaggAGAAACAATATCAAGACTGGGATGCTATAGCTAAAGAATTAAATACAGGAAGAACAGCCTATCAGTGTTTTGTTTACTTCCGAACTAACATGGGCaacacttttattttacataaatggaCAAAAGACGAggaagaatatttaaaaaggctaattgaatattatagaGAGGATAATTATATTCCCTGGTCAAGAATAGCAGCTTCAATGGAGAATAGGactaaaattcaaatttacaataaatacatgagGCTGACAGAACTTAGAAAAGGTAGATTTCTACCTGAAGAAGATGCCGTCATCCTTACTTTTGCAGAAAAATATGGTACTGATTTCAAAAGAATGACATGGTTTCTACCCGGTCGGTCAATCGCTCAGTGCCGTGTTCGATATCATGTATTATCAAAGAAAAAGGTCTCTATACAGTGGACTGTTGAAgaggataaaaaattaatacaacttATGTCAAATCAAGATAGTCACAAGAATTATTCAagtataacaaaacattttccaGGAAAGGACAGGATACACATACGGTCTAGGCATATGATATTAGAGCGTTGGATGATGAGTCATCCCAATTTAGATATTGATAAAGCTCCAAGAAGAGGACCTAGACGACTTAATCGTGGCAATTTgactgataatttaaataaggcCATTGAAAATCTGAAAACAAGAGTGAAATCAGATTTACAAAAGGATAAATCAAAAGTGGTTACAATGCATTCATCAGAGCAAAACATTGATGATGCTATAATAGACTTATTTGTAAAACACCAAGTAAAAACCGaggaaacaaataaacttaagaTAAGTGAATTAGATATTGCAGACGAACCAAGGCAAGCGGAAGTGCCCAAAGAAGCTAGAGAGGTGGTTAATGTCTCTAATTTACAACAAGTTCTAATTTTGCttaaagcaaaattaaataaagataagttTTTGCAAAGTAGTCTGGCTAATAAGTATCCACAATTACTTGTACCagatctaaatatttataaaattgttaaaaaatcttattcaaaaaaggaaaatgGGACAAATACTGCAAACTTACAAAGAATCCCAGATGTATTTGGTAACAATAGTTTAGGTCGATTGCAATATGTCCTACCACCAAATTATGCAACTATTACAGGATGTAGAAAATTGATACAATATGTTTCCGTTGAAAGCGAAAATGTTCCTACAAAAAGTTTAAACCGAAACATTCATATCAATTCTATATTGAGAGACCAAATGTGTTTAATGATAGAACGAtttcatactttatttatgtggCCTATGATATTATCAAATATGCCACCAAATGCATCAACAGCAAGAAATTCTGCATCACCCATAATGTATCAGCCTCCAGAAAAAAAGTTTTGCAAAACTGCATATCAGAAAGAAGATTATGCTTTAGCAATAcccaaattaaatgaaaatgatattGTTAATGATGTTATTGATTtggaagataataaaaataatgatgtaaCTTTAGAACAACACTACAGTTTTGATTAA
Protein Sequence
MTEFDSDFESDLEAELEDLRRLTAALEEDEPGPSRGTSQFSVHTSQSTFNSGQDDFINIDIAIALNKLYDEKMQGLEKVLINRLNQCRQRLREIQNTDILDKTERPNNNNFRYINCGKPYFKDMFGFPAPDNEDTLLRAKVGMYDFSSIQSVPGWTIKDKNLFTKCILKLSKEIKIRELKSELAQLHRSNVDKSKNSKERKEISKIKHKINSIDKMPLRALALPIDEDYDWDYVANKFNHRHKPQEFRALWKLFLHPTINKSPWCKKEDATLQKIVKEKQYQDWDAIAKELNTGRTAYQCFVYFRTNMGNTFILHKWTKDEEEYLKRLIEYYREDNYIPWSRIAASMENRTKIQIYNKYMRLTELRKGRFLPEEDAVILTFAEKYGTDFKRMTWFLPGRSIAQCRVRYHVLSKKKVSIQWTVEEDKKLIQLMSNQDSHKNYSSITKHFPGKDRIHIRSRHMILERWMMSHPNLDIDKAPRRGPRRLNRGNLTDNLNKAIENLKTRVKSDLQKDKSKVVTMHSSEQNIDDAIIDLFVKHQVKTEETNKLKISELDIADEPRQAEVPKEAREVVNVSNLQQVLILLKAKLNKDKFLQSSLANKYPQLLVPDLNIYKIVKKSYSKKENGTNTANLQRIPDVFGNNSLGRLQYVLPPNYATITGCRKLIQYVSVESENVPTKSLNRNIHINSILRDQMCLMIERFHTLFMWPMILSNMPPNASTARNSASPIMYQPPEKKFCKTAYQKEDYALAIPKLNENDIVNDVIDLEDNKNNDVTLEQHYSFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-