Zhep003966.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439379.1:28874305-28883001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00086 0.047 14.6 0.8 1 23 144 167 144 167 0.98 2 20 0.019 1 10.3 1.1 1 13 173 185 173 187 0.92 3 20 0.019 1 10.3 1.1 1 13 206 218 206 220 0.92 4 20 0.019 1 10.3 1.1 1 13 239 251 239 253 0.92 5 20 0.019 1 10.3 1.1 1 13 272 284 272 286 0.92 6 20 0.019 1 10.3 1.1 1 13 305 317 305 319 0.92 7 20 0.019 1 10.3 1.1 1 13 338 350 338 352 0.92 8 20 0.019 1 10.3 1.1 1 13 371 383 371 385 0.92 9 20 0.051 2.8 9.0 1.5 1 13 404 416 404 418 0.91 10 20 0.019 1 10.3 1.1 1 13 437 449 437 451 0.92 11 20 0.019 1 10.3 1.1 1 13 470 482 470 484 0.92 12 20 0.019 1 10.3 1.1 1 13 503 515 503 517 0.92 13 20 0.012 0.64 11.0 0.6 1 13 536 548 536 552 0.92 14 20 0.012 0.64 11.0 0.6 1 13 569 581 569 585 0.92 15 20 0.012 0.64 11.0 0.6 1 13 602 614 602 618 0.92 16 20 0.012 0.64 11.0 0.6 1 13 635 647 635 651 0.92 17 20 0.012 0.64 11.0 0.6 1 13 668 680 668 684 0.92 18 20 0.012 0.64 11.0 0.6 1 13 701 713 701 717 0.92 19 20 0.019 1 10.3 1.1 1 13 734 746 734 748 0.92 20 20 0.046 2.5 9.1 0.5 1 13 767 779 767 781 0.89
Sequence Information
- Coding Sequence
- ATGGAGAAGATGCTGGAGACGGCATCGGTGAAGTCTGTCTTGAGAAACTGTGACGAGATGATTCACTCTCGTAGGAGAATAGACTTCGCGGCGATGTTGAAGGTGAAGATTGGCTATCCGTTGTGGTGGTCCGTCTGTTGGGCTCCTCGCTGTCGTTGTTTCGAATGCTATGTTCTCCAGCATCGGCTTCTGATGTGCGTCGGCGCCTTCCAGAGAGTGGTCGAAGGGAATATCTTCTATTGCGGTCCGTTCGAGTGCCTCCAGGCGTCCACGCTGGTCGCCGACGGCCTCTGCCACCAGATCTTCTTCTCTTGCTGCGACTACTCCATCCACTTTCGGGACGAGCACACGCGCCGCCGGAAAGCAATCAAGTGCCAGGTTTGCGAGAAAGCACTTGCGTCATCCATCGGCGAGGAGGCCACGTCGCCATACCCCTGCCACGTATGCGGGTACGGGTGCGCGACGCGGGACGAGCAGACCGAGCACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTGTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTGTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGCAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGCAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGCAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGCAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTAAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGCAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGCAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGCAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGCAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGTACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGTACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGTACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGTACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGTACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGTACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTCAGCAGACGGGACGAGCTGACCGAGCACATCAACACATCAACACCGCGCACGTGAAGCTGAAGCCCTATCAGTGCAGCGTCTGCCACAAGCGGTTCACTGAGCAGgctgatgatgatgatgtcacgGAAGTTGAGAAGAAGGTGCCTGAACTCCTCAGCGTGGAAACCAAACTGACGTCTTTGGAGGTCGAGATATCTGAGCTAAAACAGGAGTTGGCAGCTAAGGATCAATGGTCTCGACTTAACAATGTCGAAATAAAAGGTGTCCCGATGAGCAAAAATGAAAACTTATTTGTTGTTGTGGAGAAAATCAGCAAGGCAGTTAACTACGCATTCCCGAAGACATGCATCAACTACATCTCCAGAGTCCCGATCCAAAACGCAAAAGAAAAATCCATAATTGTGAGCTTCATCAACCGGTACGTGAAGGAGGATTTTGTCGCTTCGGCCCGTATCAAGAAATCACTAAAGGCCAATGAAATCGGGTTTGCCGATGCAACCCATAATGTCTACGTCAACGACCACTTGACACCTGACATGAAAAAATTGCTGACACTGACGAAATCGACCTTAAAAGCTAAAGGATACCTATATGTGTGGGTGAAATTTGGAAAAATTCATGTAAGGAAAAACGATTCTACACAAGTTTGCGTTGTTCATAGGGCGGCGGATTTAAACAAGCTGTTCTAG
- Protein Sequence
- MEKMLETASVKSVLRNCDEMIHSRRRIDFAAMLKVKIGYPLWWSVCWAPRCRCFECYVLQHRLLMCVGAFQRVVEGNIFYCGPFECLQASTLVADGLCHQIFFSCCDYSIHFRDEHTRRRKAIKCQVCEKALASSIGEEATSPYPCHVCGYGCATRDEQTEHINTAHVKLKPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLQPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLQPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLQPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLQPYQCSVCHKRFTKQTGRADRAHQHINTAHVKLQPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLQPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLQPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLQPYQCSVCHKRFTQQTGRADRVHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRVHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRVHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRVHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRVHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRVHQHINTAHVKLKPYQCSVCHKRFTQQTGRADRAHQHINTAHVKLKPYQCSVCHKRFTEQADDDDVTEVEKKVPELLSVETKLTSLEVEISELKQELAAKDQWSRLNNVEIKGVPMSKNENLFVVVEKISKAVNYAFPKTCINYISRVPIQNAKEKSIIVSFINRYVKEDFVASARIKKSLKANEIGFADATHNVYVNDHLTPDMKKLLTLTKSTLKAKGYLYVWVKFGKIHVRKNDSTQVCVVHRAADLNKLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -