Zhep013209.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439386.1:14581585-14589821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.63 34 5.5 5.4 1 23 230 252 230 252 0.94 2 18 7.7 4.2e+02 2.1 0.3 3 23 279 299 277 299 0.90 3 18 9.5e-06 0.00052 20.7 0.7 1 23 320 342 320 342 0.99 4 18 0.0029 0.16 12.9 3.4 1 23 346 368 346 368 0.96 5 18 0.58 32 5.7 0.4 1 19 373 391 373 393 0.87 6 18 0.0011 0.06 14.2 2.3 1 23 432 455 432 455 0.98 7 18 0.0094 0.52 11.3 0.4 3 23 463 483 462 483 0.98 8 18 0.11 6.2 7.9 0.3 1 14 489 502 489 504 0.92 9 18 1.2 67 4.6 1.7 1 23 555 577 555 577 0.97 10 18 0.33 18 6.4 0.7 2 23 603 625 602 625 0.95 11 18 2.2 1.2e+02 3.8 3.8 2 23 645 666 644 666 0.94 12 18 9.6e-06 0.00053 20.7 2.7 1 23 670 692 670 692 0.98 13 18 0.4 22 6.2 1.7 1 19 697 715 697 720 0.88 14 18 0.45 25 6.0 2.6 2 23 728 750 728 750 0.94 15 18 2.8e-05 0.0015 19.2 0.6 1 23 757 780 757 780 0.97 16 18 8.6 4.7e+02 2.0 3.3 1 23 786 808 786 808 0.92 17 18 1.5e-06 8.3e-05 23.2 0.6 1 23 814 836 814 836 0.97 18 18 3.9e-06 0.00022 21.9 0.6 1 22 842 863 842 863 0.95
Sequence Information
- Coding Sequence
- ATGAATTCGACGGGTGATATGTTCCTGTGGCAGCCGCACGTGTGCCAGTGCTGTCTCACGCAGGGCTGCTATAAAGAACTGTCGTCCGAATACTTCTACATGGGCGAGAAGGAAATCTACGAGGAAATGCTCTTCAGCGTGTTCAATATTACAATAACACCAGAGCAGCGTGAGCAGCGCATCTGCGAAGTGTGCATACAGAAGCTGCGCGATGGATGCAGCTTCAAGAGGCAAGTTCTACGCAGCCAGCACACGCTAGCACAGAAAGGAGTTGCTGATAAAGCTAAAGTCGAGAGTGGCGCGCAAGAGTCTGAAGTGAAGTTAGAGCTGGAGCTCGTGCCTGATGACGATGGACATTTTGACgACGGCGAGTTGTTCGAGGATGCCGCCCCGTGCTCCGACGTGAAGCTGGAGGTGTCGGCGCTCCCCGCggcctgcgccggcgcacctGCTGCGGCCAGGAGGTCTGGAGCCGGTGCTGGACCCACGCGCAAGGGGCGCGAGAAGAAGAGCAAAGGGACAAGACAAGAGAAAGAAGTGATAGCAAGAACGGAACAGAGCCAGAAGTTGTCAAACAAACCGCCCAGAAGCTTGGAGCAGTTCCACCATGAGAAGAACCTGAAGATAGACACCAcacatctgatgaagaactcaAACCTATGCGCCTTCAAGTGGCATACAAACAAGTACCAATGTTTCTGCTGTAAGACCACCTTCACGGACATCGACGATCTGAAGACACACGCCTCGCACCACTCCTGGGCCGAAGTCATGAACCGGATACTACGGAACAACGCCGTCCAGTACCACAAAGTCGAAATCACTGGTCTAGCCTGCAAACTGTGCTCCGAGCCACAAGAAACCATAAGCAAACTAAAACAACACTTAACACTTCACAAAATCAATTTTAAAGAGGAGAAAGACTTGCTCATACCGTTCGTCATTAAAAAGGACGTGTTCCAATGCGCCGAGTGTCAGAAAACCTTCGTCACGTTCCCGAGCCTCAACATCCACATGAACAAGCATTTCCAGAACCACATCTGCGAGACGTGCGGCGCCGCCTTCATACACGACTCCAACTTGCGGGAACATCGGCACAGGCACGAGAACAAAAAATACAGCTGCGAGAAATGTAACACGGAGTTCGACAGTCTGTACAAGCGACAGCTACACGACGCGTCCGTTCACAAGACGAACGGAAGCCGCTTGTGCCCGCACTGCCCCGAGAAGTTCCACTGCCATTACAACAGACTTCTCCACCTTATAAAGCATCATGGTTACAAGAAACCAGAGTTCAAATGCCAGTCCTGCGACCGCGTGTTCCTCCGCCAGTATCTCTTGAACTCTCACGTCAGGAAGTTTCACATGAAGGAAAAGAACCACGGGTGCACGGTGTGCGCGGCCAAGTTCTTCACGAAGTACGATCTGAAGCAACACCTCGGGACGCACGGCGGTGCGGCGGCGCACGTCTGTGCGCTCTGCGGCAAGAGTTACGCGCGGAAGAGCAAAAAGACGCCCAAAACCATCAAGAAATCGAAGGTCTTAGACGCGAGTGCGAGCGCCGAGCCCGACGGCAAAGAGAAGGAAGCGCACATGAAGACCACCAGCCTCGAACTGCTCCTCAACTCCAACCTGACGCTCTTTGACTGGTGCAAGAACAAGTACCGATGCTTCTTCTGCAAAGAGATGTTCCTCGAGACAGCACTGTTGAAAGAGCACTCCAAAACCCACGGCGACCAAGAGATGCAGTCGAAAATCTACAAATACAACGTCAAATATTACTACAGGGCGGAAATAAGCGATCTACAGTGCAATCACTGTTCAAATCCAGCCGAAAACCTAACAGAACTGACGCAGCACTTATCTAGTACCCACAGCGTCAGTTTCAAGACGCAAGACTCCTTACTTATGCCTTATAAACTGACGGATCTGAGCTGCCAACTCTGCAAGCGCGAGTTCCACTCCTTTGTAGTCCTCGATCACCACATGACGTCGCATTACAGCAAGTATGTTTGCGACACTTGCGGCAAAGGGTTCCGGCAGAAATACTGCCTCAGATCCCATTTGGTGACGCATATAAAGAAGCTcttcaaatgtcaaatgtgtaattTAACTTTCGACAACTACTACCGGAAGAGGAAGCACGATATCTCCGAGCACGACATGTCTGACAAGTTCAACTCTTGCCCGCACTGCCCTGAGAAGTTTATGCATTACTTCGGGCGGCTAAAACACTTGATAAAGGTGCACGGGTACAAGAAACCCGAGTTCAAATGCAACAGTTGCGACAAAGTCTACATGAACAACGCACTACTGAGATCTCATATTCGCAACATACATTTGCAAGAGCGCAACTTCGAGTGTAACATATGTCAGAATAAATATCTGTGGAAGTGTGAGTTGACGGACCATATGAAGTCGCACATTCAGGCTAGGGACTTCGTTTGTACTTACTGCGGGAAAGGCTTCTATAGACGAAGGAACCTCAACGAACATTTAGCGATACATGTGGAGGAGTTTAGGCACGTGTGCGCGGTCTGCGGTAAGTCTTTCGCGCAGAAATATAATATGAAAATGCACATGCGGCGATGCCAGGATAGTAAGAAGAAATAG
- Protein Sequence
- MNSTGDMFLWQPHVCQCCLTQGCYKELSSEYFYMGEKEIYEEMLFSVFNITITPEQREQRICEVCIQKLRDGCSFKRQVLRSQHTLAQKGVADKAKVESGAQESEVKLELELVPDDDGHFDDGELFEDAAPCSDVKLEVSALPAACAGAPAAARRSGAGAGPTRKGREKKSKGTRQEKEVIARTEQSQKLSNKPPRSLEQFHHEKNLKIDTTHLMKNSNLCAFKWHTNKYQCFCCKTTFTDIDDLKTHASHHSWAEVMNRILRNNAVQYHKVEITGLACKLCSEPQETISKLKQHLTLHKINFKEEKDLLIPFVIKKDVFQCAECQKTFVTFPSLNIHMNKHFQNHICETCGAAFIHDSNLREHRHRHENKKYSCEKCNTEFDSLYKRQLHDASVHKTNGSRLCPHCPEKFHCHYNRLLHLIKHHGYKKPEFKCQSCDRVFLRQYLLNSHVRKFHMKEKNHGCTVCAAKFFTKYDLKQHLGTHGGAAAHVCALCGKSYARKSKKTPKTIKKSKVLDASASAEPDGKEKEAHMKTTSLELLLNSNLTLFDWCKNKYRCFFCKEMFLETALLKEHSKTHGDQEMQSKIYKYNVKYYYRAEISDLQCNHCSNPAENLTELTQHLSSTHSVSFKTQDSLLMPYKLTDLSCQLCKREFHSFVVLDHHMTSHYSKYVCDTCGKGFRQKYCLRSHLVTHIKKLFKCQMCNLTFDNYYRKRKHDISEHDMSDKFNSCPHCPEKFMHYFGRLKHLIKVHGYKKPEFKCNSCDKVYMNNALLRSHIRNIHLQERNFECNICQNKYLWKCELTDHMKSHIQARDFVCTYCGKGFYRRRNLNEHLAIHVEEFRHVCAVCGKSFAQKYNMKMHMRRCQDSKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -