Zhep013267.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- -
- Assembly
- GCA_949319315.1
- Location
- OX439386.1:14953323-14955947[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.21 11 7.0 0.0 2 23 131 153 130 153 0.96 2 18 0.92 50 5.0 0.7 1 23 173 195 173 195 0.96 3 18 0.00067 0.037 14.9 1.1 1 23 199 221 199 221 0.98 4 18 0.0054 0.29 12.0 1.9 1 23 228 251 228 251 0.96 5 18 3.5 1.9e+02 3.2 5.0 1 19 257 275 257 280 0.87 6 18 0.00014 0.0076 17.1 4.2 1 23 288 310 288 311 0.96 7 18 0.062 3.4 8.7 0.3 1 23 317 339 317 339 0.97 8 18 4.9e-07 2.7e-05 24.8 0.6 1 23 346 368 346 368 0.98 9 18 0.0071 0.39 11.7 0.4 1 23 426 449 426 449 0.94 10 18 9.9 5.4e+02 1.8 4.7 2 23 476 498 475 499 0.93 11 18 2.6 1.4e+02 3.6 2.3 2 23 521 542 520 542 0.96 12 18 0.00054 0.03 15.2 0.2 1 23 546 568 546 568 0.96 13 18 0.51 28 5.8 1.0 1 23 573 596 573 596 0.91 14 18 0.0017 0.094 13.6 1.3 2 23 604 626 603 626 0.94 15 18 0.0036 0.2 12.6 3.3 2 23 634 656 633 656 0.96 16 18 0.00044 0.024 15.5 3.9 1 23 662 684 662 684 0.95 17 18 5.2e-06 0.00029 21.5 0.9 1 23 690 712 690 712 0.98 18 18 0.00033 0.018 15.9 3.8 1 23 718 741 718 741 0.97
Sequence Information
- Coding Sequence
- ATGTTTCGGAACCCGCGAACTCTGGAAGAACCTTTGCAGCTGGCCCCTAAAGCACCCACAATAACTAGAATTGAATTTCAAGACTGCTCAAGCAACTCGACACACAACTCCGTAGAGATTGTAAATCCAAAGGAAAAACCGTTGCCACCCGACCGCGCACTGGCCGCGAGATTCCGCGAAAACATTCTGAATCTGCTCCACAACTCCAATGCCAGCCTGATAAGGAAGATAGACCACGGCGGGTTCCACTGCAGACTGTGCGAGGAGAGGTGGCCTGAAGCAGCACAGTTAAAGTCACACTTCATCGAAATCCACACCCAGCAGGAAGCTTTGCAGACAATTGACTTCAAGTCTCTGGGCTGCTCGGCTAAACTCGACATTACAGCGCTCACGTGCTCTCTGTGCGGTGAAGAAGGCGATACAATAGAGTTGTTCCTCGAGCACCTGCGAACTGAACACAAGTTGCGAACCCACGACGGCACCACCCTCCTGCCGTTCAAGTTCGACAAGCCAGGCTACTCCTGTGTGGTCTGCATCGCCAACTTCGGCACTTTCAAATCGCTCCTCAGTCATATGCACGTACATTACAACAGCCACGAATGCGAGGTCTGCGGCGCTGGCTTCTACAACAGAACCAGCATGCGCTCCCACAGGCTCACACACGTCACCGCGAAAGACGCGTTCAAATGCACGACCTGCGAGAAAACGTTTGACAATGACCGGAACCGCATCAACCACGAAAAGCGAGTCCACCTCCACCACAAAGCCTACATGTGCCACGTGTGCAAGGAGAAGTTCCAGGATTACTACGAGCGAAACACCCACTGCAAAGAAGTCCATGGACTCAAAGATATGGGCAACTTCCAGTGCCAAGCATGTGATAGGAAGTTTAAACGGTCTTACGGCCTAAGAACGCATGTCCAAAAGCACCATCTCATGGAGCGGCGGTTCTATTGTGAGATCTGCGACAGCAAGTTCTGGAGTGCGCAAGTGCTGAAGGATCATATGATAAAGCACACGGGCGCAATAACTGAGTTCGTCTGCCCGGAATGTGAGAAAGTGTTCAGCAGAAAGAGGGTTTTGCGAAAGCACATGGAGTCCCATTTACCCGTGGGACAATACGAGTGTAAACTACGGACAACTAAAATTACCAAAGGCCTGGAAAGAACAGCCAAGCCTAGAAAAGGCGAGGAACTGGAAAAGCATCGTCACAATATACGAATTATACTACAATGCTCAAATGCTACTCCTATAAGATGCAAGAACGGTATTGGATACGTCTGCTCTTTTTGCACGGAACAGTACCCCGAACCAAAAGATCTCAAGCGACACACTCTAGAGCAGCACAACGAGAAATGCAAACTGAAATTCATGAAAAACAAACCAATGATGAACTACGTTGTAAAGCTCGACATAACCGGGCTTTGCTGCGAGGTCTGTACAAAAGACATGCACACCCTCGACCAACTGACCGACCATCTTACCAAAGAGCACCACAAAGAAATCTTCACAGATATAAAGAACCACATCTTGCCATTCAAGTTTGAGGACGACGTTCTGCGCTGCGTCTACTGCGCCAACCACTTCAGTAAATTCAAAATACTTCAGGAGCACATGAACTCACACCGCAGGAACTACGTTTGTCCAACGTGCGACGCCGGGTTCGTCAACCGGCAGTACCTCCAAGCGCACAGTTACAAGCACAACATCGGAGTTTTCAACTGCGACTATTGCCCGAAAGTCTTAGACAGCCACATCAAAAAGAAGGAACACGAGAAAGTCGTACACATTTACAAAGGGAAAACTAGCAAATGCACTTACTGCGGTAAAAAGTTCAGCGTCTACACCACGAGGAACGAGCACATGGTGAAAGTGCACGGTGCCAAGCCACTGGTGTTACAATGCCAAGCATGCGATCGGACTTTCGACAAACGATGCGCGTTAACCAGGCACACGAAGAGAGATCATCTTATGGAGAGGAAACACGAATGCCCAGAATGCGAGAAGAGGTTTTTCACCAAAAAACAGCTGAGGGAGCACTCGACAAAGCACAGCGGCCAACGGAACTTTACCTGTGACGTGTGCTTCAAAGCGTATGCTAGGAAGACTACTTTACGAGAGCATATGAGAATTCACATCGACGACCGCAGATTCAGCTGCGTGTATTGCCCGCAAACGTTTATACAAAAGTGTAGCCTTAAAAGTCATTTGAAATCGCGGCACGGTGTTACTGAATAA
- Protein Sequence
- MFRNPRTLEEPLQLAPKAPTITRIEFQDCSSNSTHNSVEIVNPKEKPLPPDRALAARFRENILNLLHNSNASLIRKIDHGGFHCRLCEERWPEAAQLKSHFIEIHTQQEALQTIDFKSLGCSAKLDITALTCSLCGEEGDTIELFLEHLRTEHKLRTHDGTTLLPFKFDKPGYSCVVCIANFGTFKSLLSHMHVHYNSHECEVCGAGFYNRTSMRSHRLTHVTAKDAFKCTTCEKTFDNDRNRINHEKRVHLHHKAYMCHVCKEKFQDYYERNTHCKEVHGLKDMGNFQCQACDRKFKRSYGLRTHVQKHHLMERRFYCEICDSKFWSAQVLKDHMIKHTGAITEFVCPECEKVFSRKRVLRKHMESHLPVGQYECKLRTTKITKGLERTAKPRKGEELEKHRHNIRIILQCSNATPIRCKNGIGYVCSFCTEQYPEPKDLKRHTLEQHNEKCKLKFMKNKPMMNYVVKLDITGLCCEVCTKDMHTLDQLTDHLTKEHHKEIFTDIKNHILPFKFEDDVLRCVYCANHFSKFKILQEHMNSHRRNYVCPTCDAGFVNRQYLQAHSYKHNIGVFNCDYCPKVLDSHIKKKEHEKVVHIYKGKTSKCTYCGKKFSVYTTRNEHMVKVHGAKPLVLQCQACDRTFDKRCALTRHTKRDHLMERKHECPECEKRFFTKKQLREHSTKHSGQRNFTCDVCFKAYARKTTLREHMRIHIDDRRFSCVYCPQTFIQKCSLKSHLKSRHGVTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -