Zhep013232.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439386.1:14717852-14735917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.28 15 6.6 0.9 1 23 4 27 4 27 0.95 2 21 0.0051 0.28 12.1 0.0 2 20 72 90 71 91 0.94 3 21 0.15 8.2 7.5 3.2 2 23 162 183 161 183 0.95 4 21 0.00056 0.031 15.1 1.5 2 23 188 210 187 210 0.90 5 21 6.5 3.5e+02 2.4 0.3 1 21 214 234 214 235 0.92 6 21 0.066 3.6 8.6 1.7 1 23 272 295 272 295 0.87 7 21 2.3e-05 0.0013 19.5 0.4 2 23 300 321 299 321 0.97 8 21 0.45 24 6.0 2.2 2 23 448 469 447 469 0.94 9 21 0.00066 0.036 14.9 1.2 2 23 474 496 473 496 0.90 10 21 2.3 1.3e+02 3.8 0.4 1 21 500 520 500 521 0.93 11 21 0.2 11 7.1 0.4 1 23 528 551 528 551 0.93 12 21 0.066 3.6 8.6 1.7 1 23 558 581 558 581 0.87 13 21 0.00068 0.037 14.9 3.7 2 23 586 607 585 607 0.96 14 21 0.54 30 5.7 0.4 2 23 644 666 643 666 0.93 15 21 0.068 3.7 8.6 3.3 2 23 734 755 733 755 0.95 16 21 0.00073 0.04 14.8 1.5 2 23 760 782 759 782 0.90 17 21 6.5 3.5e+02 2.4 0.3 1 21 786 806 786 807 0.92 18 21 0.038 2.1 9.4 2.4 1 23 844 867 844 867 0.89 19 21 0.0005 0.028 15.3 2.7 2 23 872 893 871 893 0.95 20 21 0.012 0.63 11.0 0.2 1 23 899 921 899 921 0.97 21 21 0.081 4.4 8.3 0.8 3 23 929 949 927 950 0.94
Sequence Information
- Coding Sequence
- ATGAAACTTCACTTTTGCTCGGTTTGCCCTTACACTGCCGTAGTACAGGAAAGGTTGAAGTTGCACCTGAAGCGAATGCACCCAGACGTGTTTGAGACGGAGTTTGGCTTTGACCAAGATGATGAAGGATTTGGCAAGATGCGAGAAAGCGCGACACTGATATTGAAATACTCCACTGCATATCCGTTCAAGGTGGCCAGGAACGCAAAAATCCAGTGTGTGTTCTGTCCTGAATCCTTTGAAGACCCTGACGATTTCAGAAGACACGTCGACTGTGTACACTATGGTTTCGATAGATCACGTGCGCTTGACGATAGTACATGCGTACGCATAGACATCACAGACCTACGTTGTAGGATGTGTGCGACTTCACACGACACGCTGGCGTCCGTGGCGGAGCATCTGGCATCACAGCATGCCCTCGAAGTCGATCCGACCATCAAACTGAATCTGCTCCCCATAAAATTGGAGAAAGACTCTCTGGTCTGTGGCACTTGCGGCAGAGCCTTCACTTGTCACAGGACGCTGTCAAAGCACTTGTACGTGCACTCCCTTGGCCTAATATGTCACGTTTGCGGCAAgcaatttcaaacaaaaacaggtTTAAAGAATCACACGGCCGAGAAGCATCTCCTCACATTCAGATGCATACAGTGCAAACAGCAGTTTGTTACTACTGATGAAAGGATTCAACACGTTCGCGAGAACAAATGTTGTTGGCCGTACGGTTGCGGGTCATGCAAAGAGCGATTCATGTTTTGGGAAGCGAGACAAATGCACTTGGAGCAAGTGCACGGGCAAGAGAAACTCAAATTCCCGTGCAAGGAATGCGGCCAAGTGTTTGAAAAGAGAATACAACTATACTTCCATTTTAAAAAGACGCATACGGATGATTTAAAGTGTAGTATCTGCGGACAAACTTTTAACCAAAAAAGAGATTTGGTCGATCATGGTAACACACACACTGGCTTAGCCCAAGATGAAGAATTTGGCAAGATGCGAGAAAGTGCGTCACTGGTATTGAAACACTCCACTGCGTATCCGTTCAAGGTGTCAAAGGACACGCATATCCAGTGTTTTTTCTGTCCTGATTTATTTGAAGAACCTGATGAGTTCAGAAGACACGTCGACTGTGTACATTATGGTATCGATAGGTCTTGTGCGTTTGACGATATTGCGTGCGTACGTATAGACATCACAGACCTGCGTTGTAGAATATGTGCGACTTCACACGACACGCTAGCGTCCGTGGCGGAGCACCTGGCATCACAGCATGACCTCGAAATCGATACGACCATCAATCTGAATCTGCTCCCCATAAAATTGGAGAAAGACTCTCTGGTCTGTGGCACTTGCGGCACAGTCTTCACTTGTCACAGGACGTTGTCAGAGCACTTGTACGTGCACTCCCTTGGTCTGATATGTCACGTTTGCGGCAAACAATTTCAAACGAAAGGCGGTTTGAAGACTCACACGGACGAGAAGCATCTCCTAACATTCAAATGCATACAGTGCAAACAGAAGTTTGTTACTACTGATGAAAGGATACAACACGTTCGCGAGAACAAATCTTGCTGGCCGTATCGCTGCGGGCAATGCAAGGAGCGATTCATGTTTTGGGAAGCGAAACAAATGCACTTGGAGCAAGTGCACGGGCAAGAGAAACTCACATTCCCGTGCAAGGAATGCGGGCAAGTGTTTGAAAAGAGAATACAACTATACTTCCATTTTAAAAAGACTCATACGGATGATTTAAAGTGTAATATTTGCGGACAAACTTTTCACCAAAAAAGAGACTTGGTCCATCACGAGAGCTCACACACTGGGTTAGCCCAAGATGAAGGATTTGGCAAGATTCGAGAAAGTGCGTCACTGATATTGAAACACTCCACTGCGTATCCGTTCAAGTTGTCAAAGGACAAGCATATCCAGTGTCTTTTCTGTCCTGATTTCTTTGAAAAACCTGATAAGTTCAGAAGACACGTCGACCGTGTTCATTACGGTATCGATAGGTCTTTGGCGTTTGACGACGGTGCGTTCGTACGTATAGACATCACAGACCTGGGTTGTAGAATGTGTGCGACTTCACACGACACACTAGCGTCCGTGGCGGAGCACCTGGCATCTCAGCATGCCCTCGAAGTCGATCCGACCATCAAACTGAATCTGCTTCCCGTAAAATTGGAGAAAGACTCTCTCGTCTGTGGCACGTGTGGTAAAGCCTTCACTTGCCACAGGACGCTGTCAAAGCACTTGTACGTGCACTCCCTTGGCCTAATATGTCACGTTTGCGGCAAACAATTTCAAACGAAAACCGGTTTGAAGACTCACACAGCCGAGAAGCATCTCCTAACATTCAGATGCATACAGTGCAAACAGCAGTTTGTTACTACTGATGAAAGGATCCAACACGTTCGTGAGAACAAATGTTGCTGGCCGTACGGCTGCGGGTCATGCAAGGAGCGATTCATGTTTTGGGAAGCGAAACAAATGCACTTGGAGCAAGTGCACGGGCAAGAAAAACTTACATTCCCGTGCAAGGAATGCGGGCAAGTGTTTGAAAAGAGAACACAACTATACTTCCATTTTAAAAAGACACATACGGATGATTGCAAATGTCAGGTTTGCGACGAAAGTTTTCGCACAAAAAAAGAACTGCTCGAACATGGCTTTACGCACACTGGCGAGAGGCCGTATAAGTGTCCGCTCTGCAATGCTACGTTTGCGAGGATAAGAATTTACGAAACACACATTAAAATCCACGACGATAGTAAGAAACTGGCCTGTCCCGGGTGCAGTAAACTGTTCGTGGAGAGatccaaaataaaaatgcacgTCAGCAAGCACCACCCAGACGTATTTGAGCAATGGGCCGTCACAATGaaatttaaaatgtaa
- Protein Sequence
- MKLHFCSVCPYTAVVQERLKLHLKRMHPDVFETEFGFDQDDEGFGKMRESATLILKYSTAYPFKVARNAKIQCVFCPESFEDPDDFRRHVDCVHYGFDRSRALDDSTCVRIDITDLRCRMCATSHDTLASVAEHLASQHALEVDPTIKLNLLPIKLEKDSLVCGTCGRAFTCHRTLSKHLYVHSLGLICHVCGKQFQTKTGLKNHTAEKHLLTFRCIQCKQQFVTTDERIQHVRENKCCWPYGCGSCKERFMFWEARQMHLEQVHGQEKLKFPCKECGQVFEKRIQLYFHFKKTHTDDLKCSICGQTFNQKRDLVDHGNTHTGLAQDEEFGKMRESASLVLKHSTAYPFKVSKDTHIQCFFCPDLFEEPDEFRRHVDCVHYGIDRSCAFDDIACVRIDITDLRCRICATSHDTLASVAEHLASQHDLEIDTTINLNLLPIKLEKDSLVCGTCGTVFTCHRTLSEHLYVHSLGLICHVCGKQFQTKGGLKTHTDEKHLLTFKCIQCKQKFVTTDERIQHVRENKSCWPYRCGQCKERFMFWEAKQMHLEQVHGQEKLTFPCKECGQVFEKRIQLYFHFKKTHTDDLKCNICGQTFHQKRDLVHHESSHTGLAQDEGFGKIRESASLILKHSTAYPFKLSKDKHIQCLFCPDFFEKPDKFRRHVDRVHYGIDRSLAFDDGAFVRIDITDLGCRMCATSHDTLASVAEHLASQHALEVDPTIKLNLLPVKLEKDSLVCGTCGKAFTCHRTLSKHLYVHSLGLICHVCGKQFQTKTGLKTHTAEKHLLTFRCIQCKQQFVTTDERIQHVRENKCCWPYGCGSCKERFMFWEAKQMHLEQVHGQEKLTFPCKECGQVFEKRTQLYFHFKKTHTDDCKCQVCDESFRTKKELLEHGFTHTGERPYKCPLCNATFARIRIYETHIKIHDDSKKLACPGCSKLFVERSKIKMHVSKHHPDVFEQWAVTMKFKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -