Zhep013283.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439386.1:15038102-15042968[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0015 0.084 13.8 0.6 1 23 170 192 170 192 0.94 2 16 0.57 31 5.7 0.5 2 21 220 239 219 242 0.91 3 16 0.29 16 6.6 0.1 2 23 263 285 262 285 0.95 4 16 0.00024 0.013 16.3 2.3 2 23 291 313 290 313 0.95 5 16 0.0036 0.19 12.6 0.2 1 23 318 341 318 341 0.94 6 16 0.007 0.38 11.7 0.2 2 23 344 366 343 366 0.96 7 16 0.76 42 5.3 1.1 2 22 373 393 373 393 0.95 8 16 0.0012 0.068 14.0 0.3 1 23 447 470 447 470 0.95 9 16 0.77 42 5.3 0.2 2 23 498 520 497 520 0.93 10 16 7.6 4.1e+02 2.1 0.1 7 23 550 567 542 567 0.78 11 16 2.9e-05 0.0016 19.2 2.8 3 23 574 594 573 595 0.95 12 16 0.27 15 6.7 0.9 2 23 601 623 600 623 0.94 13 16 0.00029 0.016 16.0 4.3 1 23 628 650 628 651 0.96 14 16 0.0055 0.3 12.0 1.1 2 23 656 678 655 678 0.96 15 16 8.3 4.5e+02 2.0 1.1 2 23 685 706 684 706 0.83 16 16 0.0051 0.28 12.1 2.5 1 23 712 734 712 734 0.97
Sequence Information
- Coding Sequence
- ATGGGTTTCGACGAAGTTTTAGTGAAAGAAAACCCCGGTATTTGCCGATGTTGTTTATCTGAAGGATGTTTCAGAGATCTAGCGCTCTCTTACCAGCACAACGACCAGATGGAAGTCTACGATAACATGCTTATGGATTCACTGAATATTTGTATATCGCAGTTCGCAGAGGGCCCAAATGGCCCCAACCGACTCATCTGCGAGGTGTGCATCACGCGGCTTCGGGACGCTTGCAACTTCAAGAAGCAGGTGCTTGACTCGGAGAAACGCTTCATTGACATGCTGCACCGAGGAGACTTGCCAACAGtTGTGCTCCGAGATGAGATCAAATCCGAATCAGAAGCAGATTTGCAGGAAGACGTGGTAGATAACTGTGACCTGGATATTTCTGATGATAGCGCCAGCACTACGGTTCCCTACGACGAGACGCCGACGCGGCGCCGACAGAAGAACTTAGCAACTCTTTTCAACAACACCAGCGTCATACCGTTCAAGTGGCGCGGGAAGTACCTCTGTTTCTACTGCGGGAAGACCCTGGAAGAGTATTCGGACCTCAGGAAGCACACCCTAGCCCACGGACAATGCGACCGCACACACTACGCCATCAGACTTGTCCGGTCCGGAGACATGGAGGTCAAAATAGACGTCTCAGATATAACGTGCGAAGTGTGCAGCGAGCCCTTCAAAGATTTCGAGGAGGTAGTCATGCACTTAAACTGTAAACACAACTTGGAGTACGACTCTCAAGTAAGCCTCAGCCTCACCCAGTACAGATTGGCGGATTTGACCTGCCTCAAATGCGGCGAGGTGGCGACCAGTTTCAGGAGTCTTGTAGGACACGTGAACAAGAACCACCCAGCTAGTCCGTGCGTCTGCGAACGATGTTCCAAGGCGTTTTCAAAGAGGAAGGATTTAGTTGTCCACATGAACAGCTTTCACAAGAGCGGCGGCTACGACTGCGGCGAGTGTGGAGTCAACTTCGACAGCGCAACAAAGCTGCGGTCCCATAAAGACAGCAACCATCCGCAAGTCTGTGACGTGTGCTTCAAGACATTCCCATCCGTGGAGCTGAGGAGAGTCCACATGAACCGCGCGCACGTCACAGACGGCGCGGCGCAATGCGAGTTCTGCGACACGACGTGGAACACCAAGCACGCGTACTTGCAACACTTGCGGAAGTGCAAACTAAGGAAGCAAGTCTCCGTCAATGttagaaaagacaagtcaaagtTAAAGGAGGAAGAAGGTAAGTGTAAAGAGGTCAAACTAGTGAGGCAGAACATAGCGTGCATTCTCAACATGTCCAATGCCGTGCCCTTCAAGTTCTTCATGAGTACCTTCCGCTGTTTCTTTTGCCCGACGAACTTCACAGAGCCCGAGGAGCTCAGAGCTCACACAACCATTGAGCATCCCGTGTGCGACGTCAAACATCGCGCCATGAGAATGAGAGCGCGACAAGACAACGACATCAAAATCGACATAGCGAACCTAACGTGCAAACTGTGCTTGGAAGGCGTGTGCGATTTGAGCGCGCTGATTGACCATCTGGTTTCTAAGCACCAAGCGAAATACGACAAGACTGTCTACGTCAAAATCATTCCTTTCAAGTTGCTAAGGGGCAGATACCCCTGCCTTTTGTGCGCGGACGGGCAAGAGTTTAAGTTCTTCGTCAACTTATTGAAGCACGTGAACGAAGCGCATTCGAACAACGAGGTGCTTTGCATGTTCTGCGGCGAGGCTTTCCGCTCGAAGAACAACTTGAGGTCCCACATCCGGAAACACCACGCCCCGCCGAGACTCCAGTGCGCGGAGTGCGAGCTTGTCTTCCACACAGGACACAAACTCTCCACCCACGTCGCGCGGGCGCACGGCAGGAAGCTCTTCAAGTGTAATAACTGTCAAGAGAAATTCTCGACGCCCTACTTGAAACGTCGCCACATGATCAACCACCACAACGTCGGCTCAAAGTGTCCTCATTGCGAGAAAATGTTCACAGGCAACTCCATAATGCTGGCACACGTCAGACGGACGCACTTGAAAGAGAAGACCGTAGAGTGTCCGGTTTGTCACGTCAAAATGTTTGATGTACACATGATGAAGATGCACATAGTGAGACACGAAGGGGAGCGAAATTTCCACTGCGACGTTTGTGGCAAGAAGTTCCTGTGGAAGAAGAATCTGAGGAACCACATGAGTGTACACGAGAACAGTAAAGGCGGACACAGCGGCGGCGATGTGCTGAGTTGA
- Protein Sequence
- MGFDEVLVKENPGICRCCLSEGCFRDLALSYQHNDQMEVYDNMLMDSLNICISQFAEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKRFIDMLHRGDLPTVVLRDEIKSESEADLQEDVVDNCDLDISDDSASTTVPYDETPTRRRQKNLATLFNNTSVIPFKWRGKYLCFYCGKTLEEYSDLRKHTLAHGQCDRTHYAIRLVRSGDMEVKIDVSDITCEVCSEPFKDFEEVVMHLNCKHNLEYDSQVSLSLTQYRLADLTCLKCGEVATSFRSLVGHVNKNHPASPCVCERCSKAFSKRKDLVVHMNSFHKSGGYDCGECGVNFDSATKLRSHKDSNHPQVCDVCFKTFPSVELRRVHMNRAHVTDGAAQCEFCDTTWNTKHAYLQHLRKCKLRKQVSVNVRKDKSKLKEEEGKCKEVKLVRQNIACILNMSNAVPFKFFMSTFRCFFCPTNFTEPEELRAHTTIEHPVCDVKHRAMRMRARQDNDIKIDIANLTCKLCLEGVCDLSALIDHLVSKHQAKYDKTVYVKIIPFKLLRGRYPCLLCADGQEFKFFVNLLKHVNEAHSNNEVLCMFCGEAFRSKNNLRSHIRKHHAPPRLQCAECELVFHTGHKLSTHVARAHGRKLFKCNNCQEKFSTPYLKRRHMINHHNVGSKCPHCEKMFTGNSIMLAHVRRTHLKEKTVECPVCHVKMFDVHMMKMHIVRHEGERNFHCDVCGKKFLWKKNLRNHMSVHENSKGGHSGGDVLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -