Zhep012373.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439385.1:21646028-21653942[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.024 1.3 10.0 0.9 2 23 359 381 358 381 0.92 2 13 0.004 0.22 12.5 2.5 2 20 388 406 387 408 0.92 3 13 0.22 12 7.0 0.4 1 20 414 433 414 435 0.94 4 13 0.44 24 6.0 0.1 3 23 445 466 443 466 0.95 5 13 0.01 0.55 11.2 0.8 2 21 484 503 484 504 0.95 6 13 0.15 8.1 7.5 2.3 3 23 520 537 518 537 0.79 7 13 0.00017 0.0096 16.7 3.9 1 23 544 567 544 567 0.94 8 13 0.7 38 5.4 1.0 2 23 573 593 572 593 0.94 9 13 0.023 1.2 10.1 2.8 2 23 614 636 614 636 0.96 10 13 2.4e-05 0.0013 19.4 0.4 1 23 642 664 642 664 0.92 11 13 0.00093 0.051 14.5 2.4 1 23 671 694 671 694 0.97 12 13 8.8e-05 0.0048 17.7 0.5 1 23 702 725 702 725 0.95 13 13 0.27 15 6.7 0.0 2 23 730 754 730 754 0.95
Sequence Information
- Coding Sequence
- ATGGCATTAAATAGATGTGCAATGAAGAACTGCCACGTGGAAGGCTCCTACAACAATGTTGTGAAGTTCTACAAGATACCACCACAACCAGATCGAGCCAAACAATGGTTACGGTACTGCAGGAAAGGAACTAGATTGAAAACCGGCAGAGTATGCTCCAAGCATTTCCTAGCAGGAGACTTCACAGACACAGCTGAACTGAATCCGCTTGCCGTGCCAACACCCTGCTATGACAGACAACTCAGCCTAAACTGCTCTGTTCCACTGAAGAGGCTGGACTTGCTTCAAATGGGTGTGAAGAAAGAGCTCGATATAGAAGTTGTTTGGACTGGGTATAACGTAACAAAAGATGACGATGAAAACAACGCAGAAAGCAGCAATATGCCTCGGCAGCACTTGGTGCTTAACGCGCTGTACGGCGGCATGTGCTGCTGTGTGTGTCTGCGTCAGGACACCGCGGGCAGCGGCATGCAAGCAGCACTGGAGCTCGGGAAGGGCTTGTCGCTCTCACTGCACGAAATTCTGGAGGTGGTGCTGCACGAAAAGgtATCGGATCTAGCCGAAACTAATTTCCTTTGCTCAAAGTGTACAAATGCAACAATCAGAGcctatatttttatacaaagCGCCAAAGATACGGCGGACACGCTCACGAGACACCTCGGCGAGCTGCGCGGGCATGTGGACGACGCGCTGGAAAACTTACACAATGGATGTGAATTTGAGAAAATCGTTTTATCTGCTGAACATCAAAAAGATAAAGTGGAACCGAAAAAAGATACAGAAGCGACGGAAGACTTATTAAGCGACGTTCCAGAAGTGGATACCCAGTCAGATGATTATTTTGAACGGGAGGACACAGAAGTATGGGTCTCTGCGACACGCCCCACGGGACGTCCGCAGGGCCGCCCCCGGCTGACCGCACAACGCGCGGGCCGCCCCGGCCGCGCCGTGCCGCCCACGGCGCGTCGCCCCTCGGATTCGTGCGTCATGTGCGGTACCGCCCCTTGCGTGCACGCGCGACACTTGCGGTGGTGGCGCGAGCGGcggggggcggcgggggcggcgcaGGTGCCTTGTTCTGACTGTGACTACATGACGCGTGACAAGCATAGCTTCCTGGAGCACGTGTCGCTCAAGCACATCCGCGCGCCGCTGTGGCGCTGCGACAAGTGCGACAAGACATGCTTCTCCAAGAAAAGTCTGACCAACCACGTCGAGAGATGCTTCATGAACTTATTTATATGCGCATACTGCGACGGGGAATTTCATCAAAAGCGGAGCTTCGTGAGCCATATAACTTGGTGTCAGTACGAGAGGAGACCTTTCGGATGTGAACTGTGTGCCGCGACGTTCGCCGATGAAAGCGATGTTCTTAAACATAAAGAGAAGAGGCACGTTCCTGTCGATCGACAAATGAATGAATTTGAGACCATACCGCGCTCCGAATCCTGCAAAGTATGTCTCAAGAAATTTACCAACATCGATGATTTTGTCAAACACAGAAGACAATGCAAAGCGAAGCCTGACGAACATTATTCGCGATCTCCCAACGTGTGCCCCATGTGCGGCAAGCGAGTGCGCCATTATCAGAGACACCTGAAGACACACAACAAAACCAAAGACTCTTATCTGTGCGAGACGTGTAGGAAACATTTTAGATCCGCCCGCCATCTGCAACGACACATAGAATCCGCACACTCAAATGTTAAAATCACCTGCGAAGTCTGTGGTGTATTACTTAAAAAGTCCAccatgaaaaaacataaaagaaGACACGAAGCAAACTGGTCCGTAGTTCGAGAAGAGCTTAGAAAAAGGAAAGTAGCCCGAATGCGAAAATGTACTCAATGCGATTATTCTACTTCAGGCAAAGAATGCATGGAGAAACACATGAACCTGTATCACAAGAAAATCTATCCGTATCCTTGCGAGATATGCTCGAAGCGTTTCGCGAGCAAAAGTTCGCTGAAGTTGCACCTTCCGACCCACGATCCCGCGCGAGTCATGCACAAGTGCTCAGAGTGTAGCAAGCAGTACCGCACCCGGAAAGGCCTGCTCAGCCATGAGCGGATCGTACATACACACAGCAACGAGCGGCCCCACGTGTGTGAGGAGTGCGGAGCCAGCTTTGTGTCTCGCTCGGCGCTGAACTACCACCGCGGGACCCGGCACGCGGCGCCCGAGCGCTGCCCGGTTGAGGGCTGCGGGCGGCTGCTGGGTAGCTGGACGGCGGTCAAGAAGCACCTGCGGCAGGTTCACTGGAAGGTCTCGGGCCCCTTCGACCCGTGGCAGGTGGAGGGGCTGTCGCCCCGCGACGCCGAGCGCTTCGCCGACCAACTCCGCTCCGGTTACAAGGGCCCCACACACCGCCTGCTGGCTCCGGGCCAGGACACAGTCCTCCACGCCCGCCGCGGGCCCGCGCCCAAACTGAAGGGACAGGACGAGTGA
- Protein Sequence
- MALNRCAMKNCHVEGSYNNVVKFYKIPPQPDRAKQWLRYCRKGTRLKTGRVCSKHFLAGDFTDTAELNPLAVPTPCYDRQLSLNCSVPLKRLDLLQMGVKKELDIEVVWTGYNVTKDDDENNAESSNMPRQHLVLNALYGGMCCCVCLRQDTAGSGMQAALELGKGLSLSLHEILEVVLHEKVSDLAETNFLCSKCTNATIRAYIFIQSAKDTADTLTRHLGELRGHVDDALENLHNGCEFEKIVLSAEHQKDKVEPKKDTEATEDLLSDVPEVDTQSDDYFEREDTEVWVSATRPTGRPQGRPRLTAQRAGRPGRAVPPTARRPSDSCVMCGTAPCVHARHLRWWRERRGAAGAAQVPCSDCDYMTRDKHSFLEHVSLKHIRAPLWRCDKCDKTCFSKKSLTNHVERCFMNLFICAYCDGEFHQKRSFVSHITWCQYERRPFGCELCAATFADESDVLKHKEKRHVPVDRQMNEFETIPRSESCKVCLKKFTNIDDFVKHRRQCKAKPDEHYSRSPNVCPMCGKRVRHYQRHLKTHNKTKDSYLCETCRKHFRSARHLQRHIESAHSNVKITCEVCGVLLKKSTMKKHKRRHEANWSVVREELRKRKVARMRKCTQCDYSTSGKECMEKHMNLYHKKIYPYPCEICSKRFASKSSLKLHLPTHDPARVMHKCSECSKQYRTRKGLLSHERIVHTHSNERPHVCEECGASFVSRSALNYHRGTRHAAPERCPVEGCGRLLGSWTAVKKHLRQVHWKVSGPFDPWQVEGLSPRDAERFADQLRSGYKGPTHRLLAPGQDTVLHARRGPAPKLKGQDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -