Basic Information

Insect: Zelleria hepariella
Gene Symbol: -
Assembly: GCA_949319315.1
Location: OX439386.1:14631545-14636736[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0056 0.31 12.0 0.6 3 23 44 65 43 66 0.96

2 18 1.6 85 4.3 0.8 2 23 87 109 86 109 0.95

3 18 0.01 0.55 11.2 0.1 1 23 130 152 130 152 0.97

4 18 2.2e-05 0.0012 19.6 0.9 1 23 156 179 156 179 0.93

5 18 0.037 2 9.4 0.3 1 20 184 203 184 205 0.94

6 18 0.0011 0.062 14.2 3.5 1 23 212 235 212 235 0.94

7 18 0.16 8.7 7.4 2.4 2 23 271 292 270 292 0.84

8 18 0.14 7.9 7.6 0.2 1 13 298 310 298 312 0.90

9 18 0.0021 0.11 13.3 2.0 3 23 345 366 344 367 0.96

10 18 3.8 2.1e+02 3.1 0.8 2 23 388 410 387 410 0.93

11 18 0.22 12 7.0 0.1 1 20 431 450 431 453 0.88

12 18 5.1e-05 0.0028 18.4 1.2 2 23 458 480 457 480 0.93

13 18 0.007 0.38 11.7 0.5 1 20 485 504 485 506 0.93

14 18 0.094 5.1 8.1 3.2 1 23 512 535 512 535 0.93

15 18 4.5 2.5e+02 2.9 0.3 6 19 546 559 545 564 0.89

16 18 0.0016 0.086 13.7 2.4 2 23 570 591 569 591 0.95

17 18 0.00089 0.049 14.5 1.7 1 20 597 616 597 619 0.94

18 18 0.00016 0.0089 16.8 4.9 1 21 625 645 625 648 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0056	0.31	12.0	0.6	3	23	44	65	43	66	0.96
2	18	1.6	85	4.3	0.8	2	23	87	109	86	109	0.95
3	18	0.01	0.55	11.2	0.1	1	23	130	152	130	152	0.97
4	18	2.2e-05	0.0012	19.6	0.9	1	23	156	179	156	179	0.93
5	18	0.037	2	9.4	0.3	1	20	184	203	184	205	0.94
6	18	0.0011	0.062	14.2	3.5	1	23	212	235	212	235	0.94
7	18	0.16	8.7	7.4	2.4	2	23	271	292	270	292	0.84
8	18	0.14	7.9	7.6	0.2	1	13	298	310	298	312	0.90
9	18	0.0021	0.11	13.3	2.0	3	23	345	366	344	367	0.96
10	18	3.8	2.1e+02	3.1	0.8	2	23	388	410	387	410	0.93
11	18	0.22	12	7.0	0.1	1	20	431	450	431	453	0.88
12	18	5.1e-05	0.0028	18.4	1.2	2	23	458	480	457	480	0.93
13	18	0.007	0.38	11.7	0.5	1	20	485	504	485	506	0.93
14	18	0.094	5.1	8.1	3.2	1	23	512	535	512	535	0.93
15	18	4.5	2.5e+02	2.9	0.3	6	19	546	559	545	564	0.89
16	18	0.0016	0.086	13.7	2.4	2	23	570	591	569	591	0.95
17	18	0.00089	0.049	14.5	1.7	1	20	597	616	597	619	0.94
18	18	0.00016	0.0089	16.8	4.9	1	21	625	645	625	648	0.94

Sequence Information

Coding Sequence: atgcacttcgatcacaggccagttcctttgcagcctgGACCACGCACTGCTCCAAAGATTGCTGAGCGGGCCATTATCCTAAACACGACAGCGTACCCTTTCCGGCCGGCCGGCGCGAATGAGATGTTGTGTCCGTACTGCCTCCAGGAGTTCCCTGACGCGAATCTCTACCGACAACATATGAAACAAGACCACCACGATGTACCCGATACCTTGCACGATAATGTCGATCATGTCAAAGTAGATATAACCGAGCTGGAGTGCCGCCTCTGCCACGACAGATTCAATTACCTTAGTATGATAGCAGAACATTTACGGCAAgatcacaaaataaatattgaaccgAGCAGTCTACAACTCAAACCGTATAGGTTACATGACAAGAGCTATGCTTGCGGCGTCTGTGAGAAGGAATTCATTAGCATAAAAGAAGTGAGCAAGCATTTATCGTCACACTTCTTTAAGTACACTTGTTCCATTTGTGGAAAAGGTTTCATAAACAAAGGTACCTTGTGCATACACACGGCGCAGTCGCATCGGGAGAAGAAGTACTCTTGCCTTAAGTGCCTGAAGAGTTTCGATACTCGAGAAGAAAAGACGGCGCATTTGGCCAACACGCGTAGTTGCTGGCTGTACCGTTGCAAAATGTGCCCAGAGAGATTTAGGACCTCCTCTATGCGGACCCACCATTTGGTCAAATCGCACAATAAACCAGAGAAAACTTTTACCTGTGCTTGTGGTGATAAGTTTAAGGGCGCTGGACCTTACAGAATACACCGCATCAAGGTTCACGATTTATTAAGAGATCTCTCTTGCACATACTGCGGCAAGAAATGCATCTCCAAGTTTGATTTAGACTTTCACTTAGTGTCACACACAAAGGAAAGGAAGTTCCAGTGTGCTGTTTGCGATAAAATGTTTGGGACAAAGAACGCCGGAAGACCATGCGCTGCTCGAAAGATTGCTCAGCGGGCAATAGTCCTATACACGACAGCGTATCCTTTCCGGCCGGCCGGCGCGAATGAGATGTTGTGTCCGTACTGCCTCAAGGAGTTCCCAGACGCGAATCTCTACCGACACCACATGAAACAAGATCACCACGATGTACCCGATAGCACGCCCCTTCATGTCGATTACGGCAAAGTAGATATAACCGAGCTAAAATGCCGCCTCTGCCACGACAGATTCGAATACCTTAGTACGATAGCAGAACATTTACAGCAAGCTCACAAAATAAATATCGAACCGAGCAGTCTTCAACTCCAACCGTACAGGTTACAAGATATGAGCTATGCTTGCGGCGTCTGTGACAAGGAATTCATAGGCATTACCCAGGTGAGCAAGCATTTACCGTCACACTTCTTGAAGTGCTTTTGCACCATTTGTGGAAAGGGTTTCGTAAGCGTTGAAACCTTGAAACGACACATGGCGCAGTCGCATTCGGAAAAGAAGTATGCTTGCCTTAAGTGCCACAAGAGTTTCGATACCCGAGAAGAAAGGCAGGCGCATGTGGACAATACGCGTTGCTGGCCGTACTGTTGCACAATGTGCCCAGAGAGATTTAAGACCTACACGATGCGCACCGAGCATTTGGTCAAAATGCACAATAAACCACAGAAAACTTTTTCCTGTGCTTGTGGCAATATGTTTAAAAGTTCTAAAGCTTACAGAGTACACTGCATTAGTGTTCATGATTTTGTAGATCTCTCTTGCTCATACTGCGGCAAGAAATGCATCAACAAGTTTGAATTAGACAAGCACGTAGTCAAACACACAAAGGAAAAGAAGTTCCACTGTACGGTTTGCAATAAGTTGTTTGCGCGAAAGTTCAATTTGTCAGAGCACATGTGGATTCATAACGAGGTCAAGAGGTTCGTGTGCAAAGTTTGTGACAAGACTTTCAATCAAAAACTTGGATTAACTAAGCATATTAGGTGCCACCATTCAGAGACCAAGGTTCAGAATATACGGCGGAAAAAATCCGAATGA
Protein Sequence: MHFDHRPVPLQPGPRTAPKIAERAIILNTTAYPFRPAGANEMLCPYCLQEFPDANLYRQHMKQDHHDVPDTLHDNVDHVKVDITELECRLCHDRFNYLSMIAEHLRQDHKINIEPSSLQLKPYRLHDKSYACGVCEKEFISIKEVSKHLSSHFFKYTCSICGKGFINKGTLCIHTAQSHREKKYSCLKCLKSFDTREEKTAHLANTRSCWLYRCKMCPERFRTSSMRTHHLVKSHNKPEKTFTCACGDKFKGAGPYRIHRIKVHDLLRDLSCTYCGKKCISKFDLDFHLVSHTKERKFQCAVCDKMFGTKNAGRPCAARKIAQRAIVLYTTAYPFRPAGANEMLCPYCLKEFPDANLYRHHMKQDHHDVPDSTPLHVDYGKVDITELKCRLCHDRFEYLSTIAEHLQQAHKINIEPSSLQLQPYRLQDMSYACGVCDKEFIGITQVSKHLPSHFLKCFCTICGKGFVSVETLKRHMAQSHSEKKYACLKCHKSFDTREERQAHVDNTRCWPYCCTMCPERFKTYTMRTEHLVKMHNKPQKTFSCACGNMFKSSKAYRVHCISVHDFVDLSCSYCGKKCINKFELDKHVVKHTKEKKFHCTVCNKLFARKFNLSEHMWIHNEVKRFVCKVCDKTFNQKLGLTKHIRCHHSETKVQNIRRKKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -