Zhep004180.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439379.1:32097514-32107954[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.15 8.3 7.5 2.9 1 19 185 203 185 208 0.94 2 10 0.024 1.3 10.0 0.1 1 23 214 236 214 236 0.97 3 10 0.3 16 6.6 0.2 1 23 240 263 240 263 0.93 4 10 5.5e-06 0.0003 21.4 1.3 1 23 270 292 270 293 0.96 5 10 3.8e-05 0.0021 18.8 1.3 2 23 300 321 300 321 0.98 6 10 0.0001 0.0056 17.5 0.6 1 23 327 349 327 349 0.97 7 10 0.12 6.8 7.8 0.2 1 21 355 375 355 376 0.88 8 10 0.00018 0.0096 16.7 3.8 2 23 394 415 394 415 0.96 9 10 8.7e-05 0.0047 17.7 0.6 1 23 431 453 431 453 0.99 10 10 0.00049 0.027 15.3 0.6 1 23 459 482 459 482 0.94
Sequence Information
- Coding Sequence
- ATGAATTTAGAATTTTGTCGCGTATGTCTACGAAAACAAGAAGGCCTCGTACACTTCGGGAATGACAATGAAATCGTTCGAGCCTTCTTCGATTTAGCTAATATTACCAAAAATCTAGAACAATTACTCGAAAGACACAGGATTCATTCAGGCAAAAATTACAATGACAAATCGGCACGAAATCTACTGGACACCTTCAAAAGCGCCAAAAGCATTCGTGCAGAGACAACCAACTCCGACATCAAGATAAAAGATGAATTTACAAACTTTCCTCTGGCAGAAGTGTTCGAAACTTCATTTGCCGATGAAAGCCTTGAAGATGATGATTGTCCTTTAAAGGCAAAGAATGGAAGGAATAGGGGTGCCAAGAAAAAGTTGAAGAAAAGTAAAACCCGCGGGGTAAGCTCTCACAAAGGCCCGAAAGCTCAGAAATCCCCCAGAACAATAGTCGAGGTGGACCCAGCCAAGATAACCGTCATAGAACGGACGAAGGAGGAGCAAATCAGGGATCAGCAGATGGAAGGGCTCAAACCCTCCTACCAGAACATGGTCTTCAAGTGCGAGAAGTGCTTAAAAGGGTTCAACTTTGAGAGGAAGCTGAAGTCTCACGACGAGAAGTATCACAAGCCAGCAAGCGCGTTCGCGTGCGACGTCTGTACGCGCACGATGTCCGGCGCCGCGTCGCTGGCGATCCATCTCAAGAAGCACCAGCTCGTCTACCAGTGCAACCTCTGCTACCTCAGGTTCGCGGAGAAACCACGCGCCATAGCGCACTACCAGAGCGTTCACGAGGGGACCGGACAAGAGTACCCGTGCACACAATGCGACAGAGTGTTTGGGAACAGGAGTTCCCTAAACGGCCACCTAAGGAACCACCACCCGGCGAGCGCGCGGCCCCAATGCCACGTTTGCCAGAAGACGTTGGCCACCAAAGACAGCTTGCTGAACCACAtgctTATCCACACCGACGAAAAGAACTACGCATGCCAAGTCTGCGATAAGCGGTTCCGACTGAGGCAGTCGGTTGCCAAGCACATGCTGTCACATAGCTCGACGCGCGCGCACTACTGTGCGCCCTGTGACGTGAGTTTCAAGTCGCGCGCCGCCCTCGCCGCGCACGCCAAGCACGCCGCCGCGCACGCGAGCCCGCGCGCCGTCGCACAGGCTATGGCTCAAAACACGTGCGACAAGTGCGGTCGCGGCTTCACGACGCGGCACAGACTGAAGAGTCACATGACACTACACAGCGGCGGCAGAGTCGCCCGGCGCAGACAGCCCAGCGGGACCCGATACGTGTGCCACCAGTGCGGCCGGGGCTTCGCGGCCCGCCGTACGCTCGACAACCACATCCTGACGCACTCGGGGGCGCGACCGCACGCCTGCACGCGCTGCGACGCGCGTTTCACTCAGCTCGCCACGCTGCGAGCGCATCTGGCACGACTGCACGCCGACAAGCCGGCCCCTGCCACCTGA
- Protein Sequence
- MNLEFCRVCLRKQEGLVHFGNDNEIVRAFFDLANITKNLEQLLERHRIHSGKNYNDKSARNLLDTFKSAKSIRAETTNSDIKIKDEFTNFPLAEVFETSFADESLEDDDCPLKAKNGRNRGAKKKLKKSKTRGVSSHKGPKAQKSPRTIVEVDPAKITVIERTKEEQIRDQQMEGLKPSYQNMVFKCEKCLKGFNFERKLKSHDEKYHKPASAFACDVCTRTMSGAASLAIHLKKHQLVYQCNLCYLRFAEKPRAIAHYQSVHEGTGQEYPCTQCDRVFGNRSSLNGHLRNHHPASARPQCHVCQKTLATKDSLLNHMLIHTDEKNYACQVCDKRFRLRQSVAKHMLSHSSTRAHYCAPCDVSFKSRAALAAHAKHAAAHASPRAVAQAMAQNTCDKCGRGFTTRHRLKSHMTLHSGGRVARRRQPSGTRYVCHQCGRGFAARRTLDNHILTHSGARPHACTRCDARFTQLATLRAHLARLHADKPAPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -