Zhep006407.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439381.1:19044756-19048710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.021 1.2 10.2 1.6 1 23 300 323 300 323 0.95 2 11 9.8e-06 0.00053 20.7 0.4 1 23 344 366 344 366 0.98 3 11 6.9e-05 0.0038 18.0 1.4 2 23 372 393 371 393 0.97 4 11 0.0012 0.063 14.2 3.2 1 23 397 420 397 420 0.97 5 11 0.53 29 5.8 0.2 2 23 424 444 423 444 0.92 6 11 8.7e-05 0.0048 17.7 0.2 2 23 530 551 529 551 0.96 7 11 2.2 1.2e+02 3.8 0.3 2 23 571 593 570 593 0.86 8 11 1.3e-06 6.9e-05 23.5 4.1 1 23 599 621 599 621 0.98 9 11 0.0025 0.14 13.1 1.7 2 23 627 648 626 648 0.96 10 11 4.1e-05 0.0022 18.7 2.5 2 23 655 677 654 677 0.97 11 11 0.12 6.8 7.8 5.7 3 23 717 738 716 738 0.89
Sequence Information
- Coding Sequence
- ATGGAGCAGGAGAACATAACGATGGAGGCAGAAGTCATTTACCCTGTCCTGTGGTTGCCAAAGAAGTGTACAGCACTTGAAACAGAATGTGAAGCGAATGAAAACGTCTTTATAGACCTGAACATCAGCTCCATTGACACTGAAGGCAACACCATGAGCATCTACTCCGGTTACTGCAATGTGAAGCTGGTAGACAGCTATGACTGCAATAACAAGATGGAAACTATAGAAACAATAGACTTCGATCAGGTCCCAATCATTATAGATGAAACCCCAGTGGATACCTCCTTCAACCAGTCACAGGTCTGGATAGACCCCGTCAGAAGTCCAAATGTTTATAACCACTATGAGACTATGGAAGCCCTGGAGAACTATTCCATGGATAATCAGACCAGAACTAGCCGGGTGACAGTGGAGAAACGCAGTACATACATAACCCAAAACATCTACAACTATGAAGAGTCTATCCGCTACTCGCCTGAAGAATACGAGCACAAGAAGTTCAAAAAGATACACTTCAACGAACAACAAAATGGCCCGAATACGTCAATAGATCAGAACAACTACAATTTGTATGAAGATGACGAGTTTCAATGTGGAGTCTTTCTGTCACAACTCTCGGATGAAATAATAAATGAAAAGGAAAACAGAGTGAGGACGGAACGCAGATTCTCCGAGATGCAAAGTCAGAATGATGCGCTCAAGCAACTGATGTCACCAGATATTCAATCGTTTTCGAAGCAGACTAAGACAATATTGTTCTTCGGTCATGACAAGAGTCACGGTGAGACCATACAGAAGATTGTGGCAAATGATCCGATGGTGGAATGCAGTACCAGTCAGTATCATGACGAACCGGAGTATGACCCGGCGCCCGCGGACCCGAACCAAAAGAAGTACCAATGCGAAAAGTGCATGCGGATCTTCAACCAGCTGTGCACCTACAAGGCACACATGATCGGGGGCCACAGGCGGAGCCCTAGGGCTTACAGCCCGTCCCCCTACCGCCCCTCGGGCAGCCGCACGCAGTACACCTGCCCAGAATGCGGAAAAACCCTGAAAAGCCAAGACAAGTTCGAAGCTCACACCGCGAGACATGGCGACCCAGAGCTAGAATGCAGAAAATGTCTCAAGGTCTTCGCCTCAAAATTCACCCTCAGAGCCCACTACCGAACCCACACGCGGAAGTACCCTTGCACGACATGCTTCAAGTCTTTCGCTGCCAAGAAGGAGCTGACCCTACACATGACGAAATGCCACTCTATCCTGCGATGCAATAAGTGTGACTACTTCATAAACTACGAGGATCTAGATGCGCATATGTTAGGTCACGAGGAGAAGCAAGAAGCCGTAGACACCAGTGAGACGGAATTCGCGGGTTCTTTCATCGATGAAGAGCTCACCAATGAGGACTTCATGATTCCGACCGACACTATTCAAGTGGAGGACAAGTTTGAAGAGCAGGAGAGTGAAGAAaagggtgatgatgatgatgccagGAACGCAGACTTAGTGATAGCCAAAGTGATGTCGAATAATATatttcagtcgcgatgcaagaGGTCGAAACGACATAGGACTGAAAAGACCTGCGAAGTGTGTCAAAAAGTGTTCGACCGCATCGGCGACCTCAAGCGTCATCTCATCGAGCATGTTGTCAAGAGTACCCTCGCCAAGACTCCCGTCAGCAGCGACGGTACACTCACCATCCAGTGCGAGGTCTGCCAGCTCGATACCTTCACGAAGATCGACAAGTACAAGGCACATCTGCGCGAACACGCCAAGCTCACCCTCTACAAATGCACATTCTGCGACAAGTCCTTCTCAGACTCCAGCAACTTTTCCAAACACAAGAAGATCCACGGCGTCTCCTACCTGCAATGCGACCTTTGCCAACGCAAGTTTAACTCCAAAAAAATGATCACCCAACACATGGATTACCACATACGGAATCCCCCGATCACCTGTGACTATTGCAACAGGATCTTCCACTTCAAATCCATGCTGAATAAACACATCAAAACGGCGCACACGAGAGAGGTAGCTTACAGGTTCCACTGTAGATTCTGCCGCGAGTGCTTCAAGTCTTTGAAGGAGAAGTGGGACCACGAGTGGTCGGTACACAAGGTGCGGAAGGTCGTGGTGGATTGTCTCATGTGCGGCTGCAAGTTCCGGAAGTATTCCGAGCTGAAGCGACATTGCAGCACTGAGCATGACATGCAAATTCCTCCGGCCAGCAAACTGCTGAAAGCTGAAAAGAAATCGGTTGGATGA
- Protein Sequence
- MEQENITMEAEVIYPVLWLPKKCTALETECEANENVFIDLNISSIDTEGNTMSIYSGYCNVKLVDSYDCNNKMETIETIDFDQVPIIIDETPVDTSFNQSQVWIDPVRSPNVYNHYETMEALENYSMDNQTRTSRVTVEKRSTYITQNIYNYEESIRYSPEEYEHKKFKKIHFNEQQNGPNTSIDQNNYNLYEDDEFQCGVFLSQLSDEIINEKENRVRTERRFSEMQSQNDALKQLMSPDIQSFSKQTKTILFFGHDKSHGETIQKIVANDPMVECSTSQYHDEPEYDPAPADPNQKKYQCEKCMRIFNQLCTYKAHMIGGHRRSPRAYSPSPYRPSGSRTQYTCPECGKTLKSQDKFEAHTARHGDPELECRKCLKVFASKFTLRAHYRTHTRKYPCTTCFKSFAAKKELTLHMTKCHSILRCNKCDYFINYEDLDAHMLGHEEKQEAVDTSETEFAGSFIDEELTNEDFMIPTDTIQVEDKFEEQESEEKGDDDDARNADLVIAKVMSNNIFQSRCKRSKRHRTEKTCEVCQKVFDRIGDLKRHLIEHVVKSTLAKTPVSSDGTLTIQCEVCQLDTFTKIDKYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGVSYLQCDLCQRKFNSKKMITQHMDYHIRNPPITCDYCNRIFHFKSMLNKHIKTAHTREVAYRFHCRFCRECFKSLKEKWDHEWSVHKVRKVVVDCLMCGCKFRKYSELKRHCSTEHDMQIPPASKLLKAEKKSVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -