Zhep004255.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- ZEB2
- Assembly
- GCA_949319315.1
- Location
- OX439379.1:33131811-33145419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00011 0.0062 17.3 0.6 1 23 262 284 262 284 0.98 2 12 0.24 13 6.9 0.9 1 21 324 344 324 345 0.94 3 12 1.1e-05 0.00062 20.5 3.5 1 23 349 371 349 371 0.99 4 12 0.008 0.44 11.5 0.8 1 20 380 399 380 401 0.94 5 12 0.14 7.5 7.6 2.7 1 23 413 436 413 436 0.93 6 12 0.00095 0.052 14.4 3.0 1 23 442 465 442 465 0.95 7 12 8.4e-07 4.6e-05 24.0 3.8 3 23 478 498 477 498 0.98 8 12 0.0021 0.12 13.3 0.2 1 23 504 527 504 527 0.96 9 12 0.0029 0.16 12.9 2.8 1 23 542 565 542 565 0.92 10 12 2.1 1.1e+02 3.9 0.1 1 9 571 579 571 584 0.89 11 12 3.4e-05 0.0018 19.0 4.6 1 23 633 655 633 655 0.98 12 12 0.048 2.6 9.1 0.4 2 23 663 685 662 685 0.93
Sequence Information
- Coding Sequence
- ATGGAAGGGTTACTCCGCGCGTGCTGGCACTGCCAGGCGCGCGTTAACAGCTTCGCAAACTTCACCGTCAACGCCCAGAAGAGTATCCGCATACTTCGGGACTATTTGGCTGCCCCCACTGATTGTTGTCTGAGCGTGACAGAAGTGGAGCTGGTGGATGTAGCACCAATCACCAAGGTTCCTGGGCCACAGAGCAGCAAGGGTCAACTGCCGCTGACCACAGACAAATCTGATGAAGATTTGAAGGAGGAGTTTGATGACTTTCAAGTTGTTTCGCTATCAAAAGACGAGACGGCGTCGATCGGCAGCATAAAGCTAGAGGACCACCTGCCTGAGGATGATTACTTTGACGTGGAGTGCTCGGGGGAGCCCCTGGGCCAGCTGCGCAAAGACGGGGGGGAGGCGCTGGACCAGCTGCGCAAGGAGGGGGAGGTCACACAGGAACAAACAGTGGATTCGGCTAAACAAAAGAAGAGCCTCAAGAAAGAAGTAGCGGCGACAAAGAAGAGAAAGGTCAAAAAAGAGAGTGTGAAGTCTAAGAGCCCGGCGAAGTCGCCGCGCTGGACGGTGCAGTGGGCGTCCAACGAGCGGGCGCTCGAGTGGTACGTGGCGGAGCGCGCGGCcgaggtggcggcggcggcggcggcgggggcgcaAGCGGCGGCGGGGGCGCCCGGGGCGGCGGACCGGCTCGTCTGCGTACAGTGTCGGCGCGCCACCTTCGCCGACGGGGACGAGCTCGCGCAGCATGTCGCCACCAAGCACGACGAGAGCGCCGGCGAGTTCCAGTGCAACCTGTGCAAGTACCGGTTCGCGGGGCAGCCGTCGCTGCAGCAGCACATCGAGCGGCACTACCTGGTGTACCGCTGCCGGCTGTGTCCCTTCGAGGGGCGCGGGCTCAAGCCCACGCAGGCGCACTGGGCGCAGGCGCACAAGCAGCCGCCCGAGAAGCCCGCCAAGCAGACCGAGTACCAGTGCAAGCGTTGCAAGGATAGCTTCTCAGCGTTCCCGGCGCTGCGCAAGCACCGACTCAAGTGTTCGACGTACAAGTGCGAGCAGTGCGACAAGACGTTCAAGTACCACTCGTCGCTGTACGAGCACGCCAGGATACACAAGGAGGGCGCGCAGGATCAGATGTATTACTGCCAGGTATGCGACACACAGTTCAAGAGCGCGCGCTGGTACAAGCAACACTTCAGCATCAGCCTCAAGCACGTCTCGAGGGACGCCTTCAAACACGAGTGCCCGCACTGCCAGATGCGGTTCCACATCCCGCGGCGCCTGCGCGAGCACATCGGCTCGGTGCACCTCAAGCACGGCATCTACGCGTGCTCGCTGTGCCCCAAGACCTACATGACCAAGCTGCACTTAAAGAAGCACCGCGCGAAGACGCACAACATCGGCGCGGTGGTGGTGGCGCGCGACAAGATCTGCGACCACTGCGGGAAGGCTTTCACGTCGAACCACCTCCTCAACAACCACATGCGCTCGCACACCGGCGAGAAACCGTTCAAGTGTCAGCTGTGCCCCGCCGCCTTCGCGCAGAACGGGACCCTGTATACGCACAACAAGAGCGTGCACCGCAAGAAGCTCAGCAAGGACGGACACACCGACTCGCCCGCGTATCAGTGCGAGGAGTGCGGCAAGGAGTTCCCGACCAACTGCAAGCGGCAGGCGCACTATGACTACTTCCACCTCAAACAGAGCAAGTTCACCTGCGAGATCTGCAACAAGGTTGGTGCTTCATTCGGCTTGGTCGCTTCAGTTCTAGACCTGCAAGCGGCAGCTATGtggatgtATCTTCATGTCGTCGACGTCGCTCAAGAACCACAACGCGACGCGACGTCGCTCAAGAACCACAACGCGACGCGCCACGGGATGCTCTCCAGCAAGAGCTTCAACTGCGACACCTGCGGGAAGAGATTCAATACGTCGTCGGCTCGCTGCAACCACATGAAGACACACCTGGCGGAGGGCAGCGGGCTCAAGTGTCGCTCGTGCGACGCCGAGTTCAAGAACCCTGGCGCGCTCTACATGCACTTCAAACTCAAGCACCTCAAGCTCAAGCGCAGCGACAAAGTGAGCATCAAGAACCTCTGCAAGTCGGATAAGGAGCTGATCATCAACAGAGAGCCGCAGTGA
- Protein Sequence
- MEGLLRACWHCQARVNSFANFTVNAQKSIRILRDYLAAPTDCCLSVTEVELVDVAPITKVPGPQSSKGQLPLTTDKSDEDLKEEFDDFQVVSLSKDETASIGSIKLEDHLPEDDYFDVECSGEPLGQLRKDGGEALDQLRKEGEVTQEQTVDSAKQKKSLKKEVAATKKRKVKKESVKSKSPAKSPRWTVQWASNERALEWYVAERAAEVAAAAAAGAQAAAGAPGAADRLVCVQCRRATFADGDELAQHVATKHDESAGEFQCNLCKYRFAGQPSLQQHIERHYLVYRCRLCPFEGRGLKPTQAHWAQAHKQPPEKPAKQTEYQCKRCKDSFSAFPALRKHRLKCSTYKCEQCDKTFKYHSSLYEHARIHKEGAQDQMYYCQVCDTQFKSARWYKQHFSISLKHVSRDAFKHECPHCQMRFHIPRRLREHIGSVHLKHGIYACSLCPKTYMTKLHLKKHRAKTHNIGAVVVARDKICDHCGKAFTSNHLLNNHMRSHTGEKPFKCQLCPAAFAQNGTLYTHNKSVHRKKLSKDGHTDSPAYQCEECGKEFPTNCKRQAHYDYFHLKQSKFTCEICNKVGASFGLVASVLDLQAAAMWMYLHVVDVAQEPQRDATSLKNHNATRHGMLSSKSFNCDTCGKRFNTSSARCNHMKTHLAEGSGLKCRSCDAEFKNPGALYMHFKLKHLKLKRSDKVSIKNLCKSDKELIINREPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -