Zhep004022.2
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439379.1:29605205-29614039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0023 0.13 13.2 1.1 1 23 233 255 233 255 0.98 2 12 0.022 1.2 10.1 0.1 1 19 262 280 262 285 0.95 3 12 0.0013 0.072 14.0 4.7 1 23 316 339 316 339 0.98 4 12 6 3.3e+02 2.5 0.6 1 23 343 366 343 366 0.89 5 12 0.0041 0.22 12.4 0.1 3 23 415 435 414 435 0.97 6 12 2.6e-05 0.0014 19.3 0.6 2 23 449 471 448 471 0.96 7 12 1.5e-05 0.00083 20.1 2.0 2 23 481 502 480 502 0.97 8 12 0.00098 0.054 14.4 0.2 1 23 508 532 508 532 0.96 9 12 7.3e-06 0.0004 21.1 0.3 1 22 538 559 538 559 0.96 10 12 5.7 3.1e+02 2.5 0.2 12 23 585 596 581 596 0.88 11 12 2.2e-07 1.2e-05 25.8 1.0 1 23 602 624 602 624 0.99 12 12 7.9e-06 0.00043 21.0 0.7 3 23 632 653 630 653 0.97
Sequence Information
- Coding Sequence
- ATGCCAACTCTCCTCTCGCTTGCCTTATGCAACAGGCCTTATGCAATAGGCCTTATGCAAGCTTGCCTTATGCCTCTCACAGCAGAGTCTGTGTCGATGATAGACCGTCACATTTACAACCTCACATCCAATCTCATTTGCGCTCATATAGAAACAATCAACTCTGAACCCACTTACTCTTGTGATGTTAAAGCAGAAAGTGACCCCAACAAAGATATGAAAGACCATAAAAAGAATTTGCTAACGGGTATCatgacatttgatgaaaaagaTTTGCCTTGGTCACAAGCAAGTATAGGTGACATGACAGCTggccaaaaacacaaaaaactcgAAATAAAACCAGACCCTACCCCTCATCAGGTTATACAAAGAAACAAAACAGTTTTGGTTAAAAATCTCAAAATGGAGTTGCAAAATGACAGCGGTGGTTTTGAAACAATCCGAGAAGAAGTGGACACTGAGTTTGAAGGGGTAAGTCGTTCAGATTCTGAGGACGACTTGCCACTGACTTGCATTAGTAGGAGTCAAGAGAAAGCTGAAAAACAAACGAAGAGTAGGACCGTGAAAAAGAGTGGAAATAGAGTTTCCAGCCAGAAAACGTCGTTTTACGCCAAAGAAGTGACTCTCACCCGAGAAGATCAACTAGCAGAAATGAAAGAGCGTGCCACGTCCACAAACTACTTGCATTCGCAGTTCAAGTGCGAAATGTGTTTCAAGGGATTTATCGAGGAAACGGCGTTTAGGAAGCACTTGGATAAGCACAATGAGAGCCGCGGCGCATACCGATGCGACGTATGCGCACTGCGTTACGCGACGTCGCGTCAGCTGCGCGCGCACGATATCTCCGCGCATGCGCGCCAGTACCACTGCCTCACCTGCGCGCATCGCTCGCACACCGCGCACCAAGCGCGCGAGCACGAGCGCTGGCACCGCGGCTTCCTCTACGAGTGCAAACTATGCGGCAAGAAGTTCCGCAAGCCCACGTCCCATCTCACGCACATGCGCAAGAAACACGCCACCGGGCACGACTGTCTGCGCTGCGGCGACAGCTTCGTCGGCCGCCGCGGCCTCGTCGTGCACAACACCAAGACTCACAGGGATGAGGAGCCAGTGGACGACTCTCCGGAATCAGAGCGCACGTGCGATCAATGCAACATCGTGTTCCTAACTGTCGACGCCTGCAAGCGGCACGCTGTCAACTCGGTCAAGCACAAGGATGACACTGAAAACAGCAACGCGTGTAACAGATGCTCCGAACGCTTCGAGTCAGCGGTCGAACTGGCCACTCATATGAGCCTGCACAGAGCAGCGCGGGCGAGAGCGCCGTGCGGCGTTCGACTCACGTGCAGCTATTGCAGCAACGAGTTCGCGAACAAGTCCAAGCTGCAGGCGCACATCCGCCGGGTCCACCTCGGACTGAAGTTCAACAAGAACATCGTGTGCGAACTGTGCGGCAAGAGGTGCACGTCGAACGCGACGTTACGCTACCACCAGCGTACGCACACGGGCGAGCGTCCGTACCCGTGCCGCTTCGCCGGCTGCGCGCGCCGCTTCGCCGACAGCAATCAGCTGAGGATCCATGCGCGGACGCACAGCGGCGAGCGGCCCTACCGCTGCCTGCTCTGCACCAAGGCCTTCAGGCAGAAACCGGCGCTCAACCGGCACATGCGGGTAAACCTCTTCCTCTTCggcatttatttgtccactgctggacaccTCTTCATGTTTCTTAGAAACGTTCGAACTGAGTCGAGCAATCAGCTGAGGATCCATGCGCGGACGCACAGCGGCGAGCGGCCCTACCGCTGCCAGCTGTGCACCAAGGCCTTCAGGCAGAAGCCTGCGCTCAACCGGCACATGAGGGTACACACGGGGGCGAAACCCTACGGCTGCCAGTACTGCGCGAAGACATTCAGTCAGTCCAACTCGCTGAAGCTACACATCCGCACGGTGCACTTCAAACTGCCCTCTAATAACAGGAGAAATAAGATCCAGACTGCCACGGCGGTTTGTTAG
- Protein Sequence
- MPTLLSLALCNRPYAIGLMQACLMPLTAESVSMIDRHIYNLTSNLICAHIETINSEPTYSCDVKAESDPNKDMKDHKKNLLTGIMTFDEKDLPWSQASIGDMTAGQKHKKLEIKPDPTPHQVIQRNKTVLVKNLKMELQNDSGGFETIREEVDTEFEGVSRSDSEDDLPLTCISRSQEKAEKQTKSRTVKKSGNRVSSQKTSFYAKEVTLTREDQLAEMKERATSTNYLHSQFKCEMCFKGFIEETAFRKHLDKHNESRGAYRCDVCALRYATSRQLRAHDISAHARQYHCLTCAHRSHTAHQAREHERWHRGFLYECKLCGKKFRKPTSHLTHMRKKHATGHDCLRCGDSFVGRRGLVVHNTKTHRDEEPVDDSPESERTCDQCNIVFLTVDACKRHAVNSVKHKDDTENSNACNRCSERFESAVELATHMSLHRAARARAPCGVRLTCSYCSNEFANKSKLQAHIRRVHLGLKFNKNIVCELCGKRCTSNATLRYHQRTHTGERPYPCRFAGCARRFADSNQLRIHARTHSGERPYRCLLCTKAFRQKPALNRHMRVNLFLFGIYLSTAGHLFMFLRNVRTESSNQLRIHARTHSGERPYRCQLCTKAFRQKPALNRHMRVHTGAKPYGCQYCAKTFSQSNSLKLHIRTVHFKLPSNNRRNKIQTATAVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -